Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C020828.2 Cucumis melo HOM05D005442 ORTHO05D006450 8.4e-273 943.3 572 100.0
CsaV3_2G016200 Cucumis sativus L. HOM05D005442 ORTHO05D006450 1.2e-242 843.2 572 88.6
ClCG02G012030 Citrullus lanatus HOM05D005442 ORTHO05D006450 2.5e-176 622.9 574 62.4
Sed0001500 Sechium edule HOM05D005442 ORTHO05D006450 1.3e-161 573.9 584 57.4
GSVIVG01023996001 Vitis vinifera HOM05D005442 ORTHO05D006450 1.1e-91 341.7 660 39.5
Dinv41924 Davidia involucrata HOM05D005442 ORTHO05D006450 4.0e-89 333.2 615 39.3
TWI31G1375 Tripterygium wilfordii HOM05D005442 ORTHO05D006450 1.7e-87 327.8 595 40.5
CiPaw.05G084400 Carya illinoinensis HOM05D005442 ORTHO05D006450 6.4e-87 325.9 618 39.2
Actinidia39159 Actinidia chinensis HOM05D005442 ORTHO05D006450 2.6e-80 303.9 427 45.4
Actinidia21468 Actinidia chinensis HOM05D005442 ORTHO05D006450 3.7e-79 300.1 433 45.7
Ciclev10028168m.g Citrus clementina HOM05D005442 ORTHO05D006450 6.4e-79 299.3 618 36.9
Thecc.02G056900 Theobroma cacao HOM05D005442 ORTHO05D006450 1.9e-78 297.7 614 36.2
QL11p051413 Quercus lobata HOM05D005442 ORTHO05D006450 7.1e-78 295.8 638 37.5
TAR369G0572 Trochodendron aralioides HOM05D005442 ORTHO05D006450 7.1e-78 295.8 635 36.1
TAR376G0424 Trochodendron aralioides HOM05D005442 ORTHO05D006450 1.0e-76 292.0 621 36.6
CSS0044298 Camellia sinensis var. sinensis HOM05D005442 ORTHO05D006450 2.3e-76 290.8 609 37.1
vmacro17319 Vaccinium macrocarpon HOM05D005442 ORTHO05D006450 5.6e-75 286.2 322 51.2
Eucgr.I01451 Eucalyptus grandis HOM05D005442 ORTHO05D006450 5.2e-73 279.6 523 40.9
Sc08g0002780 Simmondsia chinensis HOM05D005442 ORTHO05D006450 7.6e-72 275.8 403 46.7
Atru.chr5.3384 Acer truncatum HOM05D005442 ORTHO05D006450 8.3e-71 272.3 285 54.4
Haze_13370 Corylus avellana HOM05D005442 ORTHO05D006450 3.2e-70 270.4 398 44.7
CANSAT56G0103 Cannabis sativa HOM05D005442 ORTHO05D006450 5.4e-70 269.6 297 52.2
Sopen01g053760 Solanum pennellii HOM05D005442 ORTHO05D006450 4.6e-69 266.5 405 43.5
Hund06446 Selenicereus undatus HOM05D005442 ORTHO05D006450 7.8e-69 265.8 334 49.4
Solyc01g111720.4 Solanum lycopersicum HOM05D005442 ORTHO05D006450 1.3e-68 265.0 405 43.2
PGSC0003DMG400006166 Solanum tuberosum HOM05D005442 ORTHO05D006450 3.0e-68 263.8 396 44.4
Peaxi162Scf00362g00530 Petunia axillaris HOM05D005442 ORTHO05D006450 3.9e-68 263.5 415 43.6
Nn1g06499 Nelumbo nucifera HOM05D005442 ORTHO05D006450 8.6e-68 262.3 225 58.7
Lj5g0013939 Lotus japonicus HOM05D005442 ORTHO05D006450 3.3e-67 260.4 401 44.1
Lsat_1_v5_gn_6_13820 Lactuca sativa HOM05D005442 ORTHO05D006450 4.3e-67 260.0 268 51.9
Sabra09G0106500 Salix brachista HOM05D005442 ORTHO05D006450 9.6e-67 258.8 617 34.8
MD05G1123900 Malus domestica HOM05D005442 ORTHO05D006450 2.1e-66 257.7 582 40.0
Lalb_Chr06g0163701 Lupinus albus HOM05D005442 ORTHO05D006450 1.4e-65 255.0 376 44.7
Manes.01G140900 Manihot esculenta HOM05D005442 ORTHO05D006450 2.0e-64 251.1 415 41.2
Cpa.g.sc20.103 Carica papaya HOM05D005442 ORTHO05D006450 4.4e-64 250.0 424 41.5
ATR0763G134 Amborella trichopoda HOM05D005442 ORTHO05D006450 5.8e-64 249.6 277 50.5
MBI11_g07617_MAGBIO Magnolia biondii HOM05D005442 ORTHO05D006450 1.3e-63 248.4 342 45.9
arahy.Tifrunner.gnm1.ann1.WUXL4S Arachis hypogaea HOM05D005442 ORTHO05D006450 2.2e-63 247.7 292 51.0
arahy.Tifrunner.gnm1.ann1.ZGQ44R Arachis hypogaea HOM05D005442 ORTHO05D006450 8.4e-63 245.7 297 49.2
MSTRG.16924 Avicennia marina HOM05D005442 ORTHO05D006450 1.4e-62 245.0 343 46.4
Cc09_g09800 Coffea canephora HOM05D005442 ORTHO05D006450 9.3e-62 242.3 347 43.8
Psat6g232320 Pisum sativum HOM05D005442 ORTHO05D006450 9.3e-62 242.3 279 50.5
Medtr1g112820 Medicago truncatula HOM05D005442 ORTHO05D002291 3.5e-61 240.4 295 49.2
AUR62013010 Chenopodium quinoa HOM05D005442 ORTHO05D006450 7.8e-61 239.2 300 47.7
AUR62010020 Chenopodium quinoa HOM05D005442 ORTHO05D006450 1.0e-60 238.8 357 43.1
Gorai.005G254900 Gossypium raimondii HOM05D005442 ORTHO05D006450 5.1e-60 236.5 394 42.9
Ca_03302_v3 Cicer arietinum L. HOM05D005442 ORTHO05D006450 2.5e-59 234.2 394 42.4
Gohir.A03G205700 Gossypium hirsutum HOM05D005442 ORTHO05D006450 2.5e-59 234.2 398 42.5
CDE04G0468 Ceratophyllum demersum HOM05D005442 ORTHO05D000996 3.3e-59 233.8 214 57.0
Glyma.20G106900 Glycine max HOM05D005442 ORTHO05D006450 7.3e-59 232.6 301 48.2
PSO541G1416 Papaver somniferum HOM05D005442 ORTHO05D006450 9.6e-59 232.3 379 41.4
Phvul.007G018400 Phaseolus vulgaris HOM05D005442 ORTHO05D006450 2.1e-58 231.1 425 39.1
Gohir.D02G227000 Gossypium hirsutum HOM05D005442 ORTHO05D006450 2.8e-58 230.7 394 42.4
PGR142G2067 Punica granatum HOM05D005442 ORTHO05D006450 6.2e-58 229.6 407 39.3
EL10Ac9g21351 Beta vulgaris HOM05D005442 ORTHO05D006450 1.8e-57 228.0 402 39.6
ECA233G3196 Erigeron canadensis HOM05D005442 ORTHO05D006450 2.4e-57 227.6 335 45.4
CDE02G3112 Ceratophyllum demersum HOM05D005442 ORTHO05D006450 4.0e-57 226.9 237 54.0
COL.COLO4_17367 Corchorus olitorius HOM05D005442 ORTHO05D006450 1.2e-56 225.3 528 42.6
Duzib132G0277 Durio zibethinus HOM05D005442 ORTHO05D006450 3.4e-56 223.8 430 37.9
PSO675G1865 Papaver somniferum HOM05D005442 ORTHO05D006450 3.4e-56 223.8 365 42.2
Glyma.10G282700 Glycine max HOM05D005442 ORTHO05D006450 9.9e-56 222.2 401 41.6
Aqoxy6G02079 Aquilegia oxysepala HOM05D005442 ORTHO05D006450 2.9e-55 220.7 361 37.4
RcHm_v2.0_Chr6g0278721 Rosa chinensis HOM05D005442 ORTHO05D006450 2.9e-55 220.7 387 40.8
FAN15G0807 Fragaria x ananassa HOM05D005442 ORTHO05D006450 1.1e-54 218.8 204 56.9
FvH4_2g15550 Fragaria vesca HOM05D005442 ORTHO05D006450 2.4e-54 217.6 229 52.0
FAN24G2500 Fragaria x ananassa HOM05D005442 ORTHO05D006450 2.4e-54 217.6 229 52.0
SGA_v2.0_scaffold58G20356 Striga asiatica HOM05D002097 ORTHO05D002248 3.2e-54 217.2 317 44.2
Zm00001eb134390 Zea mays HOM05D005442 ORTHO05D006450 2.7e-53 214.2 235 53.6
FAN27G2972 Fragaria x ananassa HOM05D005442 ORTHO05D006450 6.0e-53 213.0 219 53.0
Actinidia32035 Actinidia chinensis HOM05D005442 ORTHO05D006450 2.3e-52 211.1 598 30.9
Prupe.8G167900 Prunus persica HOM05D005442 ORTHO05D006450 3.9e-52 210.3 391 42.2
unitig_744.g24278 Utricularia gibba HOM05D005442 ORTHO05D006450 2.5e-51 207.6 257 48.2
FAN20G2789 Fragaria x ananassa HOM05D005442 ORTHO05D006450 9.6e-51 205.7 219 52.5
DCAR_011887 Daucus carota HOM05D005442 ORTHO05D006450 1.6e-50 204.9 326 40.2
Os02g0101100 Oryza sativa ssp. japonica HOM05D005442 ORTHO05D006450 3.1e-49 200.7 209 52.6
Migut.B00066 Erythranthe guttata HOM05D005442 ORTHO05D006450 9.0e-49 199.1 303 43.6
HPP92_022198 Vanilla planifolia HOM05D005442 ORTHO05D006450 1.2e-48 198.7 276 45.7
THA.LOC104807379 Tarenaya hassleriana HOM05D005442 ORTHO05D006450 1.5e-48 198.4 387 37.2
HPP92_022180 Vanilla planifolia HOM05D005442 ORTHO05D006450 2.0e-48 198.0 276 45.3
Ah.01g023170 Amaranthus hybridus HOM05D005442 ORTHO05D006450 7.6e-48 196.1 403 37.0
Thhalv10022629m.g Eutrema salsugineum HOM05D005442 ORTHO05D006450 4.9e-47 193.4 304 44.1
Aa31LG8G14120 Aethionema arabicum HOM05D005442 ORTHO05D006450 2.4e-46 191.0 379 36.4
BcaB03g16428 Brassica carinata HOM05D005442 ORTHO05D006450 4.2e-46 190.3 300 42.0
A07p04140 Brassica napus HOM05D005442 ORTHO05D006450 7.1e-46 189.5 299 42.8
BraA07t28205Z Brassica rapa HOM05D005442 ORTHO05D006450 7.1e-46 189.5 299 42.8
Sp3g30220 Schrenkiella parvula HOM05D005442 ORTHO05D006450 9.3e-46 189.1 315 42.2
Rhsim05G0053500 Rhododendron simsii HOM05D005442 ORTHO05D006450 2.1e-45 188.0 280 45.0
BcaC06g36199 Brassica carinata HOM05D005442 ORTHO05D006450 4.6e-45 186.8 299 42.1
BolC7t41079H Brassica oleracea HOM05D005442 ORTHO05D006450 4.6e-45 186.8 299 42.1
C07p06570 Brassica napus HOM05D005442 ORTHO05D006450 1.3e-44 185.3 299 41.8
SalBow1G0486 Salvia bowleyana HOM05D005442 ORTHO05D006450 1.5e-43 181.8 284 44.0
CARHR033820 Cardamine hirsuta HOM05D005442 ORTHO05D006450 2.8e-42 177.6 308 41.9
AL1G48920 Arabidopsis lyrata HOM05D005442 ORTHO05D006450 8.1e-42 176.0 304 42.1
AT1G34360 Arabidopsis thaliana HOM05D005442 ORTHO05D006450 8.1e-42 176.0 304 40.8
Carub.0001s3251 Capsella rubella HOM05D005442 ORTHO05D006450 8.1e-42 176.0 308 40.9
Atru.chr3.3284 Acer truncatum HOM05D005442 ORTHO05D006450 6.9e-41 172.9 168 55.4
TPR.G2470 Trifolium pratense HOM05D005442 ORTHO05D006450 2.2e-39 167.9 337 36.5
Lj5A177G53 Lonicera japonica HOM05D005442 ORTHO05D006450 1.4e-38 165.2 186 50.5
arahy.Tifrunner.gnm1.ann1.U87P2U Arachis hypogaea HOM05D005442 ORTHO05D006450 4.2e-38 163.7 181 54.1
HanXRQChr08g0227271 Helianthus annuus HOM05D005442 ORTHO05D006450 1.5e-35 155.2 246 41.9
TWI79G1761 Tripterygium wilfordii HOM05D005442 ORTHO05D006450 2.5e-35 154.5 218 45.9
HPP92_028071 Vanilla planifolia HOM05D005442 ORTHO05D006450 9.0e-33 146.0 235 41.7
Cc02_g27640 Coffea canephora HOM05D005442 ORTHO05D006450 7.6e-32 142.9 212 42.5
Mapoly0037s0141 Marchantia polymorpha HOM05D005442 ORTHO05D006450 1.3e-28 132.1 231 38.1
SHI05769 Sapria himalayana HOM05D005442 ORTHO05D006450 1.3e-28 132.1 288 35.1
Pp3c16_14950 Physcomitrium patens HOM05D005442 ORTHO05D006450 2.3e-28 131.3 187 44.9
Pp3c27_2790 Physcomitrium patens HOM05D005442 ORTHO05D006450 5.1e-28 130.2 215 42.3
VMungo0720G2182 Vigna mungo HOM05D005442 ORTHO05D006450 1.1e-27 129.0 245 38.4
Lj5A177G54 Lonicera japonica HOM05D005442 ORTHO05D006450 9.7e-27 125.9 215 42.8
Oeu015514.1 Olea europaea HOM05D005442 ORTHO05D006450 6.3e-26 123.2 101 58.4
CAN.G588.93 Capsicum annuum HOM05D005442 ORTHO05D006450 8.2e-26 122.9 173 45.1
Cfa023336 Carpinus fangiana HOM05D005442 ORTHO05D006450 1.0e-23 115.9 222 42.8
SMO171G0119 Selaginella moellendorffii HOM05D005442 ORTHO05D006450 1.1e-22 112.5 227 35.2
AagrBONN_evm.TU.Sc2ySwM_344.3952 Anthoceros agrestis HOM05D005442 ORTHO05D006450 1.2e-21 109.0 233 34.8
C03p57670 Brassica napus HOM05D005442 ORTHO05D006450 1.1e-19 102.4 109 49.5
BcaC01g02969 Brassica carinata HOM05D005442 ORTHO05D006450 2.8e-18 97.8 101 52.5
BolC3t18042H Brassica oleracea HOM05D005442 ORTHO05D013811 4.8e-18 97.1 109 48.6
CAN.G588.92 Capsicum annuum HOM05D005442 ORTHO05D006450 1.4e-17 95.5 168 42.9
Rhsim05G0053300 Rhododendron simsii HOM05D005442 ORTHO05D006450 3.4e-16 90.9 128 44.5
MD10G1126600 Malus domestica HOM05D005442 ORTHO05D006450 1.0e-15 89.4 80 60.0
CBR_g29438 Chara braunii HOM05D005442 ORTHO05D006450 2.9e-15 87.8 198 32.3
Actinidia39161 Actinidia chinensis HOM05D005442 ORTHO05D006450 3.8e-15 87.4 202 36.1
C03p57690 Brassica napus HOM05D005442 ORTHO05D013811 3.8e-15 87.4 109 45.9
Oeu032532.1 Olea europaea HOM05D005442 ORTHO05D006450 9.4e-14 82.8 178 37.1
Cfa021053 Carpinus fangiana HOM05D004690 ORTHO05D005527 6.1e-13 80.1 170 35.3
Actinidia21470 Actinidia chinensis HOM05D005442 ORTHO05D006450 5.1e-12 77.0 159 40.3
Rhsim09G0155200 Rhododendron simsii HOM05D005442 ORTHO05D006450 8.8e-12 76.3 74 52.7
MCO13G079 Micromonas commoda HOM05D005442 ORTHO05D006450 7.4e-11 73.2 189 30.7
Potri.009G137000 Populus trichocarpa HOM05D005442 ORTHO05D006450 2.2e-10 71.6 336 28.0
CBR_g7972 Chara braunii HOM05D004690 ORTHO05D005527 6.3e-10 70.1 186 30.1
Pp3c2_19940 Physcomitrium patens HOM05D004690 ORTHO05D005527 7.0e-09 66.6 229 25.8
Pp3c14_5800 Physcomitrium patens HOM05D004690 ORTHO05D005527 9.1e-09 66.2 232 26.3
SMO353G0310 Selaginella moellendorffii HOM05D004690 ORTHO05D005527 3.5e-08 64.3 149 30.2
AagrBONN_evm.TU.Sc2ySwM_228.3886 Anthoceros agrestis HOM05D004690 ORTHO05D005527 4.5e-08 63.9 161 29.2
C03p57650 Brassica napus HOM05D005442 ORTHO05D006450 5.9e-08 63.5 54 53.7
BolC3t18039H Brassica oleracea HOM05D005442 ORTHO05D006450 5.9e-08 63.5 54 53.7
BolC3t18043H Brassica oleracea HOM05D008551 ORTHO05D006450 7.7e-08 63.2 78 44.9
MCO15G501 Micromonas commoda HOM05D004690 ORTHO05D005527 7.7e-08 63.2 228 27.2
SEGI_12526 Sequoiadendron giganteum HOM05D005442 ORTHO05D006450 1.3e-07 62.4 45 57.8
Nitab4.5_0003698g0060 Nicotiana tabacum HOM05D005442 ORTHO05D006450 2.9e-07 61.2 215 32.1
Mapoly0090s0068 Marchantia polymorpha HOM05D004690 ORTHO05D005527 6.5e-07 60.1 175 26.9
BcaC01g02968 Brassica carinata HOM05D005442 ORTHO05D006450 2.5e-06 58.2 126 31.7
DCAR_017916 Daucus carota HOM05D004690 ORTHO05D005527 4.2e-06 57.4 180 26.1
Aa31LG2G19730 Aethionema arabicum HOM05D004690 ORTHO05D005527 7.2e-06 56.6 174 27.6
COL.COLO4_23958 Corchorus olitorius HOM05D004690 ORTHO05D005527 7.2e-06 56.6 197 23.9


User provided reference genes

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