Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C020789.2 Cucumis melo HOM05D004110 ORTHO05D004810 0.0e+00 1993.4 1024 100.0
CsaV3_2G015750 Cucumis sativus L. HOM05D004110 ORTHO05D004810 0.0e+00 1865.9 1006 95.5
Sed0006799 Sechium edule HOM05D004110 ORTHO05D004810 0.0e+00 1581.6 1013 81.3
ClCG02G011600 Citrullus lanatus HOM05D004110 ORTHO05D004810 0.0e+00 1277.3 744 88.7
Prupe.8G161000 Prunus persica HOM05D004110 ORTHO05D004810 3.3e-288 995.3 1022 54.8
QL11p047649 Quercus lobata HOM05D004110 ORTHO05D004810 7.0e-286 987.6 1016 53.4
RcHm_v2.0_Chr6g0245151 Rosa chinensis HOM05D004110 ORTHO05D004810 5.5e-283 978.0 1025 54.0
GSVIVG01024075001 Vitis vinifera HOM05D004110 ORTHO05D004810 6.7e-281 971.1 1012 52.6
Cfa005187 Carpinus fangiana HOM05D004110 ORTHO05D004810 8.8e-281 970.7 1016 52.9
CANSAT25G3021 Cannabis sativa HOM05D004110 ORTHO05D004810 5.9e-277 958.0 1015 52.5
FAN15G2714 Fragaria x ananassa HOM05D004110 ORTHO05D004810 1.7e-276 956.4 1022 52.7
Dinv04965 Davidia involucrata HOM05D004110 ORTHO05D004810 2.2e-276 956.1 1020 51.8
Gorai.008G034000 Gossypium raimondii HOM05D004110 ORTHO05D004810 2.2e-276 956.1 1012 51.6
Duzib248G0147 Durio zibethinus HOM05D004110 ORTHO05D004810 1.1e-275 953.7 1014 51.3
FvH4_2g01950 Fragaria vesca HOM05D004110 ORTHO05D004810 1.9e-275 953.0 1022 52.6
FAN20G3101 Fragaria x ananassa HOM05D004110 ORTHO05D004810 4.2e-275 951.8 1022 52.8
FAN24G2945 Fragaria x ananassa HOM05D004110 ORTHO05D004810 5.5e-275 951.4 1022 52.7
Gohir.D12G033200 Gossypium hirsutum HOM05D004110 ORTHO05D004810 1.6e-274 949.9 1012 51.4
Thecc.02G066600 Theobroma cacao HOM05D004110 ORTHO05D004810 2.1e-274 949.5 1018 50.9
Gohir.A12G039200 Gossypium hirsutum HOM05D004110 ORTHO05D004810 1.0e-273 947.2 1012 51.3
CiPaw.06G125000 Carya illinoinensis HOM05D004110 ORTHO05D004810 1.4e-273 946.8 1015 50.8
Haze_02193 Corylus avellana HOM05D004110 ORTHO05D004810 1.2e-272 943.7 1016 51.6
Manes.04G077900 Manihot esculenta HOM05D004110 ORTHO05D004810 8.3e-271 937.6 1025 49.3
MD05G1116500 Malus domestica HOM05D004110 ORTHO05D004810 1.6e-269 933.3 1024 52.2
Actinidia29167 Actinidia chinensis HOM05D004110 ORTHO05D004810 1.7e-268 929.9 1019 50.6
Potri.009G130000 Populus trichocarpa HOM05D004110 ORTHO05D004810 3.4e-264 915.6 1016 50.5
TWI79G0689 Tripterygium wilfordii HOM05D004110 ORTHO05D004810 1.1e-262 910.6 1022 50.5
Ciclev10027667m.g Citrus clementina HOM05D004110 ORTHO05D004810 4.1e-262 908.7 1014 50.0
Sabra09G0099400 Salix brachista HOM05D004110 ORTHO05D004810 1.2e-261 907.1 1034 49.9
CSS0024884 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 2.0e-261 906.4 1019 49.6
Cpa.g.sc37.187 Carica papaya HOM05D004110 ORTHO05D004810 6.1e-258 894.8 1016 49.2
Lalb_Chr01g0001341 Lupinus albus HOM05D004110 ORTHO05D004810 1.1e-254 884.0 1013 49.1
vmacro17377 Vaccinium macrocarpon HOM05D004110 ORTHO05D004810 7.0e-254 881.3 1022 47.8
Glyma.12G024600 Glycine max HOM05D004110 ORTHO05D004810 1.2e-253 880.6 1014 49.1
TAR376G1212 Trochodendron aralioides HOM05D004110 ORTHO05D004810 1.6e-250 870.2 1028 48.9
Lj5C184G3 Lonicera japonica HOM05D004110 ORTHO05D004810 1.4e-249 867.1 1019 49.2
Rhsim05G0062900 Rhododendron simsii HOM05D004110 ORTHO05D004810 3.0e-244 849.4 1026 47.4
Phvul.011G026800 Phaseolus vulgaris HOM05D004110 ORTHO05D004810 3.9e-244 849.0 1014 47.9
Psat7g138160 Pisum sativum HOM05D004110 ORTHO05D004810 3.9e-244 849.0 1009 47.3
arahy.Tifrunner.gnm1.ann1.6KB8MN Arachis hypogaea HOM05D004110 ORTHO05D004810 2.1e-242 843.2 1012 47.8
arahy.Tifrunner.gnm1.ann1.5454UR Arachis hypogaea HOM05D004110 ORTHO05D004810 1.8e-241 840.1 1012 47.7
Ca_30033_v3 Cicer arietinum L. HOM05D004110 ORTHO05D004810 3.1e-241 839.3 1015 46.7
Lj3g0009405 Lotus japonicus HOM05D004110 ORTHO05D004810 2.4e-238 829.7 1014 47.9
MBI05_g07505_MAGBIO Magnolia biondii HOM05D004110 ORTHO05D004810 7.1e-238 828.2 1024 45.1
Nn5g29099 Nelumbo nucifera HOM05D004110 ORTHO05D004810 7.8e-237 824.7 1025 45.6
Medtr4g075330 Medicago truncatula HOM05D004110 ORTHO05D004810 1.3e-236 823.9 1010 46.6
Cc02_g16480 Coffea canephora HOM05D004110 ORTHO05D004810 9.5e-235 817.8 1020 45.3
Eucgr.I01378 Eucalyptus grandis HOM05D004110 ORTHO05D004810 1.6e-234 817.0 1018 45.1
PGR142G1237 Punica granatum HOM05D004110 ORTHO05D004810 2.6e-232 809.7 1015 45.9
DCAR_022780 Daucus carota HOM05D004110 ORTHO05D004810 7.6e-232 808.1 1021 45.2
TPR.G17192 Trifolium pratense HOM05D004110 ORTHO05D004810 7.6e-232 808.1 967 47.8
MSTRG.20018 Avicennia marina HOM05D004110 ORTHO05D004810 7.3e-227 791.6 1022 44.8
Ca_19005_v3 Cicer arietinum L. HOM05D004110 ORTHO05D004810 1.6e-226 790.4 1026 44.7
Nitab4.5_0006590g0010 Nicotiana tabacum HOM05D004110 ORTHO05D004810 7.6e-224 781.6 1020 42.7
EL10Ac9g21435 Beta vulgaris HOM05D004110 ORTHO05D004810 1.9e-222 776.9 1030 43.5
PSO541G0713 Papaver somniferum HOM05D004110 ORTHO05D004810 3.2e-222 776.2 1032 43.7
C07p63600 Brassica napus HOM05D004110 ORTHO05D004810 4.6e-221 772.3 1020 44.8
BolC7t46773H Brassica oleracea HOM05D004110 ORTHO05D004810 4.6e-221 772.3 1020 44.8
Sp7g37050 Schrenkiella parvula HOM05D004110 ORTHO05D004810 7.8e-221 771.5 1012 44.7
BraA06t27759Z Brassica rapa HOM05D004110 ORTHO05D004810 1.7e-220 770.4 1020 44.8
THA.LOC104824773 Tarenaya hassleriana HOM05D004110 ORTHO05D004810 2.3e-220 770.0 1014 44.8
A06p48910 Brassica napus HOM05D004110 ORTHO05D004810 1.1e-219 767.7 1020 44.7
Thhalv10024188m.g Eutrema salsugineum HOM05D004110 ORTHO05D004810 1.5e-219 767.3 1023 44.3
PSO675G3689 Papaver somniferum HOM05D004110 ORTHO05D004810 7.3e-219 765.0 1032 43.6
Migut.B00121 Erythranthe guttata HOM05D004110 ORTHO05D004810 2.1e-218 763.5 1019 43.8
Solyc11g039880.2 Solanum lycopersicum HOM05D004110 ORTHO05D004810 2.1e-218 763.5 1022 42.8
AT4G38760 Arabidopsis thaliana HOM05D004110 ORTHO05D004810 3.6e-218 762.7 1011 43.7
Aqoxy2G01068 Aquilegia oxysepala HOM05D004110 ORTHO05D004810 1.1e-217 761.1 1036 44.0
Carub.0007s0061 Capsella rubella HOM05D004110 ORTHO05D004810 1.1e-217 761.1 1010 44.0
Nitab4.5_0007580g0010 Nicotiana tabacum HOM05D004110 ORTHO05D004810 3.1e-217 759.6 1067 41.0
AUR62010090 Chenopodium quinoa HOM05D004110 ORTHO05D004810 4.0e-217 759.2 1017 42.9
Sopen11g016530 Solanum pennellii HOM05D004110 ORTHO05D004810 6.4e-215 751.9 1026 42.3
AL7G10630 Arabidopsis lyrata HOM05D004110 ORTHO05D004810 1.4e-214 750.7 1011 43.3
AUR62013086 Chenopodium quinoa HOM05D004110 ORTHO05D004810 3.3e-211 739.6 1042 41.7
Ah.01g022610 Amaranthus hybridus HOM05D004110 ORTHO05D004810 1.4e-209 734.2 1018 42.0
Aa31LG6G16440 Aethionema arabicum HOM05D004110 ORTHO05D004810 4.0e-209 732.6 1042 42.7
SGA_v2.0_scaffold58G20427 Striga asiatica HOM05D004110 ORTHO05D004810 2.0e-208 730.3 1023 42.3
Hund00042 Selenicereus undatus HOM05D004110 ORTHO05D004810 5.7e-203 712.2 989 41.5
CAN.G603.1 Capsicum annuum HOM05D004110 ORTHO05D004810 2.1e-202 710.3 1023 40.6
Sc18g0006650 Simmondsia chinensis HOM05D004110 ORTHO05D004810 7.6e-200 701.8 1021 41.8
ECA234G0434 Erigeron canadensis HOM05D004110 ORTHO05D004810 6.1e-197 692.2 980 41.5
HanXRQChr10g0299011 Helianthus annuus HOM05D004110 ORTHO05D004810 6.9e-193 678.7 1010 41.2
BcaNung01969 Brassica carinata HOM05D004110 ORTHO05D004810 1.7e-183 647.5 1011 40.4
CARHR294450 Cardamine hirsuta HOM05D004110 ORTHO05D004810 2.3e-180 637.1 735 47.9
ATR0810G267 Amborella trichopoda HOM05D004110 ORTHO05D004810 2.6e-171 607.1 1023 38.8
Lsat_1_v5_gn_4_74700 Lactuca sativa HOM05D004110 ORTHO05D004810 3.5e-168 596.7 1009 38.1
unitig_21.g20818 Utricularia gibba HOM05D004110 ORTHO05D004810 2.2e-159 567.4 935 38.6
Oeu014463.1 Olea europaea HOM05D004110 ORTHO05D004810 8.6e-151 538.9 1009 35.6
Peaxi162Scf00684g00023 Petunia axillaris HOM05D004110 ORTHO05D004810 7.3e-142 509.2 892 37.2
Potri.004G168700 Populus trichocarpa HOM05D004110 ORTHO05D004810 4.7e-141 506.5 904 38.7
FAN27G1057 Fragaria x ananassa HOM05D004110 ORTHO05D004810 2.3e-140 504.2 526 54.4
Zm00001eb026650 Zea mays HOM05D004110 ORTHO05D004810 8.6e-135 485.7 1020 33.3
COL.COLO4_17262 Corchorus olitorius HOM05D004110 ORTHO05D004810 9.9e-123 445.7 759 38.2
Glyma.11G098600 Glycine max HOM05D004110 ORTHO05D004810 1.6e-109 401.7 417 51.6
MD10G1119600 Malus domestica HOM05D004110 ORTHO05D004810 9.9e-107 392.5 394 55.3
Pp3c5_12360 Physcomitrium patens HOM05D004110 ORTHO05D004810 4.8e-101 373.6 1086 27.1
Mapoly0001s0208 Marchantia polymorpha HOM05D004110 ORTHO05D004810 1.8e-100 371.7 1040 27.3
SHI05701 Sapria himalayana HOM05D004110 ORTHO05D004810 1.2e-99 369.0 596 38.8
SEGI_22669 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 2.2e-98 364.8 741 33.9
Os10g0154600 Oryza sativa ssp. japonica HOM05D004110 ORTHO05D004810 6.7e-95 353.2 655 35.1
AagrBONN_evm.TU.Sc2ySwM_344.4164 Anthoceros agrestis HOM05D004110 ORTHO05D004810 3.1e-92 344.4 1013 27.0
HPP92_005015 Vanilla planifolia HOM05D004110 ORTHO05D004810 2.1e-88 331.6 639 35.1
CBR_g5647 Chara braunii HOM05D004110 ORTHO05D004810 2.9e-58 231.5 1186 23.0
SMO171G0108 Selaginella moellendorffii HOM05D004110 ORTHO05D004810 1.0e-55 223.0 470 31.1
MD10G1119500 Malus domestica HOM05D004110 ORTHO05D004810 3.8e-50 204.5 208 53.8
FAN27G2584 Fragaria x ananassa HOM05D004110 ORTHO05D004810 5.7e-38 164.1 124 66.1
SEGI_07180 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 2.0e-30 139.0 352 29.3
SHI05700 Sapria himalayana HOM05D004110 ORTHO05D004810 8.0e-24 117.1 122 46.7
SEGI_22139 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 5.2e-23 114.4 357 28.3
Lj3g0004699 Lotus japonicus HOM05D004110 ORTHO05D004810 2.0e-19 102.4 200 34.0
AUR62040642 Chenopodium quinoa HOM05D004110 ORTHO05D004810 3.5e-19 101.7 140 40.7
PGSC0003DMG400022052 Solanum tuberosum HOM05D004110 ORTHO05D004810 8.1e-16 90.5 64 65.6
BcaB03g12223 Brassica carinata HOM05D004110 ORTHO05D004810 9.8e-14 83.6 112 43.8
SHI05699 Sapria himalayana HOM05D004110 ORTHO05D004810 5.6e-09 67.8 172 31.4
HPP92_005007 Vanilla planifolia HOM05D004110 ORTHO05D004810 2.8e-08 65.5 151 31.8
Sabra04G0113100 Salix brachista HOM05D004110 ORTHO05D004810 9.9e-06 57.0 106 36.8


User provided reference genes

Program Settings