Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C020712.2 Cucumis melo HOM05D005537 ORTHO05D006776 2.2e-111 405.6 198 100.0
ClCG11G011540 Citrullus lanatus HOM05D005537 ORTHO05D006776 9.3e-78 293.9 186 79.6
MELO3C003946.2 Cucumis melo HOM05D005537 ORTHO05D006776 9.3e-78 293.9 186 80.1
CsaV3_2G008990 Cucumis sativus L. HOM05D005537 ORTHO05D006776 1.2e-77 293.5 186 79.6
Sed0009431 Sechium edule HOM05D005537 ORTHO05D006776 1.3e-71 273.5 187 71.7
Sed0014380 Sechium edule HOM05D005537 ORTHO05D006776 6.2e-66 254.6 185 70.8
Dinv25489 Davidia involucrata HOM05D005537 ORTHO05D006776 2.3e-52 209.5 177 59.9
Cfa013489 Carpinus fangiana HOM05D005537 ORTHO05D006776 3.3e-51 205.7 169 60.9
Haze_22074 Corylus avellana HOM05D005537 ORTHO05D006776 3.3e-51 205.7 169 60.9
Prupe.1G069700 Prunus persica HOM05D005537 ORTHO05D006776 1.3e-50 203.8 169 60.9
Cpa.g.sc115.49 Carica papaya HOM05D005537 ORTHO05D006776 3.1e-49 199.1 174 55.7
Manes.02G080100 Manihot esculenta HOM05D005537 ORTHO05D006776 4.1e-49 198.7 182 54.4
TWI63G1753 Tripterygium wilfordii HOM05D005537 ORTHO05D006776 5.3e-49 198.4 182 55.5
MD16G1242600 Malus domestica HOM05D005537 ORTHO05D006776 1.5e-48 196.8 169 58.6
CiPaw.07G200800 Carya illinoinensis HOM05D005537 ORTHO05D006776 2.0e-48 196.4 168 58.3
Lalb_Chr13g0299751 Lupinus albus HOM05D005537 ORTHO05D006776 2.0e-48 196.4 172 59.9
PGR044G0610 Punica granatum HOM05D005537 ORTHO05D006776 4.5e-48 195.3 184 55.4
MD13G1237200 Malus domestica HOM05D005537 ORTHO05D006776 5.9e-48 194.9 169 57.4
TAR624G0592 Trochodendron aralioides HOM05D005537 ORTHO05D006776 1.0e-47 194.1 177 56.5
Gohir.A01G123800 Gossypium hirsutum HOM05D005537 ORTHO05D006776 1.7e-47 193.4 174 55.2
Gohir.D01G111500 Gossypium hirsutum HOM05D005537 ORTHO05D006776 1.7e-47 193.4 174 55.2
CANSAT01G2612 Cannabis sativa HOM05D005537 ORTHO05D006776 3.8e-47 192.2 169 56.8
FvH4_4g06690 Fragaria vesca HOM05D005537 ORTHO05D006776 6.5e-47 191.4 180 52.8
CSS0045027 Camellia sinensis var. sinensis HOM05D005537 ORTHO05D006776 8.5e-47 191.0 172 57.6
FAN12G0761 Fragaria x ananassa HOM05D005537 ORTHO05D006776 8.5e-47 191.0 180 52.8
Eucgr.C02216 Eucalyptus grandis HOM05D005537 ORTHO05D006776 1.4e-46 190.3 170 55.9
Atru.chr2.2727 Acer truncatum HOM05D005537 ORTHO05D006776 1.9e-46 189.9 174 55.2
CSS0042006 Camellia sinensis var. sinensis HOM05D005537 ORTHO05D006776 1.9e-46 189.9 172 57.6
CiPaw.08G029800 Carya illinoinensis HOM05D005537 ORTHO05D006776 3.2e-46 189.1 168 57.7
FAN17G0445 Fragaria x ananassa HOM05D005537 ORTHO05D006776 7.2e-46 188.0 174 53.4
Gorai.002G136300 Gossypium raimondii HOM05D005537 ORTHO05D006776 9.4e-46 187.6 174 54.0
Lju50A4T51 Lonicera japonica HOM05D005537 ORTHO05D006776 9.4e-46 187.6 191 53.4
FAN22G0220 Fragaria x ananassa HOM05D005537 ORTHO05D006776 1.6e-45 186.8 174 53.4
QL11p009893 Quercus lobata HOM05D005537 ORTHO05D006776 1.6e-45 186.8 179 52.0
Duzib093G2104 Durio zibethinus HOM05D005537 ORTHO05D006776 2.1e-45 186.4 174 53.4
RcHm_v2.0_Chr4g0398601 Rosa chinensis HOM05D005537 ORTHO05D006776 2.1e-45 186.4 174 54.0
Gorai.010G027600 Gossypium raimondii HOM05D005537 ORTHO05D006776 2.7e-45 186.0 174 51.7
Ciclev10010385m.g Citrus clementina HOM05D005537 ORTHO05D006776 3.6e-45 185.7 186 48.9
THA.LOC104799619 Tarenaya hassleriana HOM05D005537 ORTHO05D006776 3.6e-45 185.7 174 51.7
arahy.Tifrunner.gnm1.ann1.HQKU7C Arachis hypogaea HOM05D005537 ORTHO05D006776 7.9e-45 184.5 171 57.3
FAN07G2345 Fragaria x ananassa HOM05D005537 ORTHO05D006776 7.9e-45 184.5 174 52.9
Gohir.D06G023000 Gossypium hirsutum HOM05D005537 ORTHO05D006776 7.9e-45 184.5 174 51.1
vmacro19325 Vaccinium macrocarpon HOM05D005537 ORTHO05D006776 1.0e-44 184.1 177 51.4
Aa31LG1G14080 Aethionema arabicum HOM05D005537 ORTHO05D006776 1.4e-44 183.7 185 49.2
AL6G32140 Arabidopsis lyrata HOM05D005537 ORTHO05D006776 1.4e-44 183.7 185 49.2
VMungo1215G0900 Vigna mungo HOM05D005537 ORTHO05D006776 1.4e-44 183.7 175 53.7
Carub.0006s1893 Capsella rubella HOM05D005537 ORTHO05D006776 1.8e-44 183.3 185 49.7
Thecc.08G084500 Theobroma cacao HOM05D005537 ORTHO05D006776 1.8e-44 183.3 174 51.1
Glyma.13G103200 Glycine max HOM05D005537 ORTHO05D006776 3.0e-44 182.6 187 52.9
Gohir.A06G025900 Gossypium hirsutum HOM05D005537 ORTHO05D006776 3.0e-44 182.6 174 51.1
arahy.Tifrunner.gnm1.ann1.W452X0 Arachis hypogaea HOM05D005537 ORTHO05D006776 5.1e-44 181.8 171 56.7
COL.COLO4_28459 Corchorus olitorius HOM05D005537 ORTHO05D006776 6.7e-44 181.4 175 52.0
DCAR_017989 Daucus carota HOM05D005537 ORTHO05D006776 1.1e-43 180.6 175 52.0
GSVIVG01029258001 Vitis vinifera HOM05D008207 ORTHO05D010373 1.1e-43 180.6 169 55.6
Duzib041G0776 Durio zibethinus HOM05D005537 ORTHO05D006776 1.5e-43 180.3 174 51.7
AT5G20600 Arabidopsis thaliana HOM05D005537 ORTHO05D006776 2.0e-43 179.9 185 48.1
Thhalv10013208m.g Eutrema salsugineum HOM05D005537 ORTHO05D006776 2.5e-43 179.5 185 49.2
BcaC04g19447 Brassica carinata HOM05D005537 ORTHO05D006776 7.4e-43 177.9 179 50.3
BolC9t58429H Brassica oleracea HOM05D005537 ORTHO05D006776 7.4e-43 177.9 179 50.3
Medtr4g133100 Medicago truncatula HOM05D005537 ORTHO05D006776 7.4e-43 177.9 170 54.7
Sp6g23880 Schrenkiella parvula HOM05D005537 ORTHO05D006776 9.7e-43 177.6 180 49.4
C09p55630 Brassica napus HOM05D005537 ORTHO05D006776 1.3e-42 177.2 179 49.7
Rhsim08G0162000 Rhododendron simsii HOM05D005537 ORTHO05D006776 2.2e-42 176.4 171 51.5
RhsimUnG0132200 Rhododendron simsii HOM05D005537 ORTHO05D006776 2.2e-42 176.4 171 51.5
A10p19410 Brassica napus HOM05D005537 ORTHO05D006776 3.7e-42 175.6 179 49.7
BraA10t44018Z Brassica rapa HOM05D005537 ORTHO05D006776 3.7e-42 175.6 179 49.7
CARHR192210 Cardamine hirsuta HOM05D005537 ORTHO05D006776 6.3e-42 174.9 179 49.2
Cc06_g13120 Coffea canephora HOM05D005537 ORTHO05D006776 8.2e-42 174.5 186 51.1
HanXRQChr13g0401171 Helianthus annuus HOM05D005537 ORTHO05D006776 1.1e-41 174.1 168 52.4
SHI03078 Sapria himalayana HOM05D005537 ORTHO05D006776 1.1e-41 174.1 174 49.4
BcaB08g36512 Brassica carinata HOM05D005537 ORTHO05D006776 2.4e-41 172.9 180 49.4
Lj2g0020928 Lotus japonicus HOM05D005537 ORTHO05D006776 2.4e-41 172.9 176 51.7
Psat4g004960 Pisum sativum HOM05D005537 ORTHO05D006776 4.1e-41 172.2 170 52.4
ATR0580G047 Amborella trichopoda HOM05D005537 ORTHO05D006776 6.9e-41 171.4 164 49.4
Ca_21044_v3 Cicer arietinum L. HOM05D005537 ORTHO05D006776 1.2e-40 170.6 170 52.9
Lsat_1_v5_gn_6_25660 Lactuca sativa HOM05D005537 ORTHO05D006776 1.5e-40 170.2 168 51.2
BolC3t13639H Brassica oleracea HOM05D005537 ORTHO05D006776 2.0e-40 169.9 180 48.3
TPR.G37121 Trifolium pratense HOM05D005537 ORTHO05D006776 2.0e-40 169.9 176 50.6
PSO170G0047 Papaver somniferum HOM05D005537 ORTHO05D006776 3.4e-40 169.1 171 49.7
A03p10160 Brassica napus HOM05D005537 ORTHO05D006776 1.0e-39 167.5 174 48.9
BraA03t10326Z Brassica rapa HOM05D005537 ORTHO05D006776 1.0e-39 167.5 174 48.9
ECA233G0023 Erigeron canadensis HOM05D005537 ORTHO05D006776 1.0e-39 167.5 168 49.4
PSO063G7542 Papaver somniferum HOM05D005537 ORTHO05D006776 1.3e-39 167.2 171 49.7
Sabra12G0025000 Salix brachista HOM05D005537 ORTHO05D006776 2.2e-39 166.4 182 47.3
Potri.012G036500 Populus trichocarpa HOM05D005537 ORTHO05D006776 2.9e-39 166.0 181 47.0
Aqoxy5G04373 Aquilegia oxysepala HOM05D005537 ORTHO05D006776 3.8e-39 165.6 170 47.6
Nitab4.5_0004772g0040 Nicotiana tabacum HOM05D005537 ORTHO05D006776 9.4e-38 161.0 167 52.1
CDE05G3054 Ceratophyllum demersum HOM05D005537 ORTHO05D006776 1.6e-37 160.2 170 47.6
Lju432C4G13 Lonicera japonica HOM05D005537 ORTHO05D006776 4.7e-37 158.7 154 55.2
Nitab4.5_0000055g0260 Nicotiana tabacum HOM05D005537 ORTHO05D006776 4.7e-37 158.7 167 51.5
Sabra15G0023400 Salix brachista HOM05D005537 ORTHO05D006776 4.7e-37 158.7 174 46.0
Solyc07g017940.1 Solanum lycopersicum HOM05D005537 ORTHO05D006776 7.9e-37 157.9 169 48.5
Sopen07g006800 Solanum pennellii HOM05D005537 ORTHO05D006776 1.0e-36 157.5 169 48.5
PGSC0003DMG400004098 Solanum tuberosum HOM05D005537 ORTHO05D006776 1.4e-36 157.1 169 47.3
Peaxi162Scf00231g10125 Petunia axillaris HOM05D005537 ORTHO05D006776 2.3e-36 156.4 177 45.8
Sc18g0003000 Simmondsia chinensis HOM05D005537 ORTHO05D006776 3.0e-36 156.0 171 50.3
CDE05G2659 Ceratophyllum demersum HOM05D005537 ORTHO05D006776 3.9e-36 155.6 170 47.1
C03p11680 Brassica napus HOM05D002335 ORTHO05D006282 2.8e-34 149.4 149 51.0
AUR62021325 Chenopodium quinoa HOM05D005537 ORTHO05D006776 1.4e-33 147.1 173 46.8
Ah.09g230210 Amaranthus hybridus HOM05D005537 ORTHO05D006776 2.4e-33 146.4 175 46.3
Cc00_g32040 Coffea canephora HOM05D005537 ORTHO05D006776 7.0e-33 144.8 139 51.8
Psat2g005880 Pisum sativum HOM05D005537 ORTHO05D006776 2.6e-32 142.9 177 46.9
MSTRG.26216 Avicennia marina HOM05D005537 ORTHO05D006776 1.3e-31 140.6 166 45.2
SGA_v2.0_scaffold12G06075 Striga asiatica HOM05D005537 ORTHO05D006776 1.3e-31 140.6 166 46.4
Migut.K00238 Erythranthe guttata HOM05D005537 ORTHO05D006776 2.9e-31 139.4 165 45.5
Mapoly0006s0254 Marchantia polymorpha HOM05D005537 ORTHO05D006776 2.9e-31 139.4 171 42.7
unitig_899.g15473 Utricularia gibba HOM05D005537 ORTHO05D006776 6.5e-31 138.3 176 43.8
SGA_v2.0_scaffold17G07935 Striga asiatica HOM05D005537 ORTHO05D006776 1.1e-30 137.5 166 44.6
HPP92_018575 Vanilla planifolia HOM05D005537 ORTHO05D006776 5.5e-30 135.2 171 42.7
SEGI_41129 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 9.4e-30 134.4 168 41.7
CAN.G1186.23 Capsicum annuum HOM05D005537 ORTHO05D006776 1.6e-29 133.7 170 44.7
MBI14_g19455_MAGBIO Magnolia biondii HOM05D005537 ORTHO05D006776 4.7e-29 132.1 134 50.0
Psat2g005840 Pisum sativum HOM05D005537 ORTHO05D006776 1.4e-28 130.6 165 44.8
TPR.G1254 Trifolium pratense HOM05D005537 ORTHO05D006776 1.8e-28 130.2 162 43.8
SMO012G0033 Selaginella moellendorffii HOM05D005537 ORTHO05D006776 4.0e-28 129.0 164 40.9
unitig_746.g26559 Utricularia gibba HOM05D005537 ORTHO05D006776 5.2e-28 128.6 166 42.2
Pp3c12_970 Physcomitrium patens HOM05D005537 ORTHO05D006776 1.1e-27 127.5 181 38.7
Pp3c17_1280 Physcomitrium patens HOM05D005537 ORTHO05D006776 1.1e-27 127.5 170 39.4
BcaB01g04778 Brassica carinata HOM05D005537 ORTHO05D006776 1.7e-26 123.6 170 39.4
Cre01.g019200 Chlamydomonas reinhardtii HOM05D005537 ORTHO05D006776 3.7e-26 122.5 153 43.8
SEGI_27163 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 3.1e-25 119.4 164 39.0
AagrBONN_evm.TU.Sc2ySwM_228.2028 Anthoceros agrestis HOM05D005537 ORTHO05D006776 4.5e-24 115.5 176 39.2
FvH4_5g34681 Fragaria vesca HOM05D005537 ORTHO05D006776 2.9e-23 112.8 91 59.3
Os04g0658600 Oryza sativa ssp. japonica HOM05D005537 ORTHO05D006776 2.5e-22 109.8 168 36.9
Actinidia01575 Actinidia chinensis HOM05D005537 ORTHO05D006776 3.0e-20 102.8 100 50.0
Zm00001eb067650 Zea mays HOM05D005537 ORTHO05D006776 6.8e-20 101.7 168 35.1
Zm00001eb432550 Zea mays HOM05D005537 ORTHO05D006776 1.2e-19 100.9 168 35.7
Nn8g40421 Nelumbo nucifera HOM05D005537 ORTHO05D006776 1.7e-18 97.1 164 33.5
CBR_g32208 Chara braunii HOM05D005537 ORTHO05D006776 1.8e-17 93.6 172 34.3
FvH4_2g25020 Fragaria vesca HOM05D005537 ORTHO05D006776 1.7e-15 87.0 73 52.1
FAN24G0683 Fragaria x ananassa HOM05D005537 ORTHO05D006776 1.7e-15 87.0 73 52.1
MCO12G389 Micromonas commoda HOM05D005537 ORTHO05D006776 1.1e-14 84.3 166 31.3
PRCOL_00002161 Prasinoderma coloniale HOM05D005537 ORTHO05D006776 1.4e-12 77.4 132 33.3
MSTRG.6231 Avicennia marina HOM05D005537 ORTHO05D006776 1.1e-06 57.8 83 41.0


User provided reference genes

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