Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C020109.2 Cucumis melo HOM05D002744 ORTHO05D006546 2.4e-193 678.7 360 100.0
CsaV3_5G010730 Cucumis sativus L. HOM05D002744 ORTHO05D006546 3.5e-184 648.3 360 95.0
ClCG00G004700 Citrullus lanatus HOM05D002744 ORTHO05D006546 3.3e-182 641.7 360 94.2
ClCG06G010230 Citrullus lanatus HOM05D002744 ORTHO05D006546 3.3e-182 641.7 360 94.2
ClCG07G004810 Citrullus lanatus HOM05D002744 ORTHO05D006546 4.5e-179 631.3 360 92.5
Sed0016960 Sechium edule HOM05D002744 ORTHO05D006546 2.3e-159 565.8 357 83.5
CiPaw.02G197400 Carya illinoinensis HOM05D002744 ORTHO05D006546 3.7e-133 478.8 365 69.3
QL08p064289 Quercus lobata HOM05D002744 ORTHO05D006546 4.8e-133 478.4 362 70.4
Dinv21810 Davidia involucrata HOM05D002744 ORTHO05D006546 9.1e-132 474.2 367 70.6
Cc02_g05710 Coffea canephora HOM05D002744 ORTHO05D006546 4.5e-131 471.9 366 69.9
CSS0032617 Camellia sinensis var. sinensis HOM05D002744 ORTHO05D006546 3.8e-130 468.8 367 69.8
GSVIVG01032722001 Vitis vinifera HOM05D002744 ORTHO05D006546 1.9e-129 466.5 366 69.1
Hma1.2p1_1240F.1_g269620 Hydrangea macrophylla HOM05D002744 ORTHO05D006546 3.2e-129 465.7 361 69.3
Prupe.2G259600 Prunus persica HOM05D002744 ORTHO05D006546 4.2e-129 465.3 363 68.3
Haze_17322 Corylus avellana HOM05D002744 ORTHO05D006546 9.4e-129 464.2 382 67.0
Actinidia00987 Actinidia chinensis HOM05D002744 ORTHO05D006546 2.7e-128 462.6 367 69.2
Glyma.02G230100 Glycine max HOM05D002744 ORTHO05D006546 6.8e-127 458.0 359 67.1
Duzib106G0255 Durio zibethinus HOM05D002744 ORTHO05D006546 8.8e-127 457.6 367 67.0
Glyma.14G196400 Glycine max HOM05D002744 ORTHO05D006546 8.8e-127 457.6 365 67.9
MBI16_g02735_MAGBIO Magnolia biondii HOM05D002744 ORTHO05D006546 1.2e-126 457.2 362 68.2
Rhsim09G0183300 Rhododendron simsii HOM05D002744 ORTHO05D006546 9.8e-126 454.1 385 65.7
Potri.008G075700 Populus trichocarpa HOM05D002744 ORTHO05D006546 1.8e-124 449.9 370 66.8
vmacro09982 Vaccinium macrocarpon HOM05D002744 ORTHO05D006546 1.8e-124 449.9 382 65.4
RcHm_v2.0_Chr1g0371491 Rosa chinensis HOM05D002744 ORTHO05D006546 3.1e-124 449.1 364 65.1
DCAR_011892 Daucus carota HOM05D002744 ORTHO05D006546 7.0e-124 448.0 361 65.9
Eucgr.J00153 Eucalyptus grandis HOM05D002744 ORTHO05D006546 7.0e-124 448.0 362 68.2
Lsat_1_v5_gn_2_125961 Lactuca sativa HOM05D002744 ORTHO05D006546 1.2e-123 447.2 356 69.4
FAN10G0428 Fragaria x ananassa HOM05D002744 ORTHO05D006546 2.7e-123 446.0 355 66.5
TAR623G1472 Trochodendron aralioides HOM05D002744 ORTHO05D006546 4.5e-123 445.3 358 66.2
FvH4_7g25510 Fragaria vesca HOM05D002744 ORTHO05D006546 5.9e-123 444.9 363 64.7
VMungo0647G1938 Vigna mungo HOM05D002744 ORTHO05D006546 5.9e-123 444.9 358 66.5
MD07G1229400 Malus domestica HOM05D002744 ORTHO05D006546 7.7e-123 444.5 363 66.1
FAN01G1994 Fragaria x ananassa HOM05D002744 ORTHO05D006546 1.0e-122 444.1 355 66.2
Nitab4.5_0000928g0070 Nicotiana tabacum HOM05D002744 ORTHO05D006546 1.7e-122 443.4 361 66.2
Nn2g11076 Nelumbo nucifera HOM05D002744 ORTHO05D006546 2.2e-122 443.0 364 66.5
Ca_06017_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 6.5e-122 441.4 367 66.2
Manes.07G139400 Manihot esculenta HOM05D002744 ORTHO05D006546 6.5e-122 441.4 371 67.4
Gohir.D10G253000 Gossypium hirsutum HOM05D002744 ORTHO05D006546 8.5e-122 441.0 366 65.3
PGR044G1552 Punica granatum HOM05D002744 ORTHO05D006546 8.5e-122 441.0 366 65.3
Thecc.10G007000 Theobroma cacao HOM05D002744 ORTHO05D006546 8.5e-122 441.0 367 64.9
CDE04G1223 Ceratophyllum demersum HOM05D002744 ORTHO05D006546 1.5e-121 440.3 363 64.2
HanXRQChr10g0309081 Helianthus annuus HOM05D002744 ORTHO05D006546 1.5e-121 440.3 357 65.8
Gohir.A10G240800 Gossypium hirsutum HOM05D002744 ORTHO05D006546 1.9e-121 439.9 366 65.0
PGSC0003DMG400024457 Solanum tuberosum HOM05D002744 ORTHO05D006546 3.2e-121 439.1 366 64.8
Phvul.008G258300 Phaseolus vulgaris HOM05D002744 ORTHO05D006546 4.2e-121 438.7 361 65.7
MSTRG.5049 Avicennia marina HOM05D002744 ORTHO05D006546 7.2e-121 438.0 373 64.6
Psat0s1511g0040 Pisum sativum HOM05D002744 ORTHO05D006546 9.4e-121 437.6 360 65.8
Gorai.011G293300 Gossypium raimondii HOM05D002744 ORTHO05D006546 1.2e-120 437.2 364 64.8
FAN03G1008 Fragaria x ananassa HOM05D002744 ORTHO05D006546 2.1e-120 436.4 371 63.1
MD01G1161500 Malus domestica HOM05D002744 ORTHO05D006546 2.7e-120 436.0 363 65.0
FAN06G0491 Fragaria x ananassa HOM05D002744 ORTHO05D006546 4.7e-120 435.3 371 62.8
HanXRQChr07g0186551 Helianthus annuus HOM05D002744 ORTHO05D006546 1.8e-119 433.3 364 64.8
Lalb_Chr17g0336941 Lupinus albus HOM05D002744 ORTHO05D006546 5.2e-119 431.8 367 63.5
Lj1C963G12 Lonicera japonica HOM05D002744 ORTHO05D006546 2.0e-118 429.9 364 64.8
SGA_v2.0_scaffold5G02937 Striga asiatica HOM05D000129 ORTHO05D000144 2.0e-118 429.9 366 64.2
LjContig00357g0012394 Lotus japonicus HOM05D002744 ORTHO05D006546 2.6e-118 429.5 366 64.8
ECA238G3482 Erigeron canadensis HOM05D002744 ORTHO05D006546 4.4e-118 428.7 360 65.6
Sopen02g017560 Solanum pennellii HOM05D002744 ORTHO05D006546 9.8e-118 427.6 363 64.7
Solyc02g068420.4 Solanum lycopersicum HOM05D002744 ORTHO05D006546 1.7e-117 426.8 363 64.7
PGSC0003DMG400009431 Solanum tuberosum HOM05D002744 ORTHO05D006546 3.7e-117 425.6 363 64.5
Nitab4.5_0000263g0070 Nicotiana tabacum HOM05D002744 ORTHO05D006546 8.3e-117 424.5 395 60.0
Ciclev10031901m.g Citrus clementina HOM05D002744 ORTHO05D006546 1.1e-116 424.1 369 65.0
CANSAT56G2377 Cannabis sativa HOM05D002744 ORTHO05D006546 4.1e-116 422.2 362 62.4
Actinidia07807 Actinidia chinensis HOM05D002744 ORTHO05D006546 1.2e-115 420.6 365 63.6
Sc10g0002810 Simmondsia chinensis HOM05D002744 ORTHO05D006546 4.5e-115 418.7 370 63.8
Lj1g0011333 Lotus japonicus HOM05D002744 ORTHO05D006546 1.3e-114 417.2 380 62.1
Migut.N01809 Erythranthe guttata HOM05D002744 ORTHO05D006546 2.9e-114 416.0 370 61.4
CSS0017108 Camellia sinensis var. sinensis HOM05D002744 ORTHO05D006546 8.6e-114 414.5 363 63.4
PSO832G1082 Papaver somniferum HOM05D002744 ORTHO05D006546 8.6e-114 414.5 378 60.3
PSO210G7497 Papaver somniferum HOM05D002744 ORTHO05D006546 1.5e-113 413.7 378 60.1
THA.LOC104824347 Tarenaya hassleriana HOM05D002744 ORTHO05D006546 1.2e-112 410.6 363 64.7
Sabra08G0056300 Salix brachista HOM05D002744 ORTHO05D006546 8.0e-112 407.9 430 55.1
Aqoxy2G00754 Aquilegia oxysepala HOM05D002744 ORTHO05D006546 1.8e-111 406.8 366 61.7
Os05g0144200 Oryza sativa ssp. japonica HOM05D002744 ORTHO05D006546 1.5e-110 403.7 392 59.9
THA.LOC104814944 Tarenaya hassleriana HOM05D002744 ORTHO05D006546 1.7e-109 400.2 377 61.8
COL.COLO4_25825 Corchorus olitorius HOM05D002744 ORTHO05D006546 1.1e-108 397.5 341 64.5
Peaxi162Scf00284g00133 Petunia axillaris HOM05D002744 ORTHO05D006546 7.0e-108 394.8 362 60.8
Ah.05g176210 Amaranthus hybridus HOM05D002744 ORTHO05D006546 5.0e-106 388.7 370 60.8
Hund13511 Selenicereus undatus HOM05D002744 ORTHO05D006546 7.3e-105 384.8 368 59.0
HPP92_001733 Vanilla planifolia HOM05D002744 ORTHO05D006546 2.1e-104 383.3 365 59.2
Carub.0004s2268 Capsella rubella HOM05D002744 ORTHO05D006546 6.1e-104 381.7 386 58.5
CARHR135540 Cardamine hirsuta HOM05D002744 ORTHO05D006546 1.0e-103 380.9 369 61.0
Zm00001eb417890 Zea mays HOM05D002744 ORTHO05D006546 1.0e-103 380.9 393 56.5
Thhalv10016839m.g Eutrema salsugineum HOM05D002744 ORTHO05D006546 2.0e-102 376.7 369 59.1
Aa31LG5G19130 Aethionema arabicum HOM05D002744 ORTHO05D006546 9.8e-102 374.4 374 58.8
TPR.G14721 Trifolium pratense HOM05D002744 ORTHO05D006546 4.9e-101 372.1 365 58.1
TWI56G0434 Tripterygium wilfordii HOM05D002744 ORTHO05D006546 4.9e-101 372.1 369 60.7
EL10Ac2g04290 Beta vulgaris HOM05D002744 ORTHO05D006546 6.4e-101 371.7 363 58.1
AL4G38260 Arabidopsis lyrata HOM05D002744 ORTHO05D006546 1.9e-100 370.2 431 52.7
Sp4g22770 Schrenkiella parvula HOM05D002744 ORTHO05D006546 5.4e-100 368.6 388 56.4
Medtr5g083780 Medicago truncatula HOM05D002744 ORTHO05D006546 9.2e-100 367.9 366 57.7
SalBow1G3835 Salvia bowleyana HOM05D002744 ORTHO05D006546 2.0e-99 366.7 345 60.6
arahy.Tifrunner.gnm1.ann1.T368MT Arachis hypogaea HOM05D002744 ORTHO05D006546 3.0e-98 362.8 362 55.5
arahy.Tifrunner.gnm1.ann1.G9S3DZ Arachis hypogaea HOM05D002744 ORTHO05D006546 5.0e-98 362.1 362 55.8
AUR62012335 Chenopodium quinoa HOM05D002744 ORTHO05D006546 1.2e-96 357.5 366 56.6
SalBow8G4474 Salvia bowleyana HOM05D002744 ORTHO05D006546 1.6e-96 357.1 371 56.6
ATR1127G109 Amborella trichopoda HOM05D002744 ORTHO05D006546 2.8e-96 356.3 343 57.7
SalBow8G2269 Salvia bowleyana HOM05D002744 ORTHO05D006546 6.2e-96 355.1 371 56.3
SEGI_20256 Sequoiadendron giganteum HOM05D002744 ORTHO05D006546 2.3e-95 353.2 368 53.5
BcaB06g29140 Brassica carinata HOM05D002744 ORTHO05D006546 3.1e-95 352.8 388 55.4
AUR62022979 Chenopodium quinoa HOM05D002744 ORTHO05D006546 5.2e-95 352.1 372 56.5
BcaC02g12712 Brassica carinata HOM05D002744 ORTHO05D006546 2.0e-94 350.1 385 54.3
A05p01680 Brassica napus HOM05D002744 ORTHO05D006546 4.9e-93 345.5 383 54.6
BraA05t19165Z Brassica rapa HOM05D002744 ORTHO05D006546 4.9e-93 345.5 383 54.6
CDE03G0451 Ceratophyllum demersum HOM05D002744 ORTHO05D006546 3.0e-90 336.3 365 54.8
BraA04t18540Z Brassica rapa HOM05D002744 ORTHO05D006546 4.7e-88 328.9 391 53.5
unitig_27.g25095 Utricularia gibba HOM05D002744 ORTHO05D006546 3.1e-87 326.2 359 53.2
C04p68230 Brassica napus HOM05D002744 ORTHO05D006546 1.5e-86 323.9 381 52.5
BolC4t28327H Brassica oleracea HOM05D002744 ORTHO05D006546 1.5e-86 323.9 381 52.5
A04p30810 Brassica napus HOM05D002744 ORTHO05D006546 3.7e-85 319.3 387 52.5
BolC4t21844H Brassica oleracea HOM05D002744 ORTHO05D006546 4.9e-85 318.9 384 51.6
BcaC02g07313 Brassica carinata HOM05D002744 ORTHO05D006546 1.9e-84 317.0 381 52.0
C04p01940 Brassica napus HOM05D002744 ORTHO05D006546 3.2e-84 316.2 382 51.6
Cpa.g.sc19.99 Carica papaya HOM05D002744 ORTHO05D008989 5.1e-74 282.3 309 54.7
Mapoly0001s0132 Marchantia polymorpha HOM05D002744 ORTHO05D006546 8.1e-72 275.0 390 42.1
AT2G40430 Arabidopsis thaliana HOM05D002744 ORTHO05D006546 6.4e-69 265.4 359 49.6
CAN.G39.17 Capsicum annuum HOM05D002744 ORTHO05D006546 6.4e-69 265.4 242 61.6
Oeu026182.1 Olea europaea HOM05D002744 ORTHO05D006546 5.4e-68 262.3 237 62.4
Ca_06977_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 7.6e-62 241.9 187 66.8
AagrBONN_evm.TU.Sc2ySwM_344.2566 Anthoceros agrestis HOM05D002744 ORTHO05D006546 1.7e-61 240.7 350 42.0
Ca_27928_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 1.1e-60 238.0 300 50.0
CBR_g88544 Chara braunii HOM05D002744 ORTHO05D006546 9.6e-57 224.9 439 36.0
SHI18675 Sapria himalayana HOM05D002744 ORTHO05D006546 9.0e-55 218.4 260 50.4
MBI16_g06795_MAGBIO Magnolia biondii HOM05D002744 ORTHO05D018022 9.0e-47 191.8 224 52.2
Pp3c22_7700 Physcomitrium patens HOM05D002744 ORTHO05D006546 8.4e-45 185.3 363 34.7
Oeu017758.1 Olea europaea HOM05D002744 ORTHO05D006546 2.0e-38 164.1 119 67.2
CAN.G39.16 Capsicum annuum HOM05D002744 ORTHO05D006546 2.6e-38 163.7 124 67.7
Solyc06g050820.3 Solanum lycopersicum HOM05D002744 ORTHO05D006546 2.2e-37 160.6 153 58.8
PRCOL_00000452 Prasinoderma coloniale HOM05D002744 ORTHO05D006546 2.1e-19 100.9 398 28.1
MCO01G055 Micromonas commoda HOM05D002744 ORTHO05D006546 4.0e-18 96.7 436 24.1
HanXRQChr04g0102991 Helianthus annuus HOM05D002744 ORTHO05D006546 1.1e-17 95.1 63 73.0
Aqoxy466s002 Aquilegia oxysepala HOM05D002744 ORTHO05D006546 1.3e-16 91.7 117 48.7
Atru.chr12.137 Acer truncatum HOM05D002744 ORTHO05D006546 2.2e-16 90.9 56 82.1
AUR62042571 Chenopodium quinoa HOM05D002744 ORTHO05D006546 4.8e-16 89.7 100 50.0
Cre07.g348250 Chlamydomonas reinhardtii HOM05D002744 ORTHO05D006546 2.0e-14 84.3 511 24.7
SHI18673 Sapria himalayana HOM05D002744 ORTHO05D006546 5.9e-14 82.8 56 71.4
Lsat_1_v5_gn_5_82241 Lactuca sativa HOM05D002744 ORTHO05D006546 1.9e-12 77.8 50 76.0
Cfa025636 Carpinus fangiana HOM05D002744 ORTHO05D006546 1.2e-11 75.1 415 26.7
arahy.Tifrunner.gnm1.ann1.LJQ8FI Arachis hypogaea HOM05D002744 ORTHO05D006546 8.0e-11 72.4 59 64.4
arahy.Tifrunner.gnm1.ann1.WF3XAB Arachis hypogaea HOM05D002744 ORTHO05D006546 1.0e-10 72.0 61 62.3
arahy.Tifrunner.gnm1.ann1.XR4RRM Arachis hypogaea HOM05D002744 ORTHO05D006546 2.3e-10 70.9 61 62.3
arahy.Tifrunner.gnm1.ann1.U77MTX Arachis hypogaea HOM05D002744 ORTHO05D006546 2.0e-09 67.8 60 60.0


User provided reference genes

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