Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C019719.2 Cucumis melo HOM05D005800 ORTHO05D007636 3.0e-301 1037.7 521 100.0
CsaV3_6G015560 Cucumis sativus L. HOM05D005800 ORTHO05D007636 1.4e-234 816.2 539 80.9
ClCG02G018170 Citrullus lanatus HOM05D005800 ORTHO05D007636 7.0e-218 760.8 535 75.3
Sed0019308 Sechium edule HOM05D005800 ORTHO05D007636 1.3e-195 686.8 532 69.2
Haze_12748 Corylus avellana HOM05D005800 ORTHO05D007636 8.2e-150 534.6 515 56.7
QL08p029973 Quercus lobata HOM05D005800 ORTHO05D007636 4.1e-149 532.3 510 56.3
Cfa014300 Carpinus fangiana HOM05D005800 ORTHO05D007636 5.0e-147 525.4 515 55.7
CiPaw.04G192600 Carya illinoinensis HOM05D005800 ORTHO05D007636 6.5e-147 525.0 495 57.2
Thecc.01G184600 Theobroma cacao HOM05D005800 ORTHO05D007636 2.5e-146 523.1 493 57.4
Atru.chr6.3277 Acer truncatum HOM05D005800 ORTHO05D007636 8.0e-145 518.1 495 56.6
TWI18G1217 Tripterygium wilfordii HOM05D005800 ORTHO05D007636 1.4e-144 517.3 495 57.0
Gorai.001G218100 Gossypium raimondii HOM05D005800 ORTHO05D007636 2.3e-144 516.5 509 55.0
Duzib211G0019 Durio zibethinus HOM05D005800 ORTHO05D007636 3.9e-144 515.8 507 55.8
Ciclev10018214m.g Citrus clementina HOM05D005800 ORTHO05D007636 1.1e-143 514.2 498 54.6
Gohir.D07G194900 Gossypium hirsutum HOM05D005800 ORTHO05D007636 2.0e-143 513.5 509 54.6
Prupe.3G208000 Prunus persica HOM05D005800 ORTHO05D007636 2.6e-143 513.1 508 55.1
Atru.chr6.3292 Acer truncatum HOM05D005800 ORTHO05D007636 4.4e-143 512.3 495 56.2
Rhsim04G0046700 Rhododendron simsii HOM05D005800 ORTHO05D007636 4.4e-143 512.3 506 55.9
GSVIVG01030530001 Vitis vinifera HOM05D005800 ORTHO05D007636 2.8e-142 509.6 494 55.5
CSS0040237 Camellia sinensis var. sinensis HOM05D005800 ORTHO05D007636 1.4e-141 507.3 528 54.2
Potri.014G160300 Populus trichocarpa HOM05D005800 ORTHO05D007636 2.4e-141 506.5 496 55.4
CSS0012074 Camellia sinensis var. sinensis HOM05D005800 ORTHO05D007636 3.1e-141 506.1 509 55.4
MD09G1116800 Malus domestica HOM05D005800 ORTHO05D007636 5.3e-141 505.4 499 54.9
vmacro09372 Vaccinium macrocarpon HOM05D005800 ORTHO05D007636 2.0e-140 503.4 512 55.1
PGR142G3833 Punica granatum HOM05D005800 ORTHO05D007636 1.0e-139 501.1 492 55.7
CANSAT64G1164 Cannabis sativa HOM05D005800 ORTHO05D007636 2.9e-139 499.6 494 52.2
FAN09G4368 Fragaria x ananassa HOM05D005800 ORTHO05D007636 2.5e-138 496.5 508 53.7
FAN14G5087 Fragaria x ananassa HOM05D005800 ORTHO05D007636 3.6e-137 492.7 504 54.4
TPR.G17115 Trifolium pratense HOM05D005800 ORTHO05D007636 1.8e-136 490.3 495 52.1
Manes.12G056701 Manihot esculenta HOM05D005800 ORTHO05D007636 2.3e-136 490.0 516 54.1
Solyc07g049740.4 Solanum lycopersicum HOM05D005800 ORTHO05D007636 2.3e-136 490.0 498 53.0
Peaxi162Scf00007g00131 Petunia axillaris HOM05D005800 ORTHO05D007636 4.0e-136 489.2 511 53.0
PGSC0003DMG400001079 Solanum tuberosum HOM05D005800 ORTHO05D007636 5.2e-136 488.8 498 52.8
Sopen07g025360 Solanum pennellii HOM05D005800 ORTHO05D007636 1.5e-135 487.3 498 52.8
Glyma.02G100600 Glycine max HOM05D005800 ORTHO05D007636 2.6e-135 486.5 505 51.1
Phvul.003G026900 Phaseolus vulgaris HOM05D005800 ORTHO05D007636 2.6e-135 486.5 500 51.2
Actinidia29202 Actinidia chinensis HOM05D005800 ORTHO05D007636 3.4e-135 486.1 505 52.7
Nn1g07331 Nelumbo nucifera HOM05D005800 ORTHO05D007636 4.4e-135 485.7 493 53.5
Lj3g0013009 Lotus japonicus HOM05D005800 ORTHO05D007636 5.7e-135 485.3 526 50.2
Sabra14G0122000 Salix brachista HOM05D005800 ORTHO05D007636 2.2e-134 483.4 458 55.7
Ca_23308_v3 Cicer arietinum L. HOM05D005800 ORTHO05D007636 3.7e-134 482.6 495 51.3
PSO541G2790 Papaver somniferum HOM05D005800 ORTHO05D007636 3.7e-134 482.6 532 52.6
Nitab4.5_0000130g0280 Nicotiana tabacum HOM05D005800 ORTHO05D007636 6.3e-134 481.9 495 52.7
THA.LOC104826609 Tarenaya hassleriana HOM05D005800 ORTHO05D007636 1.1e-133 481.1 524 52.9
Nitab4.5_0008855g0020 Nicotiana tabacum HOM05D005800 ORTHO05D007636 1.4e-133 480.7 510 51.8
Sc05g0006280 Simmondsia chinensis HOM05D005800 ORTHO05D007636 1.4e-133 480.7 530 50.0
Medtr8g012965 Medicago truncatula HOM05D005800 ORTHO05D007636 4.1e-133 479.2 516 49.4
arahy.Tifrunner.gnm1.ann1.ED2J4B Arachis hypogaea HOM05D005800 ORTHO05D007636 5.3e-133 478.8 495 50.7
arahy.Tifrunner.gnm1.ann1.WU8RVJ Arachis hypogaea HOM05D005800 ORTHO05D007636 5.3e-133 478.8 495 50.5
Cc05_g03680 Coffea canephora HOM05D005800 ORTHO05D007636 2.0e-132 476.9 461 54.0
Lsat_1_v5_gn_9_105061 Lactuca sativa HOM05D005800 ORTHO05D007636 2.7e-132 476.5 516 51.0
AUR62015110 Chenopodium quinoa HOM05D005800 ORTHO05D007636 7.7e-132 474.9 485 53.4
Migut.F00824 Erythranthe guttata HOM05D005800 ORTHO05D007636 2.1e-129 466.8 490 53.1
AUR62017573 Chenopodium quinoa HOM05D005800 ORTHO05D007636 3.6e-129 466.1 529 50.5
VMungo1127G1618 Vigna mungo HOM05D005800 ORTHO05D007636 8.0e-129 464.9 503 49.7
Nitab4.5_0004549g0020 Nicotiana tabacum HOM05D005800 ORTHO05D007636 5.7e-127 458.8 483 52.2
Aa31sc76G50 Aethionema arabicum HOM05D005800 ORTHO05D007636 9.8e-127 458.0 511 49.7
SGA_v2.0_scaffold90G27705 Striga asiatica HOM05D005800 ORTHO05D007636 1.7e-126 457.2 492 52.0
AL3G42200 Arabidopsis lyrata HOM05D005800 ORTHO05D007636 2.2e-126 456.8 514 49.8
Aqoxy6G02415 Aquilegia oxysepala HOM05D005800 ORTHO05D007636 3.7e-126 456.1 495 50.7
Oeu012678.1 Olea europaea HOM05D005800 ORTHO05D007636 3.7e-126 456.1 456 54.8
AT2G04560 Arabidopsis thaliana HOM05D005800 ORTHO05D007636 4.8e-126 455.7 514 49.4
Thhalv10002525m.g Eutrema salsugineum HOM05D005800 ORTHO05D007636 5.9e-124 448.7 516 49.4
EL10Ac9g22808 Beta vulgaris HOM05D005800 ORTHO05D007636 7.7e-124 448.4 463 52.3
Carub.0003s2619 Capsella rubella HOM05D005800 ORTHO05D007636 1.0e-123 448.0 512 49.0
BcaB06g26821 Brassica carinata HOM05D005800 ORTHO05D007636 8.6e-123 444.9 514 48.2
BcaC06g35880 Brassica carinata HOM05D005800 ORTHO05D007636 1.1e-122 444.5 510 49.6
BolC7t41459H Brassica oleracea HOM05D005800 ORTHO05D007636 1.1e-122 444.5 510 49.8
C07p10140 Brassica napus HOM05D005800 ORTHO05D007636 9.5e-122 441.4 510 49.6
A07p06670 Brassica napus HOM05D005800 ORTHO05D007636 1.6e-121 440.7 510 50.2
Dinv39768 Davidia involucrata HOM05D005800 ORTHO05D007636 2.8e-121 439.9 462 51.9
Hund24186 Selenicereus undatus HOM05D005800 ORTHO05D007636 6.1e-121 438.7 547 46.3
Gohir.A07G188100 Gossypium hirsutum HOM05D005800 ORTHO05D007636 1.4e-120 437.6 357 62.5
BraA07t28458Z Brassica rapa HOM05D005800 ORTHO05D007636 9.8e-119 431.4 541 47.3
ATR1128G089 Amborella trichopoda HOM05D005800 ORTHO05D007636 1.4e-117 427.6 485 48.0
ECA240G1426 Erigeron canadensis HOM05D005800 ORTHO05D007636 1.8e-117 427.2 501 48.1
Rhsim04G0047300 Rhododendron simsii HOM05D005800 ORTHO05D007636 1.3e-115 421.0 498 50.0
Zm00001eb153480 Zea mays HOM05D005800 ORTHO05D007636 2.9e-115 419.9 531 44.4
DCAR_021128 Daucus carota HOM05D005800 ORTHO05D007636 3.3e-114 416.4 720 37.5
Dinv39765 Davidia involucrata HOM05D005800 ORTHO05D007636 2.8e-113 413.3 494 47.2
Cpa.g.sc132.41 Carica papaya HOM05D005800 ORTHO05D007636 2.3e-112 410.2 503 47.3
Os01g0752600 Oryza sativa ssp. japonica HOM05D005800 ORTHO05D007636 4.0e-112 409.5 493 45.2
SEGI_21918 Sequoiadendron giganteum HOM05D005800 ORTHO05D007636 3.7e-110 402.9 489 46.2
HPP92_010001 Vanilla planifolia HOM05D005800 ORTHO05D007636 2.0e-108 397.1 484 47.5
RcHm_v2.0_Chr2g0157701 Rosa chinensis HOM05D005800 ORTHO05D007636 2.4e-101 373.6 313 62.3
Rhsim04G0046900 Rhododendron simsii HOM05D005800 ORTHO05D007636 6.0e-100 369.0 511 46.0
Dinv39767 Davidia involucrata HOM05D005800 ORTHO05D007636 1.9e-98 364.0 416 51.0
Lalb_Chr07g0194251 Lupinus albus HOM05D005800 ORTHO05D007636 1.6e-97 360.9 382 49.5
Pp3c10_3220 Physcomitrium patens HOM05D005800 ORTHO05D007636 6.8e-96 355.5 486 42.2
Eucgr.K00731 Eucalyptus grandis HOM05D005800 ORTHO05D007636 2.2e-94 350.5 358 52.8
FvH4_6g41870 Fragaria vesca HOM05D005800 ORTHO05D007636 2.7e-92 343.6 379 50.7
MSTRG.9018 Avicennia marina HOM05D005800 ORTHO05D007636 2.8e-89 333.6 297 59.9
SMO356G0467 Selaginella moellendorffii HOM05D005800 ORTHO05D007636 6.2e-89 332.4 430 41.2
AagrBONN_evm.TU.Sc2ySwM_228.127 Anthoceros agrestis HOM05D005800 ORTHO05D007636 8.9e-88 328.6 429 42.4
CARHR102490 Cardamine hirsuta HOM05D005800 ORTHO05D007636 8.9e-88 328.6 301 57.8
HanXRQChr14g0429261 Helianthus annuus HOM05D005800 ORTHO05D007636 1.2e-87 328.2 300 57.3
Sp3g23350 Schrenkiella parvula HOM05D005800 ORTHO05D007636 3.8e-86 323.2 301 56.8
CAN.G290.4 Capsicum annuum HOM05D005800 ORTHO05D007636 7.1e-85 318.9 360 48.6
Rhsim04G0049100 Rhododendron simsii HOM05D005800 ORTHO05D007636 1.6e-84 317.8 441 44.7
CDE04G1587 Ceratophyllum demersum HOM05D005800 ORTHO05D007636 6.9e-80 302.4 514 37.5
Pp3c10_3060 Physcomitrium patens HOM05D005800 ORTHO05D007636 2.0e-79 300.8 447 40.3
FAN02G2441 Fragaria x ananassa HOM05D005800 ORTHO05D007636 1.9e-69 267.7 235 59.6
Psat0s3432g0080 Pisum sativum HOM05D005800 ORTHO05D007636 1.2e-68 265.0 215 61.4
TAR629G2547 Trochodendron aralioides HOM05D005800 ORTHO05D007636 2.1e-68 264.2 215 61.9
TAR629G1527 Trochodendron aralioides HOM05D005800 ORTHO05D007636 8.1e-65 252.3 306 49.3
MD17G1108300 Malus domestica HOM05D005800 ORTHO05D007636 1.8e-64 251.1 411 39.4
MBI15_g22711_MAGBIO Magnolia biondii HOM05D005800 ORTHO05D007636 5.7e-58 229.6 215 52.6
HPP92_015259 Vanilla planifolia HOM05D005800 ORTHO05D007636 9.6e-58 228.8 487 35.5
unitig_46.g18724 Utricularia gibba HOM05D005800 ORTHO05D007636 5.0e-54 216.5 212 54.7
Mapoly0007s0032 Marchantia polymorpha HOM05D005800 ORTHO05D007636 4.6e-44 183.3 231 44.6
Psat4g200480 Pisum sativum HOM05D005800 ORTHO05D007636 5.7e-42 176.4 238 41.2
HPP92_010007 Vanilla planifolia HOM05D005800 ORTHO05D007636 5.7e-42 176.4 177 53.7
Hma1.2p1_0445F.1_g154140 Hydrangea macrophylla HOM05D000101 ORTHO05D000089 2.7e-36 157.5 182 47.3
Lalb_Chr07g0194261 Lupinus albus HOM05D005800 ORTHO05D007636 4.7e-36 156.8 137 61.3
Psat4g200520 Pisum sativum HOM05D010125 ORTHO05D007636 1.1e-34 152.1 136 59.6
RcHm_v2.0_Chr2g0157711 Rosa chinensis HOM05D005800 ORTHO05D007636 4.1e-32 143.7 193 45.6
Psat4g200320 Pisum sativum HOM05D005800 ORTHO05D007636 2.2e-30 137.9 132 56.8
HanXRQChr14g0429271 Helianthus annuus HOM05D005800 ORTHO05D007636 1.4e-24 118.6 98 60.2
ATR1128G087 Amborella trichopoda HOM05D005800 ORTHO05D007636 4.2e-21 107.1 76 69.7
CBR_g34007 Chara braunii HOM05D005800 ORTHO05D007636 7.0e-16 89.7 103 44.7
COL.COLO4_04206 Corchorus olitorius HOM05D005800 ORTHO05D007636 8.0e-12 76.3 46 80.4
PRCOL_00005284 Prasinoderma coloniale HOM05D001546 ORTHO05D002908 1.8e-11 75.1 240 24.6
Pp3c17_14860 Physcomitrium patens HOM05D005800 ORTHO05D026664 5.2e-11 73.6 301 23.9
unitig_46.g18725 Utricularia gibba HOM05D005800 ORTHO05D007636 1.4e-08 65.5 49 65.3
COL.COLO4_04205 Corchorus olitorius HOM05D005800 ORTHO05D007636 3.1e-08 64.3 82 45.1


User provided reference genes

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