Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C019377.2 Cucumis melo HOM05D005832 ORTHO05D007117 1.5e-98 363.2 238 100.0
CsaV3_3G019700 Cucumis sativus L. HOM05D005832 ORTHO05D007117 7.2e-93 344.4 238 96.2
ClCG05G009090 Citrullus lanatus HOM05D005832 ORTHO05D007117 9.4e-93 344.0 238 95.8
Sed0026931 Sechium edule HOM05D005832 ORTHO05D007117 1.7e-73 280.0 241 85.5
Dinv29254 Davidia involucrata HOM05D005832 ORTHO05D007117 2.6e-66 256.1 238 79.8
Ciclev10021983m.g Citrus clementina HOM05D005832 ORTHO05D007117 1.7e-65 253.4 239 78.7
TWI39G1154 Tripterygium wilfordii HOM05D005832 ORTHO05D007117 4.1e-64 248.8 238 78.2
QL09p007826 Quercus lobata HOM05D005832 ORTHO05D007117 7.0e-64 248.1 237 79.3
Potri.012G018100 Populus trichocarpa HOM05D005832 ORTHO05D007117 9.2e-64 247.7 238 78.2
Prupe.2G314300 Prunus persica HOM05D005832 ORTHO05D007117 1.2e-63 247.3 234 79.1
MBI18_g01156_MAGBIO Magnolia biondii HOM05D005832 ORTHO05D007117 2.7e-63 246.1 238 79.0
CiPaw.06G044600 Carya illinoinensis HOM05D005832 ORTHO05D007117 1.3e-62 243.8 238 76.5
Cfa016207 Carpinus fangiana HOM05D005832 ORTHO05D007117 2.9e-62 242.7 238 78.6
Gohir.A09G185500 Gossypium hirsutum HOM05D005832 ORTHO05D007117 3.8e-62 242.3 238 78.2
Manes.01G039700 Manihot esculenta HOM05D005832 ORTHO05D007117 5.0e-62 241.9 243 77.0
MSTRG.8527 Avicennia marina HOM05D005832 ORTHO05D007117 1.5e-61 240.4 240 76.7
TAR375G0053 Trochodendron aralioides HOM05D005832 ORTHO05D007117 1.5e-61 240.4 254 74.0
Haze_00242 Corylus avellana HOM05D005832 ORTHO05D007117 1.9e-61 240.0 238 78.2
Haze_00239 Corylus avellana HOM05D005832 ORTHO05D007117 2.5e-61 239.6 238 78.2
Oeu010700.1 Olea europaea HOM05D005832 ORTHO05D007117 5.6e-61 238.4 241 77.2
Thecc.03G202400 Theobroma cacao HOM05D005832 ORTHO05D007117 5.6e-61 238.4 242 78.1
CAN.G481.39 Capsicum annuum HOM05D005832 ORTHO05D007117 2.8e-60 236.1 238 75.2
Sabra12G0014400 Salix brachista HOM05D005832 ORTHO05D007117 3.6e-60 235.7 222 80.6
Atru.chr12.2262 Acer truncatum HOM05D005832 ORTHO05D007117 6.1e-60 235.0 240 75.8
Actinidia06134 Actinidia chinensis HOM05D005832 ORTHO05D007117 1.0e-59 234.2 240 77.1
Nn3g18931 Nelumbo nucifera HOM05D005832 ORTHO05D007117 1.8e-59 233.4 238 77.3
PGR142G2159 Punica granatum HOM05D005832 ORTHO05D007117 3.1e-59 232.6 240 77.1
MD07G1294700 Malus domestica HOM05D005832 ORTHO05D007117 4.0e-59 232.3 235 77.4
Hma1.2p1_0591F.1_g185170 Hydrangea macrophylla HOM05D005832 ORTHO05D007117 6.8e-59 231.5 238 76.5
CDE09G0779 Ceratophyllum demersum HOM05D005832 ORTHO05D007117 8.9e-59 231.1 205 84.9
PGSC0003DMG400018522 Solanum tuberosum HOM05D005832 ORTHO05D007117 1.2e-58 230.7 238 74.4
GSVIVG01038586001 Vitis vinifera HOM05D005832 ORTHO05D007117 1.2e-58 230.7 238 76.5
Peaxi162Scf00740g00233 Petunia axillaris HOM05D005832 ORTHO05D007117 5.8e-58 228.4 239 75.3
SalBow2G0471 Salvia bowleyana HOM05D005832 ORTHO05D007117 1.3e-57 227.3 238 75.2
Sopen03g022710 Solanum pennellii HOM05D005832 ORTHO05D007117 1.7e-57 226.9 238 73.9
AUR62035562 Chenopodium quinoa HOM05D005832 ORTHO05D007117 2.2e-57 226.5 243 72.8
Nitab4.5_0007100g0060 Nicotiana tabacum HOM05D005832 ORTHO05D007117 2.2e-57 226.5 239 73.2
MD01G1223900 Malus domestica HOM05D005832 ORTHO05D007117 2.9e-57 226.1 231 76.6
Solyc03g082890.3 Solanum lycopersicum HOM05D005832 ORTHO05D007117 3.7e-57 225.7 238 73.5
Duzib084G1042 Durio zibethinus HOM05D005832 ORTHO05D007117 1.1e-56 224.2 242 75.6
Eucgr.K00402 Eucalyptus grandis HOM05D005832 ORTHO05D007117 1.1e-56 224.2 249 62.2
Gorai.006G202400 Gossypium raimondii HOM05D005832 ORTHO05D007117 3.2e-56 222.6 240 75.8
AUR62006065 Chenopodium quinoa HOM05D005832 ORTHO05D007117 9.2e-56 221.1 191 86.9
COL.COLO4_16805 Corchorus olitorius HOM05D005832 ORTHO05D007117 9.2e-56 221.1 193 87.6
Oeu055193.1 Olea europaea HOM05D005832 ORTHO05D007117 1.6e-55 220.3 262 57.3
HanXRQChr08g0225151 Helianthus annuus HOM05D005832 ORTHO05D007117 2.0e-55 219.9 241 74.3
Cc02_g01260 Coffea canephora HOM05D005832 ORTHO05D007117 2.7e-55 219.5 248 72.6
SGA_v2.0_scaffold125G33711 Striga asiatica HOM05D005832 ORTHO05D007117 2.7e-55 219.5 238 72.7
Gorai.008G019700 Gossypium raimondii HOM05D005832 ORTHO05D007117 3.5e-55 219.2 200 84.5
vmacro10134 Vaccinium macrocarpon HOM05D005832 ORTHO05D007117 3.5e-55 219.2 239 72.4
FvH4_7g32120 Fragaria vesca HOM05D005832 ORTHO05D007117 4.6e-55 218.8 238 74.8
FAN06G2446 Fragaria x ananassa HOM05D005832 ORTHO05D007117 4.6e-55 218.8 238 74.8
Gohir.D12G019400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 4.6e-55 218.8 199 84.9
Gorai.013G219100 Gossypium raimondii HOM05D005832 ORTHO05D007117 6.0e-55 218.4 258 50.4
FAN10G0265 Fragaria x ananassa HOM05D005832 ORTHO05D007117 7.8e-55 218.0 238 74.8
RcHm_v2.0_Chr1g0381721 Rosa chinensis HOM05D005832 ORTHO05D007117 7.8e-55 218.0 237 73.8
CANSAT21G0464 Cannabis sativa HOM05D005832 ORTHO05D007117 1.7e-54 216.9 240 72.9
arahy.Tifrunner.gnm1.ann1.26JPZN Arachis hypogaea HOM05D005832 ORTHO05D007117 2.3e-54 216.5 238 73.5
ATR0680G157 Amborella trichopoda HOM05D005832 ORTHO05D007117 3.9e-54 215.7 186 85.5
arahy.Tifrunner.gnm1.ann1.082NQD Arachis hypogaea HOM05D005832 ORTHO05D007117 3.9e-54 215.7 238 73.5
Psat5g075600 Pisum sativum HOM05D005832 ORTHO05D007117 3.9e-54 215.7 244 73.4
FAN10G0314 Fragaria x ananassa HOM05D005832 ORTHO05D007117 2.5e-53 213.0 241 73.9
Lj3A899T66 Lonicera japonica HOM05D005832 ORTHO05D007117 3.3e-53 212.6 159 69.2
Phvul.009G050400 Phaseolus vulgaris HOM05D005832 ORTHO05D007117 3.3e-53 212.6 242 72.7
Glyma.06G131300 Glycine max HOM05D005832 ORTHO05D007117 9.5e-53 211.1 242 73.6
Glyma.04G233500 Glycine max HOM05D005832 ORTHO05D007117 1.2e-52 210.7 242 72.3
Medtr3g491890 Medicago truncatula HOM05D005832 ORTHO05D007117 1.2e-52 210.7 244 72.5
Migut.F01014 Erythranthe guttata HOM05D005832 ORTHO05D007117 4.7e-52 208.8 159 67.3
Gorai.008G174000 Gossypium raimondii HOM05D005832 ORTHO05D007117 4.7e-52 208.8 238 73.1
Lj1g0002080 Lotus japonicus HOM05D005832 ORTHO05D007117 6.2e-52 208.4 238 72.7
Lsat_1_v5_gn_9_63281 Lactuca sativa HOM05D005832 ORTHO05D007117 8.0e-52 208.0 191 84.8
ECA233G1427 Erigeron canadensis HOM05D005832 ORTHO05D007117 1.1e-51 207.6 241 73.4
Gorai.007G219400 Gossypium raimondii HOM05D005832 ORTHO05D007117 1.4e-51 207.2 238 72.3
Zm00001eb220820 Zea mays HOM05D005832 ORTHO05D007117 1.4e-51 207.2 205 80.0
Os10g0502000 Oryza sativa ssp. japonica HOM05D005832 ORTHO05D007117 2.3e-51 206.5 206 79.1
Gorai.004G199200 Gossypium raimondii HOM05D005832 ORTHO05D007117 3.1e-51 206.1 200 66.0
unitig_578.g16672 Utricularia gibba HOM05D005832 ORTHO05D007117 3.1e-51 206.1 216 78.7
Aa31LG3G9660 Aethionema arabicum HOM05D005832 ORTHO05D007117 6.8e-51 204.9 241 68.5
HPP92_013004 Vanilla planifolia HOM05D005832 ORTHO05D007117 8.9e-51 204.5 211 76.8
VMungo1309G1177 Vigna mungo HOM05D005832 ORTHO05D007117 4.4e-50 202.2 242 70.2
PSO170G4678 Papaver somniferum HOM05D005832 ORTHO05D007117 7.5e-50 201.4 184 85.9
Ca_16726_v3 Cicer arietinum L. HOM05D005832 ORTHO05D007117 9.8e-50 201.1 246 71.1
Gohir.D07G112932 Gossypium hirsutum HOM05D005832 ORTHO05D007117 9.8e-50 201.1 258 48.4
Rhsim09G0206900 Rhododendron simsii HOM05D005832 ORTHO05D007117 1.7e-49 200.3 198 79.3
Lalb_Chr08g0240071 Lupinus albus HOM05D005832 ORTHO05D007117 2.2e-49 199.9 241 69.7
TPR.G33655 Trifolium pratense HOM05D005832 ORTHO05D007117 2.2e-49 199.9 197 81.2
Thhalv10014535m.g Eutrema salsugineum HOM05D005832 ORTHO05D007117 2.9e-49 199.5 241 67.2
Sc25g0000950 Simmondsia chinensis HOM05D005832 ORTHO05D007117 3.7e-49 199.1 210 77.6
PSO063G3297 Papaver somniferum HOM05D005832 ORTHO05D007117 4.9e-49 198.7 184 85.3
Sp6g15630 Schrenkiella parvula HOM05D005832 ORTHO05D007117 4.9e-49 198.7 242 66.5
CARHR266630 Cardamine hirsuta HOM05D005832 ORTHO05D007117 1.1e-48 197.6 241 68.0
EL10Ac3g05248 Beta vulgaris HOM05D005832 ORTHO05D007117 9.2e-48 194.5 238 60.1
SEGI_24850 Sequoiadendron giganteum HOM05D005832 ORTHO05D007117 2.1e-47 193.4 188 81.4
DCAR_020339 Daucus carota HOM05D005832 ORTHO05D007117 1.0e-46 191.0 200 78.5
AT5G53490 Arabidopsis thaliana HOM05D005832 ORTHO05D007117 1.3e-46 190.7 241 66.8
Gohir.A10G001400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 5.1e-46 188.7 141 70.2
BcaB08g35713 Brassica carinata HOM05D005832 ORTHO05D007117 6.6e-46 188.3 241 67.2
Gohir.A05G409400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 8.6e-46 188.0 141 70.2
Gohir.D01G203700 Gossypium hirsutum HOM05D005832 ORTHO05D007117 8.6e-46 188.0 141 70.2
CSS0000669 Camellia sinensis var. sinensis HOM05D005832 ORTHO05D007117 1.1e-45 187.6 212 52.4
CSS0046458 Camellia sinensis var. sinensis HOM05D005832 ORTHO05D007117 1.1e-45 187.6 212 52.4
Gohir.D09G180400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 1.1e-45 187.6 238 70.2
BcaC04g20449 Brassica carinata HOM05D005832 ORTHO05D007117 5.6e-45 185.3 207 73.4
C09p43330 Brassica napus HOM05D005832 ORTHO05D007117 5.6e-45 185.3 207 73.4
BolC9t57215H Brassica oleracea HOM05D005832 ORTHO05D007117 5.6e-45 185.3 207 73.4
Gohir.D02G154600 Gossypium hirsutum HOM05D005832 ORTHO05D007117 5.6e-45 185.3 141 68.8
Gohir.A13G227280 Gossypium hirsutum HOM05D005832 ORTHO05D007117 1.6e-44 183.7 141 68.8
A10p10930 Brassica napus HOM05D005832 ORTHO05D007117 2.1e-44 183.3 237 67.1
THA.LOC104799961 Tarenaya hassleriana HOM05D005832 ORTHO05D007117 4.7e-44 182.2 241 65.6
Carub.0008s1366 Capsella rubella HOM05D005832 ORTHO05D007117 6.2e-44 181.8 241 66.0
Gohir.D03G118200 Gossypium hirsutum HOM05D005832 ORTHO05D007117 8.1e-44 181.4 139 66.2
Gohir.D11G247000 Gossypium hirsutum HOM05D005832 ORTHO05D007117 8.1e-44 181.4 143 66.4
BraA10t43184Z Brassica rapa HOM05D005832 ORTHO05D007117 3.1e-43 179.5 186 79.0
Ah.13g070460 Amaranthus hybridus HOM05D005832 ORTHO05D007117 2.0e-42 176.8 105 81.0
Gohir.A11G163501 Gossypium hirsutum HOM05D005832 ORTHO05D007117 5.8e-42 175.3 238 49.6
Pp3c23_22190 Physcomitrium patens HOM05D005832 ORTHO05D007117 1.3e-41 174.1 209 68.9
Aqoxy6G02259 Aquilegia oxysepala HOM05D005832 ORTHO05D007117 4.1e-40 169.1 184 77.2
Gohir.D12G161000 Gossypium hirsutum HOM05D005832 ORTHO05D007117 1.6e-39 167.2 238 49.2
FAN01G1435 Fragaria x ananassa HOM05D005832 ORTHO05D007117 1.3e-38 164.1 157 89.2
FAN03G0720 Fragaria x ananassa HOM05D005832 ORTHO05D007117 1.3e-38 164.1 158 87.3
AL8G28210 Arabidopsis lyrata HOM05D005832 ORTHO05D007117 6.6e-38 161.8 165 83.6
Duzib205G0233 Durio zibethinus HOM05D005832 ORTHO05D007117 1.9e-37 160.2 243 65.0
Mapoly0014s0126 Marchantia polymorpha HOM05D005832 ORTHO05D007117 4.4e-34 149.1 207 61.8
SMO111G0094 Selaginella moellendorffii HOM05D005832 ORTHO05D007117 1.3e-33 147.5 156 81.4
Gorai.004G257600 Gossypium raimondii HOM05D005832 ORTHO05D007117 1.1e-32 144.4 77 89.6
CBR_g40818 Chara braunii HOM05D005832 ORTHO05D007117 3.5e-31 139.4 120 60.0
AagrBONN_evm.TU.Sc2ySwM_228.2510 Anthoceros agrestis HOM05D005832 ORTHO05D007117 6.0e-31 138.7 105 63.8
SEGI_05976 Sequoiadendron giganteum HOM05D005832 ORTHO05D007117 3.6e-20 102.8 64 73.4
Cpa.g.sc3.109 Carica papaya HOM05D005832 ORTHO05D007117 1.5e-13 80.9 81 50.6
Cre09.g404000 Chlamydomonas reinhardtii HOM05D005832 ORTHO05D007117 4.3e-13 79.3 181 41.4
Actinidia18663 Actinidia chinensis HOM05D005832 ORTHO05D007117 2.8e-12 76.6 116 77.6


User provided reference genes

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