Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C018365.2 Cucumis melo HOM05D004762 ORTHO05D005972 4.3e-231 804.3 399 100.0
CsaV3_5G010300 Cucumis sativus L. HOM05D004762 ORTHO05D005972 8.9e-213 743.4 382 96.1
ClCG07G004360 Citrullus lanatus HOM05D004762 ORTHO05D005972 2.0e-204 715.7 415 86.5
Sed0015827 Sechium edule HOM05D004762 ORTHO05D005972 9.9e-204 713.4 382 90.1
QL06p052059 Quercus lobata HOM05D004762 ORTHO05D005972 5.3e-181 637.9 384 80.5
Hma1.2p1_0145F.1_g065350 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 6.9e-181 637.5 382 80.9
Ciclev10031450m.g Citrus clementina HOM05D004762 ORTHO05D005972 7.1e-178 627.5 378 79.6
TAR636G3670 Trochodendron aralioides HOM05D004762 ORTHO05D005972 2.7e-177 625.5 382 78.5
GSVIVG01032791001 Vitis vinifera HOM05D004762 ORTHO05D005972 3.5e-177 625.2 383 78.6
CANSAT56G2662 Cannabis sativa HOM05D004762 ORTHO05D005972 4.6e-177 624.8 382 79.1
Duzib106G1587 Durio zibethinus HOM05D004762 ORTHO05D005972 1.3e-176 623.2 382 80.1
CSS0039953 Camellia sinensis var. sinensis HOM05D004762 ORTHO05D005972 6.7e-176 620.9 383 78.9
CSS0044129 Camellia sinensis var. sinensis HOM05D004762 ORTHO05D005972 6.7e-176 620.9 383 78.9
Manes.07G131500 Manihot esculenta HOM05D004762 ORTHO05D005972 1.1e-175 620.2 378 78.3
CiPaw.01G300200 Carya illinoinensis HOM05D004762 ORTHO05D005972 1.9e-175 619.4 382 78.3
FvH4_7g24680 Fragaria vesca HOM05D004762 ORTHO05D005972 2.5e-175 619.0 381 79.0
RcHm_v2.0_Chr1g0370541 Rosa chinensis HOM05D004762 ORTHO05D005972 2.5e-175 619.0 382 79.8
Gorai.013G017200 Gossypium raimondii HOM05D004762 ORTHO05D005972 9.6e-175 617.1 382 79.3
TWI09G1175 Tripterygium wilfordii HOM05D004762 ORTHO05D005972 2.8e-174 615.5 382 78.0
Psat4g160680 Pisum sativum HOM05D004762 ORTHO05D005972 3.7e-174 615.1 379 77.8
Atru.BG.273.p Acer truncatum HOM05D004762 ORTHO05D005972 4.8e-174 614.8 348 84.5
Cfa001301 Carpinus fangiana HOM05D004762 ORTHO05D005972 6.2e-174 614.4 382 78.5
Medtr8g027750 Medicago truncatula HOM05D004762 ORTHO05D005972 6.2e-174 614.4 371 78.7
Rhsim03G0145100 Rhododendron simsii HOM05D004762 ORTHO05D005972 1.1e-173 613.6 383 76.5
Potri.012G095500 Populus trichocarpa HOM05D004762 ORTHO05D005972 1.8e-173 612.8 379 77.8
FAN10G2322 Fragaria x ananassa HOM05D004762 ORTHO05D005972 2.4e-173 612.5 381 78.2
Gohir.A13G014500 Gossypium hirsutum HOM05D004762 ORTHO05D005972 2.4e-173 612.5 382 78.5
Haze_17244 Corylus avellana HOM05D004762 ORTHO05D005972 5.3e-173 611.3 391 77.2
TWI53G2041 Tripterygium wilfordii HOM05D004762 ORTHO05D005972 6.9e-173 610.9 382 77.7
Gohir.D13G015700 Gossypium hirsutum HOM05D004762 ORTHO05D005972 9.0e-173 610.5 382 79.3
Thhalv10016619m.g Eutrema salsugineum HOM05D004762 ORTHO05D005972 1.5e-172 609.8 382 76.4
COL.COLO4_25767 Corchorus olitorius HOM05D004762 ORTHO05D005972 2.6e-172 609.0 382 77.5
Thecc.10G014000 Theobroma cacao HOM05D004762 ORTHO05D005972 2.6e-172 609.0 378 78.8
MD01G1154800 Malus domestica HOM05D004762 ORTHO05D005972 3.4e-172 608.6 382 78.5
COL.COLO4_23625 Corchorus olitorius HOM05D004762 ORTHO05D005972 4.5e-172 608.2 382 77.2
Peaxi162Scf00284g00722 Petunia axillaris HOM05D004762 ORTHO05D005972 1.7e-171 606.3 372 78.2
Migut.F00664 Erythranthe guttata HOM05D004762 ORTHO05D005972 5.0e-171 604.7 371 78.4
FAN06G2944 Fragaria x ananassa HOM05D004762 ORTHO05D005972 5.0e-171 604.7 410 73.7
MD07G1223900 Malus domestica HOM05D004762 ORTHO05D005972 6.5e-171 604.4 382 78.8
Nitab4.5_0000797g0010 Nicotiana tabacum HOM05D004762 ORTHO05D005972 2.5e-170 602.4 372 78.2
Aqoxy7G00585 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 5.5e-170 601.3 378 75.1
Nn1g09364 Nelumbo nucifera HOM05D004762 ORTHO05D005972 9.3e-170 600.5 363 78.2
Sp4g22540 Schrenkiella parvula HOM05D004762 ORTHO05D005972 9.3e-170 600.5 382 75.1
PGSC0003DMG400019183 Solanum tuberosum HOM05D004762 ORTHO05D005972 9.3e-170 600.5 372 78.0
CAN.G1087.1 Capsicum annuum HOM05D004762 ORTHO05D005972 1.2e-169 600.1 376 76.9
Eucgr.G03076 Eucalyptus grandis HOM05D004762 ORTHO05D005972 1.6e-169 599.7 383 75.7
Lalb_Chr04g0254441 Lupinus albus HOM05D004762 ORTHO05D005972 1.6e-169 599.7 373 76.7
Prupe.2G252400 Prunus persica HOM05D004762 ORTHO05D005972 1.6e-169 599.7 382 77.7
Ca_23540_v3 Cicer arietinum L. HOM05D004762 ORTHO05D005972 2.1e-169 599.4 393 74.3
FAN03G0495 Fragaria x ananassa HOM05D004762 ORTHO05D005972 2.1e-169 599.4 411 73.2
Solyc10g076800.2 Solanum lycopersicum HOM05D004762 ORTHO05D005972 2.1e-169 599.4 372 77.7
VMungo0331G1989 Vigna mungo HOM05D004762 ORTHO05D005972 2.1e-169 599.4 378 76.7
A05p06240 Brassica napus HOM05D004762 ORTHO05D005972 3.5e-169 598.6 382 75.4
Glyma.07G056300 Glycine max HOM05D004762 ORTHO05D005972 3.5e-169 598.6 378 75.9
AUR62012271 Chenopodium quinoa HOM05D004762 ORTHO05D005972 4.6e-169 598.2 377 74.8
Nitab4.5_0013304g0010 Nicotiana tabacum HOM05D004762 ORTHO05D005972 4.6e-169 598.2 384 76.6
AT2G40190 Arabidopsis thaliana HOM05D004762 ORTHO05D005972 6.1e-169 597.8 382 74.6
PSO675G7276 Papaver somniferum HOM05D004762 ORTHO05D005972 6.1e-169 597.8 377 75.6
Phvul.010G113600 Phaseolus vulgaris HOM05D004762 ORTHO05D005972 6.1e-169 597.8 378 76.7
SalBow6G6782 Salvia bowleyana HOM05D004762 ORTHO05D005972 7.9e-169 597.4 371 78.2
BraA05t19588Z Brassica rapa HOM05D004762 ORTHO05D005972 1.3e-168 596.7 382 75.1
Lj3g0010190 Lotus japonicus HOM05D004762 ORTHO05D005972 1.8e-168 596.3 379 76.5
PSO478G3676 Papaver somniferum HOM05D004762 ORTHO05D005972 3.9e-168 595.1 382 74.9
EL10Ac2g04854 Beta vulgaris HOM05D004762 ORTHO05D005972 6.7e-168 594.3 378 74.6
AL108U10020 Arabidopsis lyrata HOM05D004762 ORTHO05D005972 8.7e-168 594.0 382 74.6
Glyma.16G025200 Glycine max HOM05D004762 ORTHO05D005972 8.7e-168 594.0 370 77.0
BcaC02g12138 Brassica carinata HOM05D004762 ORTHO05D005972 1.9e-167 592.8 382 74.6
PSO017G1441 Papaver somniferum HOM05D004762 ORTHO05D005972 1.9e-167 592.8 382 74.1
arahy.Tifrunner.gnm1.ann1.BGVI4S Arachis hypogaea HOM05D004762 ORTHO05D005972 2.5e-167 592.4 374 77.8
FAN01G2296 Fragaria x ananassa HOM05D004762 ORTHO05D005972 3.3e-167 592.0 427 70.3
C04p07190 Brassica napus HOM05D004762 ORTHO05D005972 5.7e-167 591.3 377 74.8
Cc08_g07190 Coffea canephora HOM05D004762 ORTHO05D005972 9.7e-167 590.5 386 74.9
vmacro06958 Vaccinium macrocarpon HOM05D004762 ORTHO05D005972 9.7e-167 590.5 415 71.3
Aa31LG5G19380 Aethionema arabicum HOM05D004762 ORTHO05D005972 2.8e-166 589.0 386 73.8
BcaB02g09041 Brassica carinata HOM05D004762 ORTHO05D005972 4.8e-166 588.2 354 78.2
Sc10g0002460 Simmondsia chinensis HOM05D004762 ORTHO05D005972 4.8e-166 588.2 382 74.1
Carub.0004s2241 Capsella rubella HOM05D004762 ORTHO05D005972 6.3e-166 587.8 377 74.3
SGA_v2.0_scaffold44G16679 Striga asiatica HOM05D004762 ORTHO05D005972 8.2e-166 587.4 386 74.9
BolC4t22343H Brassica oleracea HOM05D004762 ORTHO05D005972 1.4e-165 586.6 378 74.6
CAN.G1305.22 Capsicum annuum HOM05D004762 ORTHO05D005972 1.5e-164 583.2 373 75.9
arahy.Tifrunner.gnm1.ann1.YY9F0M Arachis hypogaea HOM05D004762 ORTHO05D005972 2.6e-164 582.4 396 73.0
HanXRQChr14g0459541 Helianthus annuus HOM05D004762 ORTHO05D005972 4.5e-164 581.6 372 75.0
arahy.Tifrunner.gnm1.ann1.NBD53L Arachis hypogaea HOM05D004762 ORTHO05D005972 1.0e-163 580.5 387 74.4
PSO017G5956 Papaver somniferum HOM05D004762 ORTHO05D005972 1.0e-163 580.5 400 70.5
Hma1.2p1_0523F.1_g172170 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 1.9e-162 576.2 378 76.2
AL4G37920 Arabidopsis lyrata HOM05D004762 ORTHO05D005972 3.9e-160 568.5 382 72.5
DCAR_007786 Daucus carota HOM05D004762 ORTHO05D005972 2.5e-159 565.8 378 72.0
Lj8A64T49 Lonicera japonica HOM05D004762 ORTHO05D005972 3.3e-159 565.5 385 72.2
PGR142G3177 Punica granatum HOM05D004762 ORTHO05D005972 3.3e-159 565.5 382 72.0
Oeu043882.1 Olea europaea HOM05D004762 ORTHO05D005972 2.8e-158 562.4 419 66.3
ECA238G4598 Erigeron canadensis HOM05D001399 ORTHO05D001670 1.5e-156 556.6 347 77.8
Oeu011273.2 Olea europaea HOM05D004762 ORTHO05D005972 7.7e-156 554.3 454 62.1
Sabra15G0114600 Salix brachista HOM05D004762 ORTHO05D005972 1.0e-155 553.9 520 57.1
Lsat_1_v5_gn_2_124101 Lactuca sativa HOM05D004762 ORTHO05D005972 3.8e-155 552.0 372 72.8
ATR0580G181 Amborella trichopoda HOM05D004762 ORTHO05D005972 1.4e-154 550.1 379 71.2
CDE02G4330 Ceratophyllum demersum HOM05D004762 ORTHO05D005972 4.2e-154 548.5 383 67.6
Zm00001eb030250 Zea mays HOM05D004762 ORTHO05D005972 3.6e-153 545.4 372 69.6
Actinidia33916 Actinidia chinensis HOM05D004762 ORTHO05D005972 2.6e-151 539.3 389 70.2
HPP92_020134 Vanilla planifolia HOM05D004762 ORTHO05D005972 9.7e-151 537.3 347 72.6
DCAR_024818 Daucus carota HOM05D004762 ORTHO05D005972 2.2e-139 499.6 375 63.2
BcaC02g12136 Brassica carinata HOM05D004762 ORTHO05D005972 1.8e-136 490.0 380 66.6
Hma1.2p1_2705F.1_g327160 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 3.4e-135 485.7 283 84.1
AUR62022908 Chenopodium quinoa HOM05D004762 ORTHO05D005972 5.7e-135 485.0 299 77.3
Dinv21748 Davidia involucrata HOM05D004762 ORTHO05D005972 3.7e-134 482.3 281 79.7
TPR.G15355 Trifolium pratense HOM05D004762 ORTHO05D005972 1.0e-131 474.2 282 80.9
Mapoly0096s0017 Marchantia polymorpha HOM05D004762 ORTHO05D005972 1.1e-130 470.7 374 62.8
Pp3c14_26870 Physcomitrium patens HOM05D004762 ORTHO05D005972 1.0e-123 447.6 370 59.5
Sopen10g028440 Solanum pennellii HOM05D004762 ORTHO05D005972 2.3e-123 446.4 271 77.1
CARHR135230 Cardamine hirsuta HOM05D004762 ORTHO05D005972 1.5e-122 443.7 282 74.1
AagrBONN_evm.TU.Sc2ySwM_228.3247 Anthoceros agrestis HOM05D004762 ORTHO05D005972 1.8e-120 436.8 361 60.1
SGA_v2.0_scaffold60G20982 Striga asiatica HOM05D004762 ORTHO05D005972 5.2e-120 435.3 350 63.1
SMO358G0322 Selaginella moellendorffii HOM05D004762 ORTHO05D005972 3.2e-117 426.0 353 62.3
unitig_748.g8448 Utricularia gibba HOM05D004762 ORTHO05D005972 1.7e-115 420.2 372 57.3
PSO017G2836 Papaver somniferum HOM05D004762 ORTHO05D005972 1.6e-108 397.1 253 71.1
CBR_g12682 Chara braunii HOM05D004762 ORTHO05D005972 8.6e-107 391.3 367 55.9
Hund15913 Selenicereus undatus HOM05D004762 ORTHO05D005972 4.1e-93 345.9 379 51.2
MCO10G125 Micromonas commoda HOM05D004762 ORTHO05D005972 1.8e-88 330.5 427 44.5
Cre01.g058521 Chlamydomonas reinhardtii HOM05D004762 ORTHO05D005972 3.4e-79 299.7 384 44.5
PRCOL_00001728 Prasinoderma coloniale HOM05D004762 ORTHO05D005972 1.3e-78 297.7 360 44.2
Haze_26859 Corylus avellana HOM05D004762 ORTHO05D005972 1.5e-71 274.2 381 40.4
Cpa.g.sc1441.3 Carica papaya HOM05D004762 ORTHO05D005972 5.8e-71 272.3 161 77.0
Os12g0583000 Oryza sativa ssp. japonica HOM05D004762 ORTHO05D005972 1.4e-69 267.7 177 72.9
Gohir.D08G135600 Gossypium hirsutum HOM05D004762 ORTHO05D005972 1.4e-64 251.1 168 76.8
Gorai.004G138800 Gossypium raimondii HOM05D004762 ORTHO05D005972 9.0e-64 248.4 175 73.7
Aqoxy4G02491 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 5.8e-63 245.7 184 66.3
Gohir.D06G056233 Gossypium hirsutum HOM05D004762 ORTHO05D005972 1.8e-59 234.2 173 72.3
Aqoxy4G02490 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 2.3e-59 233.8 157 71.3
BcaB01g03555 Brassica carinata HOM05D004762 ORTHO05D005972 6.7e-43 179.1 123 73.2
Phvul.010G113266 Phaseolus vulgaris HOM05D004762 ORTHO05D005972 9.7e-42 175.3 121 67.8
BraA04t18511Z Brassica rapa HOM05D004762 ORTHO05D001193 6.3e-41 172.6 160 57.5
Hma1.2p1_0812F.1_g222370 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 5.5e-37 159.5 339 33.6
TPR.G10834 Trifolium pratense HOM05D004762 ORTHO05D005972 1.4e-32 144.8 100 67.0
TAR633G0702 Trochodendron aralioides HOM05D003030 ORTHO05D003610 2.6e-31 140.6 94 78.7
Nitab4.5_0001180g0090 Nicotiana tabacum HOM05D004762 ORTHO05D005972 1.0e-30 138.7 91 68.1
Potri.015G093000 Populus trichocarpa HOM05D004762 ORTHO05D005972 1.0e-30 138.7 93 72.0
A04p29970 Brassica napus HOM05D004762 ORTHO05D001193 8.2e-25 119.0 160 45.6
arahy.Tifrunner.gnm1.ann1.38D1EG Arachis hypogaea HOM05D005637 ORTHO05D006983 4.4e-18 96.7 66 72.7
arahy.Tifrunner.gnm1.ann1.SGI312 Arachis hypogaea HOM05D004762 ORTHO05D005972 2.2e-17 94.4 68 70.6
SEGI_02041 Sequoiadendron giganteum HOM05D004762 ORTHO05D005972 6.3e-17 92.8 98 52.0
QL11p009420 Quercus lobata HOM05D004762 ORTHO05D005972 2.1e-12 77.8 39 97.4
MD13G1267900 Malus domestica HOM05D004762 ORTHO05D005972 1.4e-11 75.1 40 87.5
Sed0021837 Sechium edule HOM05D004762 ORTHO05D005972 2.3e-11 74.3 43 83.7
EL10Ac6g13956 Beta vulgaris HOM05D004762 ORTHO05D005972 8.8e-11 72.4 39 89.7
Nitab4.5_0006049g0030 Nicotiana tabacum HOM05D004762 ORTHO05D005972 9.8e-10 68.9 36 94.4
Aqoxy4G02489 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 1.7e-09 68.2 39 84.6
MD02G1220900 Malus domestica HOM05D004762 ORTHO05D005972 2.8e-09 67.4 38 76.3
SEGI_20752 Sequoiadendron giganteum HOM05D004762 ORTHO05D005972 8.3e-09 65.9 39 76.9
EL10Ac2g03328 Beta vulgaris HOM05D004762 ORTHO05D005972 3.1e-08 63.9 39 84.6
GSVIVG01022727001 Vitis vinifera HOM05D004762 ORTHO05D005972 4.1e-08 63.5 51 60.8
Lsat_1_v5_gn_3_79340 Lactuca sativa HOM05D004762 ORTHO05D231769 1.6e-07 61.6 67 53.7
SMO200G0224 Selaginella moellendorffii HOM05D004141 ORTHO05D005416 1.0e-06 58.9 236 25.4


User provided reference genes

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