Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C018081.2 Cucumis melo HOM05D005148 ORTHO05D006218 7.3e-145 517.7 367 100.0
CsaV3_3G023250 Cucumis sativus L. HOM05D005148 ORTHO05D006218 8.6e-61 238.4 269 71.4
ClCG05G014480 Citrullus lanatus HOM05D005148 ORTHO05D006218 4.7e-51 206.1 272 72.4
Sed0006852 Sechium edule HOM05D005148 ORTHO05D006218 6.6e-45 185.7 279 56.3
Nitab4.5_0005048g0010 Nicotiana tabacum HOM05D005148 ORTHO05D006218 1.2e-33 148.3 117 67.5
Gohir.A13G139300 Gossypium hirsutum HOM05D005148 ORTHO05D006218 2.9e-32 143.7 93 78.5
Gorai.013G161200 Gossypium raimondii HOM05D005148 ORTHO05D006218 4.9e-32 142.9 93 78.5
Gohir.D13G144100 Gossypium hirsutum HOM05D005148 ORTHO05D006218 5.4e-31 139.4 93 77.4
CAN.G1781.10 Capsicum annuum HOM05D005148 ORTHO05D006218 9.2e-31 138.7 83 81.9
Thecc.07G044600 Theobroma cacao HOM05D005148 ORTHO05D006218 9.2e-31 138.7 204 50.5
Duzib268G1307 Durio zibethinus HOM05D005148 ORTHO05D006218 1.6e-30 137.9 98 74.5
Migut.H01845 Erythranthe guttata HOM05D005148 ORTHO05D006218 2.1e-30 137.5 202 49.0
Sc03g0008800 Simmondsia chinensis HOM05D005148 ORTHO05D006218 2.1e-30 137.5 91 75.8
CSS0036538 Camellia sinensis var. sinensis HOM05D005148 ORTHO05D006218 2.7e-30 137.1 80 85.0
Nitab4.5_0001393g0210 Nicotiana tabacum HOM05D005148 ORTHO05D006218 2.7e-30 137.1 80 85.0
Duzib213G0030 Durio zibethinus HOM05D005148 ORTHO05D006218 6.0e-30 136.0 205 44.9
Hma1.2p1_0938F.1_g239180 Hydrangea macrophylla HOM05D005148 ORTHO05D006218 6.0e-30 136.0 80 86.2
PGSC0003DMG400014426 Solanum tuberosum HOM05D005148 ORTHO05D006218 6.0e-30 136.0 208 42.8
SGA_v2.0_scaffold115G32129 Striga asiatica HOM05D005148 ORTHO05D006218 7.8e-30 135.6 93 73.1
Prupe.4G208000 Prunus persica HOM05D005148 ORTHO05D006218 1.3e-29 134.8 80 83.8
Nn1g07082 Nelumbo nucifera HOM05D005148 ORTHO05D006218 1.7e-29 134.4 81 85.2
PGR042G3618 Punica granatum HOM05D005148 ORTHO05D006218 2.3e-29 134.0 80 83.8
Sopen10g002340 Solanum pennellii HOM05D005148 ORTHO05D006218 2.3e-29 134.0 208 42.8
TAR626G1940 Trochodendron aralioides HOM05D005148 ORTHO05D006218 2.3e-29 134.0 75 88.0
Cpa.g.sc97.43 Carica papaya HOM05D005148 ORTHO05D006218 3.0e-29 133.7 83 81.9
Lalb_Chr20g0114191 Lupinus albus HOM05D005148 ORTHO05D006218 3.9e-29 133.3 93 72.0
Dinv22285 Davidia involucrata HOM05D005148 ORTHO05D006218 5.1e-29 132.9 198 43.9
Eucgr.F00968 Eucalyptus grandis HOM05D005148 ORTHO05D006218 5.1e-29 132.9 111 63.1
Nn1g03595 Nelumbo nucifera HOM05D005148 ORTHO05D006218 5.1e-29 132.9 81 81.5
Dinv40732 Davidia involucrata HOM05D005148 ORTHO05D006218 6.6e-29 132.5 80 82.5
Glyma.09G101200 Glycine max HOM05D005148 ORTHO05D006218 6.6e-29 132.5 80 78.8
HanXRQChr08g0235221 Helianthus annuus HOM05D005148 ORTHO05D006218 8.7e-29 132.1 83 78.3
Atru.chr2.3744 Acer truncatum HOM05D005148 ORTHO05D006218 1.1e-28 131.7 74 87.8
Atru.chr2.3757 Acer truncatum HOM05D005148 ORTHO05D006218 1.1e-28 131.7 74 87.8
QL03p062207 Quercus lobata HOM05D005148 ORTHO05D006218 1.1e-28 131.7 80 80.0
QL03p062820 Quercus lobata HOM05D005148 ORTHO05D006218 1.1e-28 131.7 80 80.0
Rhsim04G0001600 Rhododendron simsii HOM05D005148 ORTHO05D006218 1.9e-28 131.0 82 78.0
CiPaw.11G186500 Carya illinoinensis HOM05D005148 ORTHO05D006218 2.5e-28 130.6 80 81.2
Medtr3g049440 Medicago truncatula HOM05D005148 ORTHO05D006218 2.5e-28 130.6 83 75.9
Solyc10g006390.3 Solanum lycopersicum HOM05D005148 ORTHO05D006218 2.5e-28 130.6 208 41.8
ECA246G0930 Erigeron canadensis HOM05D005148 ORTHO05D006218 3.3e-28 130.2 83 74.7
QL06p002269 Quercus lobata HOM05D005148 ORTHO05D006218 3.3e-28 130.2 78 80.8
TWI38G1498 Tripterygium wilfordii HOM05D005148 ORTHO05D006218 3.3e-28 130.2 83 79.5
Ca_14709_v3 Cicer arietinum L. HOM05D005148 ORTHO05D006218 4.3e-28 129.8 80 80.0
CANSAT54G0232 Cannabis sativa HOM05D005148 ORTHO05D006218 5.6e-28 129.4 78 82.1
Psat5g183400 Pisum sativum HOM05D005148 ORTHO05D006218 5.6e-28 129.4 80 78.8
COL.COLO4_09623 Corchorus olitorius HOM05D005148 ORTHO05D006218 7.3e-28 129.0 80 78.8
Aqoxy1G03309 Aquilegia oxysepala HOM05D005148 ORTHO05D006218 9.6e-28 128.6 80 77.5
Aqoxy3G00120 Aquilegia oxysepala HOM05D005148 ORTHO05D006218 9.6e-28 128.6 80 77.5
Glyma.18G102900 Glycine max HOM05D005148 ORTHO05D006218 9.6e-28 128.6 80 77.5
Atru.chr2.3269 Acer truncatum HOM05D005148 ORTHO05D006218 1.6e-27 127.9 71 87.3
GSVIVG01030604001 Vitis vinifera HOM05D005148 ORTHO05D006218 1.6e-27 127.9 83 77.1
MSTRG.12962 Avicennia marina HOM05D005148 ORTHO05D006218 2.1e-27 127.5 81 79.0
Potri.001G420400 Populus trichocarpa HOM05D005148 ORTHO05D006218 2.1e-27 127.5 87 74.7
Ciclev10008061m.g Citrus clementina HOM05D005148 ORTHO05D006218 2.8e-27 127.1 79 81.0
Rhsim04G0000500 Rhododendron simsii HOM05D005148 ORTHO05D006218 2.8e-27 127.1 83 75.9
arahy.Tifrunner.gnm1.ann1.ICWX02 Arachis hypogaea HOM05D005148 ORTHO05D006218 3.6e-27 126.7 80 76.2
arahy.Tifrunner.gnm1.ann1.XKJ78D Arachis hypogaea HOM05D005148 ORTHO05D006218 3.6e-27 126.7 80 76.2
vmacro09737 Vaccinium macrocarpon HOM05D005148 ORTHO05D006218 3.6e-27 126.7 89 73.0
VMungo0540G1829 Vigna mungo HOM05D005148 ORTHO05D006218 3.6e-27 126.7 80 76.2
Haze_06035 Corylus avellana HOM05D001748 ORTHO05D006218 4.7e-27 126.3 80 77.5
Haze_09643 Corylus avellana HOM05D005148 ORTHO05D006218 4.7e-27 126.3 80 77.5
QL08p012200 Quercus lobata HOM05D005148 ORTHO05D006218 4.7e-27 126.3 72 83.3
unitig_22.g5751 Utricularia gibba HOM05D005148 ORTHO05D006218 4.7e-27 126.3 83 74.7
Cfa020393 Carpinus fangiana HOM05D001748 ORTHO05D001759 6.2e-27 125.9 80 77.5
Cc05_g13470 Coffea canephora HOM05D005148 ORTHO05D006218 6.2e-27 125.9 80 76.2
Lsat_1_v5_gn_5_13800 Lactuca sativa HOM05D005148 ORTHO05D006218 6.2e-27 125.9 84 73.8
Manes.03G127500 Manihot esculenta HOM05D005148 ORTHO05D006218 1.1e-26 125.2 83 79.5
MD03G1208700 Malus domestica HOM05D005148 ORTHO05D006218 1.8e-26 124.4 89 70.8
Lj6g0026690 Lotus japonicus HOM05D005148 ORTHO05D006218 3.1e-26 123.6 80 77.5
Ah.04g165650 Amaranthus hybridus HOM05D001748 ORTHO05D001759 1.5e-25 121.3 71 81.7
ATR0752G127 Amborella trichopoda HOM05D005148 ORTHO05D006218 2.0e-25 120.9 79 74.7
Phvul.006G037500 Phaseolus vulgaris HOM05D005148 ORTHO05D006218 2.6e-25 120.6 80 75.0
HPP92_019925 Vanilla planifolia HOM05D005148 ORTHO05D006218 4.4e-25 119.8 75 81.3
MD11G1223400 Malus domestica HOM05D005148 ORTHO05D006218 5.8e-25 119.4 89 68.5
AUR62008441 Chenopodium quinoa HOM05D005148 ORTHO05D006218 7.6e-25 119.0 79 77.2
AUR62021649 Chenopodium quinoa HOM05D005148 ORTHO05D006218 7.6e-25 119.0 79 77.2
Medtr5g081620 Medicago truncatula HOM05D005148 ORTHO05D006218 4.9e-24 116.3 64 85.9
TPR.G13552 Trifolium pratense HOM05D005148 ORTHO05D006218 4.9e-24 116.3 64 85.9
Manes.15G074502 Manihot esculenta HOM05D005148 ORTHO05D006218 8.4e-24 115.5 72 80.6
EL10Ac4g07904 Beta vulgaris HOM05D005148 ORTHO05D006218 1.4e-23 114.8 79 74.7
FAN16G3277 Fragaria x ananassa HOM05D005148 ORTHO05D006218 1.4e-23 114.8 79 73.4
CDE05G0897 Ceratophyllum demersum HOM05D005148 ORTHO05D006218 2.4e-23 114.0 78 73.1
BcaB04g19113 Brassica carinata HOM05D005148 ORTHO05D006218 3.2e-23 113.6 84 69.0
FAN21G2996 Fragaria x ananassa HOM05D005148 ORTHO05D006218 3.2e-23 113.6 79 72.2
FvH4_3g22101 Fragaria vesca HOM05D005148 ORTHO05D006218 4.2e-23 113.2 79 72.2
Potri.011G136102 Populus trichocarpa HOM05D005148 ORTHO05D006218 4.2e-23 113.2 76 77.6
RcHm_v2.0_Chr5g0037921 Rosa chinensis HOM05D005148 ORTHO05D006218 4.2e-23 113.2 79 72.2
BcaC01g03550 Brassica carinata HOM05D005148 ORTHO05D006218 5.4e-23 112.8 84 67.9
A03p41800 Brassica napus HOM05D005148 ORTHO05D006218 5.4e-23 112.8 84 67.9
C03p51180 Brassica napus HOM05D005148 ORTHO05D006218 5.4e-23 112.8 84 67.9
BolC3t17407H Brassica oleracea HOM05D005148 ORTHO05D006218 5.4e-23 112.8 84 67.9
BraA03t13333Z Brassica rapa HOM05D005148 ORTHO05D006218 5.4e-23 112.8 84 67.9
AL3G34380 Arabidopsis lyrata HOM05D005148 ORTHO05D006218 1.2e-22 111.7 99 61.6
Sp3g18560 Schrenkiella parvula HOM05D005148 ORTHO05D006218 1.2e-22 111.7 84 66.7
AT3G20550 Arabidopsis thaliana HOM05D005148 ORTHO05D006218 2.1e-22 110.9 90 64.4
SEGI_03914 Sequoiadendron giganteum HOM05D005148 ORTHO05D006218 2.7e-22 110.5 83 67.5
PSO541G0017 Papaver somniferum HOM05D005148 ORTHO05D006218 4.6e-22 109.8 81 74.1
PSO675G4432 Papaver somniferum HOM05D005148 ORTHO05D006218 4.6e-22 109.8 81 74.1
FAN11G3177 Fragaria x ananassa HOM05D005148 ORTHO05D006218 6.0e-22 109.4 71 76.1
Carub.0003s2052 Capsella rubella HOM05D005148 ORTHO05D006218 7.8e-22 109.0 75 70.7
RcHm_v2.0_Chr4g0405041 Rosa chinensis HOM05D005148 ORTHO05D006218 1.3e-21 108.2 82 65.9
EL10Ac5g11049 Beta vulgaris HOM05D005148 ORTHO05D006218 1.7e-21 107.8 97 61.9
SalBow7G4088 Salvia bowleyana HOM05D005148 ORTHO05D006218 1.7e-21 107.8 133 48.1
CARHR096320 Cardamine hirsuta HOM05D005148 ORTHO05D006218 6.6e-21 105.9 69 73.9
CDE02G2943 Ceratophyllum demersum HOM05D005148 ORTHO05D006218 8.7e-21 105.5 83 65.1
Zm00001eb286040 Zea mays HOM05D005148 ORTHO05D006218 1.1e-20 105.1 81 66.7
Os05g0545600 Oryza sativa ssp. japonica HOM05D005148 ORTHO05D006218 1.5e-20 104.8 73 71.2
Pp3c19_14080 Physcomitrium patens HOM05D005148 ORTHO05D006218 9.6e-20 102.1 71 70.4
Aqoxy5G02091 Aquilegia oxysepala HOM05D005148 ORTHO05D006218 2.8e-19 100.5 92 56.5
Mapoly0068s0031 Marchantia polymorpha HOM05D005148 ORTHO05D006218 2.8e-19 100.5 77 66.2
Hund14204 Selenicereus undatus HOM05D005148 ORTHO05D006218 2.8e-19 100.5 71 70.4
CBR_g38419 Chara braunii HOM05D005148 ORTHO05D006218 4.8e-19 99.8 67 73.1
TPR.G40522 Trifolium pratense HOM05D005148 ORTHO05D006218 5.3e-18 96.3 49 85.7
TPR.G13540 Trifolium pratense HOM05D005148 ORTHO05D006218 9.0e-18 95.5 49 87.8
Sabra16G0285400 Salix brachista HOM05D005148 ORTHO05D006218 2.6e-17 94.0 53 86.8
AagrBONN_evm.TU.Sc2ySwM_362.1748 Anthoceros agrestis HOM05D005148 ORTHO05D006218 5.8e-17 92.8 77 61.0
DCAR_019897 Daucus carota HOM05D005148 ORTHO05D006218 1.7e-16 91.3 49 85.7
Aa31LG8G7350 Aethionema arabicum HOM05D005148 ORTHO05D006218 1.1e-15 88.6 49 83.7
FvH4_6g43590 Fragaria vesca HOM05D005148 ORTHO05D006218 4.2e-15 86.7 61 63.9
FAN05G2630 Fragaria x ananassa HOM05D005148 ORTHO05D006218 7.1e-15 85.9 61 63.9
FAN09G4771 Fragaria x ananassa HOM05D005148 ORTHO05D006218 9.3e-15 85.5 61 62.3
FAN14G1203 Fragaria x ananassa HOM05D005148 ORTHO05D006218 3.5e-14 83.6 61 62.3
SMO367G0870 Selaginella moellendorffii HOM05D005148 ORTHO05D006218 1.8e-13 81.3 63 68.3
Actinidia10719 Actinidia chinensis HOM05D005148 ORTHO05D006218 9.6e-12 75.5 240 47.1
Peaxi162Scf00032g02417 Petunia axillaris HOM05D005148 ORTHO05D006218 9.6e-12 75.5 87 52.9
RcHm_v2.0_Chr2g0160171 Rosa chinensis HOM05D005148 ORTHO05D006218 4.8e-11 73.2 55 61.8
Oeu007601.1 Olea europaea HOM05D005148 ORTHO05D006218 1.2e-09 68.6 37 81.1
MCO09G834 Micromonas commoda HOM05D005148 ORTHO05D006218 2.6e-09 67.4 77 46.8
Lsat_1_v5_gn_5_38280 Lactuca sativa HOM05D005148 ORTHO05D006218 7.6e-09 65.9 38 71.1
AT2G24410 Arabidopsis thaliana HOM05D005148 ORTHO05D006218 1.3e-08 65.1 49 65.3
Cre09.g390430 Chlamydomonas reinhardtii HOM05D005148 ORTHO05D006218 8.4e-08 62.4 60 56.7
PRCOL_00003554 Prasinoderma coloniale HOM05D005148 ORTHO05D006218 3.5e-06 57.0 48 60.4


User provided reference genes

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