Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C017992.2 Cucumis melo HOM05D005641 ORTHO05D007953 2.9e-84 315.1 149 100.0
CsaV3_4G000430 Cucumis sativus L. HOM05D005641 ORTHO05D007953 2.8e-79 298.5 149 96.0
Sed0000346 Sechium edule HOM05D005641 ORTHO05D007953 3.4e-64 248.4 148 81.8
Thecc.02G114700 Theobroma cacao HOM05D005641 ORTHO05D007953 7.0e-62 240.7 148 74.3
MD05G1097100 Malus domestica HOM05D005641 ORTHO05D007953 2.0e-61 239.2 148 75.7
QL02p069388 Quercus lobata HOM05D005641 ORTHO05D007953 1.0e-60 236.9 147 75.5
COL.COLO4_32537 Corchorus olitorius HOM05D005641 ORTHO05D007953 2.9e-60 235.3 148 73.0
Cpa.g.sc106.73 Carica papaya HOM05D005641 ORTHO05D007953 1.9e-59 232.6 148 72.3
Prupe.8G141700 Prunus persica HOM05D005641 ORTHO05D007953 7.3e-59 230.7 148 73.0
Sabra09G0069700 Salix brachista HOM05D005641 ORTHO05D007953 7.3e-59 230.7 148 73.6
Duzib052G0024 Durio zibethinus HOM05D005641 ORTHO05D007953 9.5e-59 230.3 148 72.3
CiPaw.06G166900 Carya illinoinensis HOM05D005641 ORTHO05D007953 1.6e-58 229.6 151 71.5
GSVIVG01037858001 Vitis vinifera HOM05D005641 ORTHO05D007953 4.7e-58 228.0 143 71.3
CANSAT25G1977 Cannabis sativa HOM05D005641 ORTHO05D007953 1.4e-57 226.5 125 80.0
Hma1.2p1_1023F.1_g248880 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 2.3e-57 225.7 146 69.9
Haze_10242 Corylus avellana HOM05D005641 ORTHO05D007953 3.0e-57 225.3 119 84.0
Aqoxy6G02714 Aquilegia oxysepala HOM05D005641 ORTHO05D007953 5.2e-57 224.6 120 80.0
Cfa004645 Carpinus fangiana HOM05D005641 ORTHO05D007953 6.8e-57 224.2 119 84.0
Dinv42223 Davidia involucrata HOM05D005641 ORTHO05D007953 1.2e-56 223.4 148 72.3
FAN15G3008 Fragaria x ananassa HOM05D005641 ORTHO05D007953 1.2e-56 223.4 148 71.6
Oeu037265.1 Olea europaea HOM05D005641 ORTHO05D007953 1.2e-56 223.4 142 71.8
Potri.009G090100 Populus trichocarpa HOM05D005641 ORTHO05D007953 1.2e-56 223.4 148 70.9
RcHm_v2.0_Chr6g0253411 Rosa chinensis HOM05D005641 ORTHO05D007953 1.2e-56 223.4 148 70.3
PGR042G1829 Punica granatum HOM05D005641 ORTHO05D007953 1.5e-56 223.0 148 68.9
FvH4_2g04060 Fragaria vesca HOM05D005641 ORTHO05D007953 4.4e-56 221.5 148 71.6
FAN24G2036 Fragaria x ananassa HOM05D005641 ORTHO05D007953 5.7e-56 221.1 146 71.9
FAN20G2714 Fragaria x ananassa HOM05D005641 ORTHO05D007953 7.5e-56 220.7 147 70.7
Manes.10G080400 Manihot esculenta HOM05D005641 ORTHO05D007953 1.3e-55 219.9 144 72.9
Cc02_g19690 Coffea canephora HOM05D005641 ORTHO05D007953 2.9e-55 218.8 121 80.2
Carub.0003s2882 Capsella rubella HOM05D005641 ORTHO05D007953 6.4e-55 217.6 146 67.8
Eucgr.G01263 Eucalyptus grandis HOM05D005641 ORTHO05D007953 6.4e-55 217.6 149 67.1
Thhalv10022899m.g Eutrema salsugineum HOM05D005641 ORTHO05D007953 6.4e-55 217.6 146 67.8
Atru.chr5.2402 Acer truncatum HOM05D005641 ORTHO05D007953 8.3e-55 217.2 141 69.5
C09p12490 Brassica napus HOM05D005641 ORTHO05D007953 8.3e-55 217.2 141 70.2
BraA09t36698Z Brassica rapa HOM05D005641 ORTHO05D007953 8.3e-55 217.2 146 69.9
AT2G14825 Arabidopsis thaliana HOM05D005641 ORTHO05D007953 1.1e-54 216.9 146 67.8
BcaC04g23064 Brassica carinata HOM05D005641 ORTHO05D007953 1.1e-54 216.9 141 70.2
BolC9t54144H Brassica oleracea HOM05D005641 ORTHO05D007953 1.1e-54 216.9 141 70.2
PSO541G1794 Papaver somniferum HOM05D005641 ORTHO05D007953 1.4e-54 216.5 150 69.3
Sp3g28020 Schrenkiella parvula HOM05D005641 ORTHO05D007953 1.4e-54 216.5 141 67.4
CSS0033790 Camellia sinensis var. sinensis HOM05D005641 ORTHO05D007953 2.4e-54 215.7 123 76.4
vmacro19527 Vaccinium macrocarpon HOM05D005641 ORTHO05D007953 2.4e-54 215.7 150 70.0
Ciclev10029502m.g Citrus clementina HOM05D005641 ORTHO05D007953 3.2e-54 215.3 140 70.0
Gorai.005G232800 Gossypium raimondii HOM05D005641 ORTHO05D007953 3.2e-54 215.3 148 68.2
TWI14G0306 Tripterygium wilfordii HOM05D005641 ORTHO05D007953 4.1e-54 214.9 148 67.6
AL3G46570 Arabidopsis lyrata HOM05D005641 ORTHO05D007953 9.2e-54 213.8 146 67.1
A09p10560 Brassica napus HOM05D005641 ORTHO05D007953 1.2e-53 213.4 146 69.2
Gohir.D02G205400 Gossypium hirsutum HOM05D005641 ORTHO05D007953 1.2e-53 213.4 148 68.2
TAR376G1148 Trochodendron aralioides HOM05D005641 ORTHO05D007953 1.2e-53 213.4 117 80.3
AUR62031337 Chenopodium quinoa HOM05D005641 ORTHO05D007953 2.0e-53 212.6 148 68.9
PSO675G2895 Papaver somniferum HOM05D005641 ORTHO05D007953 2.0e-53 212.6 151 68.2
Aa31LG8G12890 Aethionema arabicum HOM05D005641 ORTHO05D007953 3.5e-53 211.8 146 65.8
CSS0039741 Camellia sinensis var. sinensis HOM05D005641 ORTHO05D007953 3.5e-53 211.8 123 74.8
DCAR_029115 Daucus carota HOM05D005641 ORTHO05D007953 4.6e-53 211.5 117 76.9
Rhsim05G0090100 Rhododendron simsii HOM05D005641 ORTHO05D007953 4.6e-53 211.5 150 69.3
CARHR284800 Cardamine hirsuta HOM05D005641 ORTHO05D007953 6.0e-53 211.1 146 67.1
Gohir.A03G183900 Gossypium hirsutum HOM05D005641 ORTHO05D007953 7.8e-53 210.7 148 66.9
Migut.N01150 Erythranthe guttata HOM05D005641 ORTHO05D007953 1.7e-52 209.5 148 66.9
Migut.O00678 Erythranthe guttata HOM05D005641 ORTHO05D007953 1.7e-52 209.5 148 67.6
unitig_744.g24456 Utricularia gibba HOM05D005641 ORTHO05D007953 1.7e-52 209.5 117 78.6
Ah.09g231980 Amaranthus hybridus HOM05D005641 ORTHO05D007953 2.3e-52 209.1 148 66.9
SGA_v2.0_scaffold337G49200 Striga asiatica HOM05D005641 ORTHO05D007953 2.3e-52 209.1 144 70.1
THA.LOC104819534 Tarenaya hassleriana HOM05D005641 ORTHO05D007953 2.3e-52 209.1 151 62.3
AUR62022504 Chenopodium quinoa HOM05D005641 ORTHO05D007953 3.0e-52 208.8 148 66.9
HanXRQChr03g0069981 Helianthus annuus HOM05D005641 ORTHO05D007953 3.0e-52 208.8 129 72.9
Sc14g0002550 Simmondsia chinensis HOM05D005641 ORTHO05D007953 5.0e-52 208.0 148 67.6
Eucgr.G01266 Eucalyptus grandis HOM05D005641 ORTHO05D007953 6.6e-52 207.6 146 64.4
PGSC0003DMG400005454 Solanum tuberosum HOM05D005641 ORTHO05D007953 2.5e-51 205.7 143 65.7
Nitab4.5_0012285g0030 Nicotiana tabacum HOM05D005641 ORTHO05D007953 3.3e-51 205.3 148 64.9
EL10Ac8g19366 Beta vulgaris HOM05D005641 ORTHO05D007953 4.3e-51 204.9 148 65.5
Lsat_1_v5_gn_9_112460 Lactuca sativa HOM05D005641 ORTHO05D007953 4.3e-51 204.9 125 72.0
Nn1g04606 Nelumbo nucifera HOM05D005641 ORTHO05D007953 4.3e-51 204.9 118 72.9
FAN27G3103 Fragaria x ananassa HOM05D005641 ORTHO05D007953 1.2e-50 203.4 140 70.0
Sopen10g020870 Solanum pennellii HOM05D005641 ORTHO05D007953 1.2e-50 203.4 144 65.3
Lj1g0011960 Lotus japonicus HOM05D005641 ORTHO05D007953 1.6e-50 203.0 142 64.8
Hund12610 Selenicereus undatus HOM05D005641 ORTHO05D007953 1.6e-50 203.0 127 70.9
Medtr5g005150 Medicago truncatula HOM05D005641 ORTHO05D007953 2.1e-50 202.6 123 71.5
Phvul.002G052300 Phaseolus vulgaris HOM05D005641 ORTHO05D007953 2.8e-50 202.2 140 65.7
ECA240G0483 Erigeron canadensis HOM05D005641 ORTHO05D007953 3.6e-50 201.8 130 69.2
TPR.G8292 Trifolium pratense HOM05D005641 ORTHO05D007953 1.1e-49 200.3 142 63.4
PGR042G3728 Punica granatum HOM05D005641 ORTHO05D007953 2.3e-49 199.1 147 61.2
MSTRG.5328 Avicennia marina HOM05D005641 ORTHO05D007953 4.0e-49 198.4 144 63.9
Actinidia27984 Actinidia chinensis HOM05D005641 ORTHO05D007953 6.8e-49 197.6 151 64.2
Solyc10g049650.3 Solanum lycopersicum HOM05D005641 ORTHO05D007953 1.2e-48 196.8 142 62.7
Nitab4.5_0001259g0120 Nicotiana tabacum HOM05D005641 ORTHO05D007953 1.5e-48 196.4 140 65.7
arahy.Tifrunner.gnm1.ann1.GRNJ5W Arachis hypogaea HOM05D005641 ORTHO05D007953 3.4e-48 195.3 124 71.0
CDE06G0500 Ceratophyllum demersum HOM05D005641 ORTHO05D007953 4.4e-48 194.9 148 60.8
CAN.G1.68 Capsicum annuum HOM05D005641 ORTHO05D007953 5.8e-48 194.5 141 62.4
Ciclev10028542m.g Citrus clementina HOM05D005641 ORTHO05D007953 7.5e-48 194.1 127 66.9
Peaxi162Scf00083g00163 Petunia axillaris HOM05D005641 ORTHO05D007953 2.2e-47 192.6 148 62.2
HPP92_020459 Vanilla planifolia HOM05D005641 ORTHO05D007953 4.9e-47 191.4 147 60.5
Os12g0508266 Oryza sativa ssp. japonica HOM05D005641 ORTHO05D007953 4.1e-46 188.3 123 65.0
SEGI_20221 Sequoiadendron giganteum HOM05D005641 ORTHO05D007953 4.1e-46 188.3 123 65.0
SEGI_25796 Sequoiadendron giganteum HOM05D005641 ORTHO05D007953 4.1e-46 188.3 123 65.0
VMungo1215G0158 Vigna mungo HOM05D005641 ORTHO05D007953 5.4e-46 188.0 167 54.5
Zm00001eb137960 Zea mays HOM05D005641 ORTHO05D007953 5.4e-46 188.0 151 57.0
HPP92_026175 Vanilla planifolia HOM05D005641 ORTHO05D007953 7.0e-46 187.6 147 59.9
QL02p069415 Quercus lobata HOM05D000030 ORTHO05D000009 9.2e-46 187.2 109 75.2
Glyma.01G243000 Glycine max HOM05D005641 ORTHO05D007953 3.0e-44 182.2 126 68.3
Hma1.2p1_1023F.1_g248890 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 1.8e-41 172.9 140 61.4
SalBow3G4250 Salvia bowleyana HOM05D005641 ORTHO05D007953 1.7e-36 156.4 83 81.9
arahy.Tifrunner.gnm1.ann1.C5GEYC Arachis hypogaea HOM05D005641 ORTHO05D007953 4.7e-34 148.3 144 56.9
Pp3c6_20250 Physcomitrium patens HOM05D005641 ORTHO05D007953 1.1e-33 147.1 116 55.2
Ca_24352_v3 Cicer arietinum L. HOM05D005641 ORTHO05D007953 2.0e-32 142.9 80 76.2
ClCG10G010510 Citrullus lanatus HOM05D005641 ORTHO05D007953 2.2e-31 139.4 149 53.7
SMO119G0506 Selaginella moellendorffii HOM05D005641 ORTHO05D007953 8.4e-31 137.5 117 52.1
Hma1.2p1_1023F.1_g248900 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 1.1e-30 137.1 82 73.2
FvH4_2g04050 Fragaria vesca HOM05D005641 ORTHO05D035713 1.5e-27 126.7 92 59.8
RcHm_v2.0_Chr6g0253401 Rosa chinensis HOM05D005641 ORTHO05D035713 2.5e-27 125.9 92 58.7
RcHm_v2.0_Chr6g0253251 Rosa chinensis HOM05D005641 ORTHO05D007953 1.2e-26 123.6 96 54.2
CBR_g32245 Chara braunii HOM05D005641 ORTHO05D007953 2.8e-26 122.5 114 44.7
Prupe.8G141500 Prunus persica HOM05D005641 ORTHO05D007953 3.1e-25 119.0 89 55.1
Psat4g227920 Pisum sativum HOM05D005641 ORTHO05D007953 4.0e-25 118.6 123 48.0
Lj9A326T79 Lonicera japonica HOM05D005641 ORTHO05D007953 7.6e-24 114.4 78 65.4
RcHm_v2.0_Chr6g0253291 Rosa chinensis HOM05D005641 ORTHO05D007953 9.9e-24 114.0 93 51.6
Peaxi162Scf00003g02633 Petunia axillaris HOM05D005641 ORTHO05D007953 1.7e-23 113.2 148 45.3
Lj9A326T80 Lonicera japonica HOM05D005641 ORTHO05D007953 4.2e-22 108.6 57 84.2
RcHm_v2.0_Chr6g0253261 Rosa chinensis HOM05D005641 ORTHO05D007953 3.0e-20 102.4 91 52.7
RcHm_v2.0_Chr6g0253371 Rosa chinensis HOM05D001615 ORTHO05D001493 3.9e-20 102.1 87 54.0
RcHm_v2.0_Chr6g0253341 Rosa chinensis HOM05D005641 ORTHO05D007953 2.1e-18 96.3 99 43.4
Lalb_Chr16g0376281 Lupinus albus HOM05D005641 ORTHO05D007953 1.9e-14 83.2 56 62.5
RcHm_v2.0_Chr6g0253281 Rosa chinensis HOM05D005641 ORTHO05D007953 4.6e-13 78.6 67 53.7
Nitab4.5_0007768g0030 Nicotiana tabacum HOM05D005641 ORTHO05D007953 7.4e-11 71.2 70 52.9
FAN24G2128 Fragaria x ananassa HOM05D005641 ORTHO05D208318 2.1e-10 69.7 65 47.7
Zm00001eb264710 Zea mays HOM05D005641 ORTHO05D007953 6.2e-10 68.2 41 75.6
Cfa004644 Carpinus fangiana HOM05D005641 ORTHO05D002074 4.5e-08 62.0 39 69.2
ATR0019G033 Amborella trichopoda HOM05D005641 ORTHO05D007953 1.3e-07 60.5 66 53.0
Nitab4.5_0003335g0050 Nicotiana tabacum HOM05D002499 ORTHO05D002812 3.8e-07 58.9 63 36.5
Nitab4.5_0013410g0010 Nicotiana tabacum HOM05D005641 ORTHO05D007953 8.4e-07 57.8 70 45.7
CAN.G438.90 Capsicum annuum HOM05D002499 ORTHO05D002812 1.4e-06 57.0 63 34.9
FAN15G0330 Fragaria x ananassa HOM05D005641 ORTHO05D007953 1.9e-06 56.6 41 51.2
Peaxi162Scf00023g01330 Petunia axillaris HOM05D002499 ORTHO05D002812 1.9e-06 56.6 63 33.3
Solyc03g120000.3 Solanum lycopersicum HOM05D002499 ORTHO05D002812 1.9e-06 56.6 63 34.9
Sopen03g038880 Solanum pennellii HOM05D002499 ORTHO05D002812 1.9e-06 56.6 63 34.9
PGSC0003DMG400005610 Solanum tuberosum HOM05D002499 ORTHO05D002812 1.9e-06 56.6 63 34.9
FAN15G1393 Fragaria x ananassa HOM05D005641 ORTHO05D035713 2.4e-06 56.2 88 38.6


User provided reference genes

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