Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C017956.2 Cucumis melo HOM05D004753 ORTHO05D005920 4.4e-187 657.9 355 100.0
CsaV3_4G000800 Cucumis sativus L. HOM05D004753 ORTHO05D005920 9.8e-179 630.2 355 95.8
ClCG10G010920 Citrullus lanatus HOM05D004753 ORTHO05D005920 1.6e-168 596.3 309 97.7
Sed0000474 Sechium edule HOM05D004753 ORTHO05D005920 8.3e-162 573.9 311 92.9
CiPaw.14G100000 Carya illinoinensis HOM05D004753 ORTHO05D005920 5.8e-155 551.2 316 87.7
QL12p028506 Quercus lobata HOM05D004753 ORTHO05D005920 1.4e-153 546.6 318 86.2
QL09p032163 Quercus lobata HOM05D004753 ORTHO05D005920 3.2e-153 545.4 314 86.3
Eucgr.K03479 Eucalyptus grandis HOM05D004753 ORTHO05D005920 1.3e-151 540.0 319 84.3
Haze_24929 Corylus avellana HOM05D004753 ORTHO05D005920 3.9e-151 538.5 338 82.0
Oeu046682.2 Olea europaea HOM05D004753 ORTHO05D005920 3.9e-151 538.5 319 84.6
PGR044G2668 Punica granatum HOM05D004753 ORTHO05D005920 3.9e-151 538.5 321 83.5
Ciclev10023300m.g Citrus clementina HOM05D004753 ORTHO05D005920 1.5e-150 536.6 307 88.6
Haze_04935 Corylus avellana HOM05D004753 ORTHO05D005920 1.5e-150 536.6 316 85.1
MD03G1288000 Malus domestica HOM05D004753 ORTHO05D005920 1.5e-150 536.6 317 84.5
GSVIVG01028012001 Vitis vinifera HOM05D004753 ORTHO05D005920 1.5e-150 536.6 331 81.3
MD11G1310300 Malus domestica HOM05D004753 ORTHO05D005920 3.3e-150 535.4 316 85.1
CSS0011058 Camellia sinensis var. sinensis HOM05D004753 ORTHO05D005920 5.6e-150 534.6 303 86.1
Cc09_g07750 Coffea canephora HOM05D004753 ORTHO05D005920 5.6e-150 534.6 312 86.2
Cpa.g.sc16.169 Carica papaya HOM05D004753 ORTHO05D005920 7.3e-150 534.3 324 83.6
Sabra02G0154600 Salix brachista HOM05D004753 ORTHO05D005920 7.3e-150 534.3 312 86.2
Potri.002G204900 Populus trichocarpa HOM05D004753 ORTHO05D005920 9.5e-150 533.9 325 81.2
CANSAT54G1658 Cannabis sativa HOM05D004753 ORTHO05D005920 1.6e-149 533.1 303 85.5
TAR636G3371 Trochodendron aralioides HOM05D004753 ORTHO05D005920 1.6e-149 533.1 314 85.4
Potri.014G129700 Populus trichocarpa HOM05D004753 ORTHO05D005920 2.1e-149 532.7 330 80.6
vmacro15009 Vaccinium macrocarpon HOM05D004753 ORTHO05D005920 1.1e-148 530.4 316 83.2
THA.LOC104818291 Tarenaya hassleriana HOM05D004753 ORTHO05D005920 1.4e-148 530.0 317 84.9
Nn3g21484 Nelumbo nucifera HOM05D004753 ORTHO05D005920 2.4e-148 529.3 319 84.0
Atru.chr5.901 Acer truncatum HOM05D004753 ORTHO05D005920 1.2e-147 526.9 336 82.1
Manes.01G218800 Manihot esculenta HOM05D004753 ORTHO05D005920 1.2e-147 526.9 319 83.1
Sabra14G0096300 Salix brachista HOM05D004753 ORTHO05D005920 4.4e-147 525.0 328 80.8
Lsat_1_v5_gn_4_87281 Lactuca sativa HOM05D004753 ORTHO05D005920 5.8e-147 524.6 313 84.3
TWI59G0801 Tripterygium wilfordii HOM05D004753 ORTHO05D005920 7.6e-147 524.2 316 82.0
Thecc.01G300100 Theobroma cacao HOM05D004753 ORTHO05D005920 8.4e-146 520.8 328 81.1
Oeu011458.1 Olea europaea HOM05D004753 ORTHO05D005920 1.9e-145 519.6 319 81.2
Duzib138G1754 Durio zibethinus HOM05D004753 ORTHO05D005920 2.4e-145 519.2 323 81.1
Lj2A1194G52 Lonicera japonica HOM05D004753 ORTHO05D005920 2.4e-145 519.2 302 86.1
MBI18_g06877_MAGBIO Magnolia biondii HOM05D004753 ORTHO05D005920 9.2e-145 517.3 304 85.9
SGA_v2.0_scaffold2G01394 Striga asiatica HOM05D004753 ORTHO05D005920 1.6e-144 516.5 311 82.3
Duzib133G0229 Durio zibethinus HOM05D004753 ORTHO05D005920 2.1e-144 516.2 318 82.1
Peaxi162Scf01084g00120 Petunia axillaris HOM05D004753 ORTHO05D005920 6.0e-144 514.6 316 81.0
Sp2g24970 Schrenkiella parvula HOM05D004753 ORTHO05D005920 7.8e-144 514.2 317 83.3
MSTRG.18152 Avicennia marina HOM05D004753 ORTHO05D005920 1.7e-143 513.1 319 79.9
Rhsim01G0243400 Rhododendron simsii HOM05D004753 ORTHO05D005920 1.7e-143 513.1 372 72.6
HanXRQChr08g0207921 Helianthus annuus HOM05D004753 ORTHO05D005920 1.1e-142 510.4 299 85.6
Gorai.004G142400 Gossypium raimondii HOM05D004753 ORTHO05D005920 1.5e-142 510.0 318 81.1
Thhalv10004503m.g Eutrema salsugineum HOM05D004753 ORTHO05D005920 2.5e-142 509.2 317 82.0
Aqoxy2G02947 Aquilegia oxysepala HOM05D004753 ORTHO05D005920 5.6e-142 508.1 322 79.2
Gohir.D08G138800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 9.6e-142 507.3 318 80.5
COL.COLO4_23348 Corchorus olitorius HOM05D004753 ORTHO05D005920 1.2e-141 506.9 332 78.3
AL8G38530 Arabidopsis lyrata HOM05D004753 ORTHO05D005920 2.8e-141 505.8 320 80.6
SalBow3G1002 Salvia bowleyana HOM05D004753 ORTHO05D005920 2.8e-141 505.8 315 80.6
ECA238G0492 Erigeron canadensis HOM05D004753 ORTHO05D005920 4.7e-141 505.0 316 80.4
CARHR275530 Cardamine hirsuta HOM05D004753 ORTHO05D005920 6.2e-141 504.6 317 81.7
Gohir.A08G117800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 6.2e-141 504.6 312 81.7
SGA_v2.0_scaffold1G00368 Striga asiatica HOM05D004753 ORTHO05D005920 8.1e-141 504.2 357 73.9
BcaC04g23436 Brassica carinata HOM05D004753 ORTHO05D005920 1.8e-140 503.1 327 80.1
C09p08350 Brassica napus HOM05D004753 ORTHO05D005920 1.8e-140 503.1 327 80.1
BolC9t53745H Brassica oleracea HOM05D004753 ORTHO05D005920 1.8e-140 503.1 327 80.1
Nitab4.5_0002687g0080 Nicotiana tabacum HOM05D004753 ORTHO05D005920 4.0e-140 501.9 319 79.6
Aa31LG11G1720 Aethionema arabicum HOM05D004753 ORTHO05D005920 6.9e-140 501.1 330 77.6
AT5G61770 Arabidopsis thaliana HOM05D004753 ORTHO05D005920 1.5e-139 500.0 317 80.4
BraA09t36398Z Brassica rapa HOM05D004753 ORTHO05D005920 2.6e-139 499.2 328 79.3
Carub.0008s2246 Capsella rubella HOM05D004753 ORTHO05D005920 3.4e-139 498.8 303 82.8
DCAR_012396 Daucus carota HOM05D004753 ORTHO05D005920 4.4e-139 498.4 311 80.1
A06p28420 Brassica napus HOM05D004753 ORTHO05D005920 9.9e-139 497.3 323 79.3
BraA06t25786Z Brassica rapa HOM05D004753 ORTHO05D005920 9.9e-139 497.3 323 79.3
BcaC01g02428 Brassica carinata HOM05D004753 ORTHO05D005920 1.7e-138 496.5 338 77.2
A09p07440 Brassica napus HOM05D004753 ORTHO05D005920 1.7e-138 496.5 334 78.1
C03p65390 Brassica napus HOM05D004753 ORTHO05D005920 1.7e-138 496.5 338 77.2
BolC3t18792H Brassica oleracea HOM05D004753 ORTHO05D005920 1.7e-138 496.5 338 77.2
Nitab4.5_0008999g0010 Nicotiana tabacum HOM05D004753 ORTHO05D005920 2.2e-138 496.1 297 82.5
BcaB02g09600 Brassica carinata HOM05D004753 ORTHO05D005920 2.9e-138 495.7 316 81.0
PGSC0003DMG401027528 Solanum tuberosum HOM05D004753 ORTHO05D005920 3.2e-137 492.3 315 78.1
Hund05425 Selenicereus undatus HOM05D004753 ORTHO05D005920 5.4e-137 491.5 318 79.6
Sc17g0002740 Simmondsia chinensis HOM05D004753 ORTHO05D005920 1.6e-136 490.0 312 76.9
PSO832G3876 Papaver somniferum HOM05D004753 ORTHO05D005920 6.6e-135 484.6 314 77.1
CAN.G134.43 Capsicum annuum HOM05D004753 ORTHO05D005920 1.1e-134 483.8 312 78.5
BcaNung01420 Brassica carinata HOM05D004753 ORTHO05D005920 2.5e-134 482.6 332 76.8
Glyma.12G026700 Glycine max HOM05D004753 ORTHO05D005920 2.5e-134 482.6 319 76.2
PSO017G3074 Papaver somniferum HOM05D004753 ORTHO05D005920 3.3e-134 482.3 313 77.0
PSO210G3006 Papaver somniferum HOM05D004753 ORTHO05D005920 7.3e-134 481.1 311 77.2
Solyc01g096800.3 Solanum lycopersicum HOM05D004753 ORTHO05D005920 7.3e-134 481.1 318 76.1
Ca_19020_v3 Cicer arietinum L. HOM05D004753 ORTHO05D005920 1.3e-133 480.3 319 74.9
PSO170G0569 Papaver somniferum HOM05D004753 ORTHO05D005920 1.6e-133 479.9 311 76.8
Sopen01g040500 Solanum pennellii HOM05D004753 ORTHO05D005920 3.6e-133 478.8 318 75.8
ATR0584G246 Amborella trichopoda HOM05D004753 ORTHO05D005920 4.8e-133 478.4 298 78.9
Lj3g0027269 Lotus japonicus HOM05D004753 ORTHO05D005920 6.2e-133 478.0 326 74.8
RcHm_v2.0_Chr6g0293981 Rosa chinensis HOM05D004753 ORTHO05D005920 1.1e-132 477.2 322 74.2
Actinidia15830 Actinidia chinensis HOM05D004753 ORTHO05D005920 2.4e-132 476.1 309 79.6
FvH4_2g25700 Fragaria vesca HOM05D004753 ORTHO05D005920 3.1e-132 475.7 320 74.7
FAN24G0086 Fragaria x ananassa HOM05D004753 ORTHO05D005920 3.1e-132 475.7 320 74.7
Glyma.11G100700 Glycine max HOM05D004753 ORTHO05D005920 4.0e-132 475.3 334 72.8
arahy.Tifrunner.gnm1.ann1.89EUFG Arachis hypogaea HOM05D004753 ORTHO05D005920 5.3e-132 474.9 320 75.9
arahy.Tifrunner.gnm1.ann1.B7L3V1 Arachis hypogaea HOM05D004753 ORTHO05D005920 5.3e-132 474.9 320 75.9
VMungo1127G1640 Vigna mungo HOM05D004753 ORTHO05D005920 5.3e-132 474.9 321 75.1
Phvul.011G029700 Phaseolus vulgaris HOM05D004753 ORTHO05D005920 1.5e-131 473.4 303 77.9
HPP92_002997 Vanilla planifolia HOM05D004753 ORTHO05D005920 2.6e-131 472.6 317 74.8
HanXRQChr12g0368811 Helianthus annuus HOM05D004753 ORTHO05D005920 1.3e-130 470.3 301 79.7
FAN15G2487 Fragaria x ananassa HOM05D004753 ORTHO05D005920 2.2e-130 469.5 325 73.2
AUR62008626 Chenopodium quinoa HOM05D004753 ORTHO05D005920 4.9e-130 468.4 301 75.4
FAN27G0535 Fragaria x ananassa HOM05D004753 ORTHO05D005920 8.4e-130 467.6 325 72.9
FAN20G2170 Fragaria x ananassa HOM05D004753 ORTHO05D005920 5.4e-129 464.9 321 72.9
Dinv37873 Davidia involucrata HOM05D004753 ORTHO05D005920 7.9e-128 461.1 270 84.8
TPR.G32348 Trifolium pratense HOM05D004753 ORTHO05D005920 1.8e-127 459.9 310 74.2
Lalb_Chr01g0001441 Lupinus albus HOM05D004753 ORTHO05D005920 4.3e-126 455.3 325 72.9
unitig_26.g10170 Utricularia gibba HOM05D004753 ORTHO05D005920 2.6e-123 446.0 259 84.2
AUR62033145 Chenopodium quinoa HOM05D004753 ORTHO05D005920 4.0e-116 422.2 301 69.8
Ah.15g093220 Amaranthus hybridus HOM05D004753 ORTHO05D005920 6.5e-114 414.8 309 70.6
Ah.08g213470 Amaranthus hybridus HOM05D004753 ORTHO05D005920 1.1e-113 414.1 323 68.7
TAR365G0243 Trochodendron aralioides HOM05D004753 ORTHO05D005920 4.3e-110 402.1 231 87.9
Prupe.8G261200 Prunus persica HOM05D004753 ORTHO05D005920 8.2e-109 397.9 231 84.4
Os03g0343700 Oryza sativa ssp. japonica HOM05D004753 ORTHO05D005920 9.0e-108 394.4 313 62.3
Pp3c2_30030 Physcomitrium patens HOM05D004753 ORTHO05D005920 1.4e-105 387.1 296 62.2
CDE09G1083 Ceratophyllum demersum HOM05D004753 ORTHO05D005920 2.5e-105 386.3 261 73.9
SMO331G0088 Selaginella moellendorffii HOM05D004753 ORTHO05D005920 3.2e-105 386.0 283 64.3
Medtr4g075050 Medicago truncatula HOM05D004753 ORTHO05D005920 1.8e-103 380.2 353 62.9
Zm00001eb016460 Zea mays HOM05D004753 ORTHO05D005920 3.0e-103 379.4 314 62.1
Gorai.002G117300 Gossypium raimondii HOM05D004753 ORTHO05D005920 2.0e-102 376.7 292 69.5
Actinidia01484 Actinidia chinensis HOM05D004753 ORTHO05D005920 2.8e-101 372.9 278 73.0
Mapoly0097s0041 Marchantia polymorpha HOM05D004753 ORTHO05D005920 4.8e-101 372.1 273 63.7
Aqoxy311s002 Aquilegia oxysepala HOM05D004753 ORTHO05D005920 3.1e-100 369.4 232 79.3
AagrBONN_evm.TU.Sc2ySwM_362.2675 Anthoceros agrestis HOM05D004753 ORTHO05D005920 5.9e-99 365.2 325 56.9
Psat7g177400 Pisum sativum HOM05D004753 ORTHO05D005920 5.0e-98 362.1 235 76.6
Sed0023746 Sechium edule HOM05D004753 ORTHO05D005920 3.3e-86 322.8 356 57.6
CBR_g227 Chara braunii HOM05D004753 ORTHO05D005920 4.4e-86 322.4 263 60.1
Actinidia32213 Actinidia chinensis HOM05D004753 ORTHO05D005920 9.1e-84 314.7 242 69.4
Cre10.g450879 Chlamydomonas reinhardtii HOM05D004753 ORTHO05D005920 3.7e-77 292.7 312 46.2
MCO08G191 Micromonas commoda HOM05D004753 ORTHO05D005920 6.5e-74 282.0 318 46.2
THA.LOC104801723 Tarenaya hassleriana HOM05D004753 ORTHO05D005920 4.7e-72 275.8 149 86.6
Gorai.012G092400 Gossypium raimondii HOM05D004753 ORTHO05D005920 1.0e-66 258.1 166 79.5
PRCOL_00006477 Prasinoderma coloniale HOM05D004753 ORTHO05D005920 2.7e-51 206.8 243 43.2
AUR62033152 Chenopodium quinoa HOM05D004753 ORTHO05D005920 6.2e-48 195.7 158 63.9
Migut.B01152 Erythranthe guttata HOM05D004753 ORTHO05D005920 2.4e-44 183.7 112 78.6
Haze_27315 Corylus avellana HOM05D004753 ORTHO05D005920 1.0e-42 178.3 315 36.8
Cfa026076 Carpinus fangiana HOM05D004753 ORTHO05D005920 8.1e-40 168.7 409 31.5
Gohir.D11G077800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 1.1e-39 168.3 194 50.5
Gohir.D04G081932 Gossypium hirsutum HOM05D004753 ORTHO05D005920 2.7e-35 153.7 94 77.7
Gohir.D02G011800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 7.8e-35 152.1 94 76.6
Gorai.005G015000 Gossypium raimondii HOM05D004753 ORTHO05D005920 7.8e-35 152.1 94 76.6
MD08G1232400 Malus domestica HOM05D004753 ORTHO05D005920 1.1e-33 148.3 106 71.7
arahy.Tifrunner.gnm1.ann1.81M7HI Arachis hypogaea HOM05D004753 ORTHO05D005920 7.3e-33 145.6 114 70.2
arahy.Tifrunner.gnm1.ann1.JRXS1U Arachis hypogaea HOM05D004753 ORTHO05D005920 2.8e-32 143.7 95 78.9
Actinidia16175 Actinidia chinensis HOM05D004753 ORTHO05D005920 4.7e-32 142.9 84 83.3
Gorai.007G256100 Gossypium raimondii HOM05D004753 ORTHO05D005920 1.6e-19 101.3 64 79.7
Migut.D00217 Erythranthe guttata HOM05D004753 ORTHO05D005920 1.3e-16 91.7 94 55.3
PGSC0003DMG400004411 Solanum tuberosum HOM05D004753 ORTHO05D005920 2.8e-16 90.5 53 79.2
TAR629G0138 Trochodendron aralioides HOM05D004753 ORTHO05D005920 8.1e-16 89.0 99 55.6
CANSAT21G1846 Cannabis sativa HOM05D000521 ORTHO05D000384 5.8e-14 82.8 49 77.6
Hma1.2p1_1471F.1_g285675 Hydrangea macrophylla HOM05D004753 ORTHO05D005920 7.6e-14 82.4 48 81.2
Hma1.2p1_1471F.1_g285690 Hydrangea macrophylla HOM05D004753 ORTHO05D005920 7.6e-14 82.4 48 81.2
TAR624G1091 Trochodendron aralioides HOM05D004877 ORTHO05D005942 1.3e-13 81.6 58 75.9
Gorai.004G103000 Gossypium raimondii HOM05D002536 ORTHO05D006290 4.3e-09 66.6 84 45.2


User provided reference genes

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