Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C017004.2 Cucumis melo HOM05D005865 ORTHO05D006867 2.6e-275 951.4 473 100.0
CsaV3_4G037060 Cucumis sativus L. HOM05D005865 ORTHO05D006867 3.5e-256 887.9 524 87.0
ClCG05G015260 Citrullus lanatus HOM05D005865 ORTHO05D006867 1.0e-231 806.6 583 74.3
Sed0014892 Sechium edule HOM05D005865 ORTHO05D006867 1.2e-216 756.5 534 74.2
Cfa014029 Carpinus fangiana HOM05D005865 ORTHO05D006867 7.0e-148 528.1 557 54.4
Thecc.08G054600 Theobroma cacao HOM05D005865 ORTHO05D006867 2.3e-143 513.1 550 52.7
CiPaw.07G141800 Carya illinoinensis HOM05D005865 ORTHO05D006867 3.0e-143 512.7 569 52.7
Gohir.A05G181600 Gossypium hirsutum HOM05D005865 ORTHO05D006867 3.7e-141 505.8 499 56.5
GSVIVG01008710001 Vitis vinifera HOM05D005865 ORTHO05D006867 6.3e-141 505.0 516 55.2
Gohir.D05G184600 Gossypium hirsutum HOM05D005865 ORTHO05D006867 1.0e-138 497.7 547 52.8
Gorai.009G190100 Gossypium raimondii HOM05D005865 ORTHO05D006867 1.3e-138 497.3 547 52.8
Atru.chr13.184 Acer truncatum HOM05D005865 ORTHO05D006867 3.8e-138 495.7 511 53.8
Potri.005G247500 Populus trichocarpa HOM05D005865 ORTHO05D006867 4.2e-137 492.3 563 50.6
Ciclev10000742m.g Citrus clementina HOM05D005865 ORTHO05D006867 5.5e-137 491.9 559 51.9
Duzib093G0711 Durio zibethinus HOM05D005865 ORTHO05D006867 1.2e-134 484.2 538 52.0
CSS0021595 Camellia sinensis var. sinensis HOM05D005865 ORTHO05D006867 1.5e-134 483.8 536 51.5
TAR381G0423 Trochodendron aralioides HOM05D005865 ORTHO05D006867 5.7e-134 481.9 539 51.0
Lalb_Chr03g0033591 Lupinus albus HOM05D005865 ORTHO05D006867 1.7e-133 480.3 516 52.3
Hma1.2p1_1100F.1_g257160 Hydrangea macrophylla HOM05D005865 ORTHO05D006867 6.3e-133 478.4 529 51.6
Nn5g30889 Nelumbo nucifera HOM05D005865 ORTHO05D006867 9.2e-132 474.6 521 52.2
RcHm_v2.0_Chr6g0303901 Rosa chinensis HOM05D005865 ORTHO05D006867 9.2e-132 474.6 504 52.6
COL.COLO4_26054 Corchorus olitorius HOM05D005865 ORTHO05D006867 3.5e-131 472.6 409 61.9
MD08G1005300 Malus domestica HOM05D005865 ORTHO05D006867 4.5e-131 472.2 497 52.5
Aqoxy6G01868 Aquilegia oxysepala HOM05D005865 ORTHO05D006867 7.8e-131 471.5 538 49.4
CANSAT56G1424 Cannabis sativa HOM05D005865 ORTHO05D006867 1.0e-130 471.1 535 49.5
PSO675G0073 Papaver somniferum HOM05D005865 ORTHO05D006867 1.0e-130 471.1 516 52.1
PSO541G4963 Papaver somniferum HOM05D005865 ORTHO05D006867 1.3e-130 470.7 515 51.5
arahy.Tifrunner.gnm1.ann1.88Q24L Arachis hypogaea HOM05D005865 ORTHO05D006867 2.9e-130 469.5 533 50.1
Actinidia37960 Actinidia chinensis HOM05D005865 ORTHO05D006867 3.8e-130 469.2 530 50.8
Ah.00g000500 Amaranthus hybridus HOM05D005865 ORTHO05D006867 2.5e-129 466.5 506 50.6
Manes.18G007801 Manihot esculenta HOM05D005865 ORTHO05D006867 3.3e-129 466.1 520 51.5
PGR031G3425 Punica granatum HOM05D005865 ORTHO05D006867 4.3e-129 465.7 528 51.5
arahy.Tifrunner.gnm1.ann1.YCE7MW Arachis hypogaea HOM05D005865 ORTHO05D006867 7.3e-129 464.9 516 51.4
Lsat_1_v5_gn_2_5921 Lactuca sativa HOM05D005865 ORTHO05D006867 2.1e-128 463.4 515 49.7
VMungo0647G1107 Vigna mungo HOM05D005865 ORTHO05D006867 2.1e-128 463.4 493 52.5
DCAR_013898 Daucus carota HOM05D005865 ORTHO05D006867 1.4e-127 460.7 528 50.0
Rhsim07G0252700 Rhododendron simsii HOM05D005865 ORTHO05D006867 1.8e-127 460.3 620 46.3
Solyc04g082130.4 Solanum lycopersicum HOM05D005865 ORTHO05D006867 6.8e-127 458.4 521 51.1
vmacro04388 Vaccinium macrocarpon HOM05D005865 ORTHO05D006867 8.9e-127 458.0 626 47.0
Phvul.001G001600 Phaseolus vulgaris HOM05D005865 ORTHO05D006867 1.2e-126 457.6 483 53.2
Sopen04g035760 Solanum pennellii HOM05D005865 ORTHO05D006867 1.2e-126 457.6 523 50.9
MSTRG.1133 Avicennia marina HOM05D005865 ORTHO05D006867 1.5e-126 457.2 555 48.1
Hund05136 Selenicereus undatus HOM05D005865 ORTHO05D006867 2.0e-126 456.8 516 50.8
SGA_v2.0_scaffold25G11198 Striga asiatica HOM05D005865 ORTHO05D006867 2.0e-126 456.8 512 50.2
Lj5g0011422 Lotus japonicus HOM05D005865 ORTHO05D006867 2.6e-126 456.4 488 53.1
Glyma.14G222900 Glycine max HOM05D005865 ORTHO05D006867 7.5e-126 454.9 484 53.1
Psat0s4771g0080 Pisum sativum HOM05D005865 ORTHO05D006867 9.8e-126 454.5 484 52.5
PGSC0003DMG400009964 Solanum tuberosum HOM05D005865 ORTHO05D006867 1.3e-125 454.1 521 50.9
TWI36G0296 Tripterygium wilfordii HOM05D005865 ORTHO05D006867 9.2e-124 448.0 484 52.9
Migut.N03192 Erythranthe guttata HOM05D005865 ORTHO05D006867 3.5e-123 446.0 515 48.3
CARHR020860 Cardamine hirsuta HOM05D005865 ORTHO05D006867 2.3e-122 443.4 470 52.3
SalBow6G0433 Salvia bowleyana HOM05D005865 ORTHO05D006867 2.3e-122 443.4 487 50.1
BraA06t24751Z Brassica rapa HOM05D005865 ORTHO05D006867 3.0e-122 443.0 468 51.7
BcaB07g32044 Brassica carinata HOM05D005865 ORTHO05D006867 3.9e-122 442.6 506 49.8
Eucgr.F03532 Eucalyptus grandis HOM05D005865 ORTHO05D006867 8.6e-122 441.4 563 47.4
BolC5t30602H Brassica oleracea HOM05D005865 ORTHO05D006867 1.1e-121 441.0 468 52.1
Peaxi162Scf00174g01413 Petunia axillaris HOM05D005865 ORTHO05D006867 1.9e-121 440.3 534 47.9
BcaC05g25951 Brassica carinata HOM05D005865 ORTHO05D006867 1.2e-120 437.6 468 51.9
Sp1g18130 Schrenkiella parvula HOM05D005865 ORTHO05D006867 1.6e-120 437.2 470 52.8
C05p19010 Brassica napus HOM05D005865 ORTHO05D006867 2.1e-120 436.8 468 51.9
Thhalv10007426m.g Eutrema salsugineum HOM05D005865 ORTHO05D006867 2.8e-120 436.4 468 50.9
HanXRQChr14g0428991 Helianthus annuus HOM05D005865 ORTHO05D006867 4.7e-120 435.6 484 50.4
Carub.0001s1989 Capsella rubella HOM05D005865 ORTHO05D006867 6.2e-120 435.3 470 50.9
Sabra05G0191400 Salix brachista HOM05D005865 ORTHO05D006867 1.1e-119 434.5 536 47.9
CDE02G0067 Ceratophyllum demersum HOM05D005865 ORTHO05D006867 1.8e-119 433.7 502 48.6
Cc10_g00980 Coffea canephora HOM05D005865 ORTHO05D006867 1.8e-119 433.7 532 47.9
AT1G20410 Arabidopsis thaliana HOM05D005865 ORTHO05D006867 3.1e-119 433.0 468 51.3
THA.LOC104813767 Tarenaya hassleriana HOM05D005865 ORTHO05D006867 5.8e-118 428.7 503 49.7
Aa31LG7G4730 Aethionema arabicum HOM05D005865 ORTHO05D006867 1.7e-117 427.2 470 50.9
FAN27G0680 Fragaria x ananassa HOM05D005865 ORTHO05D006867 1.7e-117 427.2 558 45.9
AL1G33330 Arabidopsis lyrata HOM05D005865 ORTHO05D006867 2.2e-117 426.8 470 50.9
BraA07t29307Z Brassica rapa HOM05D005865 ORTHO05D006867 3.7e-117 426.0 473 52.0
ECA238G0937 Erigeron canadensis HOM05D005865 ORTHO05D006867 4.9e-117 425.6 440 53.6
Prupe.1G357400 Prunus persica HOM05D005865 ORTHO05D006867 8.3e-117 424.9 415 54.9
Lj4A15G44 Lonicera japonica HOM05D005865 ORTHO05D006867 9.2e-116 421.4 458 52.4
BcaNung03380 Brassica carinata HOM05D005865 ORTHO05D006867 1.6e-115 420.6 467 50.5
C07p23040 Brassica napus HOM05D005865 ORTHO05D006867 3.5e-115 419.5 500 48.4
BolC7t42845H Brassica oleracea HOM05D005865 ORTHO05D006867 3.5e-115 419.5 500 48.4
CAN.G311.92 Capsicum annuum HOM05D005865 ORTHO05D006867 3.0e-114 416.4 462 50.6
ATR0665G248 Amborella trichopoda HOM05D005865 ORTHO05D006867 1.9e-113 413.7 508 48.2
Nitab4.5_0000588g0310 Nicotiana tabacum HOM05D005865 ORTHO05D006867 3.3e-113 412.9 526 45.6
Medtr1g026400 Medicago truncatula HOM05D005865 ORTHO05D006867 4.4e-110 402.5 475 48.8
A07p15800 Brassica napus HOM05D005865 ORTHO05D006867 5.8e-110 402.1 489 49.1
Os04g0561700 Oryza sativa ssp. japonica HOM05D005865 ORTHO05D006867 9.9e-110 401.4 509 45.6
AL1G33260 Arabidopsis lyrata HOM05D005865 ORTHO05D006867 1.9e-108 397.1 451 50.1
QL02p013522 Quercus lobata HOM05D005865 ORTHO05D006867 7.1e-108 395.2 453 51.2
Zm00001eb074060 Zea mays HOM05D005865 ORTHO05D006867 7.8e-107 391.7 520 46.0
AUR62013839 Chenopodium quinoa HOM05D005865 ORTHO05D006867 6.6e-106 388.7 497 47.1
FvH4_2g37810 Fragaria vesca HOM05D005865 ORTHO05D006867 2.5e-105 386.7 439 49.7
HPP92_014547 Vanilla planifolia HOM05D005865 ORTHO05D006867 7.3e-105 385.2 531 45.0
Dinv31911 Davidia involucrata HOM05D005865 ORTHO05D006867 1.3e-101 374.4 462 49.1
Sc15g0004650 Simmondsia chinensis HOM05D005865 ORTHO05D006867 3.9e-98 362.8 383 52.0
A06p16480 Brassica napus HOM05D005865 ORTHO05D006867 3.6e-96 356.3 351 54.7
unitig_747.g21718 Utricularia gibba HOM05D005865 ORTHO05D006867 5.4e-92 342.4 527 41.9
Ca_13490_v3 Cicer arietinum L. HOM05D005865 ORTHO05D006867 3.3e-89 333.2 311 58.8
Hma1.2p1_1100F.1_g257170 Hydrangea macrophylla HOM05D005865 ORTHO05D006867 2.4e-87 327.0 229 69.0
AUR62036767 Chenopodium quinoa HOM05D005865 ORTHO05D006867 3.4e-86 323.2 383 49.3
AagrBONN_evm.TU.Sc2ySwM_344.4811 Anthoceros agrestis HOM05D005865 ORTHO05D006867 5.4e-84 315.8 528 38.8
Pp3c20_10980 Physcomitrium patens HOM05D005865 ORTHO05D006867 1.2e-83 314.7 538 38.3
BcaB03g14323 Brassica carinata HOM05D005865 ORTHO05D006867 6.0e-83 312.4 227 66.5
Mapoly0006s0010 Marchantia polymorpha HOM05D005865 ORTHO05D006867 1.8e-82 310.8 526 38.2
EL10Ac1g02030 Beta vulgaris HOM05D005865 ORTHO05D006867 8.7e-74 282.0 390 44.6
A07p15700 Brassica napus HOM05D005865 ORTHO05D006867 8.2e-72 275.4 206 65.0
Haze_22735 Corylus avellana HOM05D005865 ORTHO05D006867 1.3e-66 258.1 215 63.3
SMO364G0210 Selaginella moellendorffii HOM05D005865 ORTHO05D006867 1.7e-61 241.1 228 53.5
BcaC07g42576 Brassica carinata HOM05D005865 ORTHO05D006867 5.5e-60 236.1 254 51.6
SEGI_14934 Sequoiadendron giganteum HOM05D005865 ORTHO05D006867 5.9e-54 216.1 187 58.8
CBR_g81579 Chara braunii HOM05D005865 ORTHO05D006867 2.3e-50 204.1 457 33.3
Cpa.g.sc26.237 Carica papaya HOM05D005865 ORTHO05D006867 3.9e-42 176.8 238 45.8
MELO3C035627.2 Cucumis melo HOM05D005865 ORTHO05D006867 4.1e-39 166.8 133 68.4
FAN15G0850 Fragaria x ananassa HOM05D005865 ORTHO05D006867 2.0e-38 164.5 209 45.5
PRCOL_00003715 Prasinoderma coloniale HOM05D005865 ORTHO05D006867 4.7e-35 153.3 488 28.1
Cpa.g.sc26.238 Carica papaya HOM05D005865 ORTHO05D006867 1.0e-34 152.1 93 75.3
MCO16G112 Micromonas commoda HOM05D005865 ORTHO05D006867 1.2e-33 148.7 233 36.5
A07p15690 Brassica napus HOM05D005865 ORTHO05D006867 1.5e-28 131.7 183 44.8
MD15G1004800 Malus domestica HOM05D005865 ORTHO05D006867 5.5e-28 129.8 100 65.0
Oeu025004.1 Olea europaea HOM05D005865 ORTHO05D006867 5.2e-26 123.2 175 40.0
SHI04100 Sapria himalayana HOM05D005865 ORTHO05D006867 1.3e-24 118.6 223 39.5
MELO3C032646.2 Cucumis melo HOM05D005865 ORTHO05D006867 4.1e-23 113.6 65 87.7
Rhsim11G0079600 Rhododendron simsii HOM05D005865 ORTHO05D006867 4.1e-23 113.6 104 55.8
SEGI_13350 Sequoiadendron giganteum HOM05D005865 ORTHO05D006867 5.4e-23 113.2 136 46.3
MELO3C035121.2 Cucumis melo HOM05D005865 ORTHO05D000044 3.8e-21 107.1 65 86.2
Hma1.2p1_1100F.1_g257120 Hydrangea macrophylla HOM05D005865 ORTHO05D006867 9.5e-20 102.4 222 34.7
Cpa.g.sc26.239 Carica papaya HOM05D005865 ORTHO05D006867 9.8e-17 92.4 48 87.5
FAN20G0402 Fragaria x ananassa HOM05D005865 ORTHO05D006867 1.1e-15 89.0 128 40.6
MELO3C031410.2 Cucumis melo HOM05D005865 ORTHO05D006867 5.9e-14 83.2 108 48.1
BcaB03g14322 Brassica carinata HOM05D005865 ORTHO05D006867 1.0e-13 82.4 113 43.4
EL10Ac1g02029 Beta vulgaris HOM05D056011 ORTHO05D006867 1.1e-12 79.0 45 75.6
Cre12.g506900 Chlamydomonas reinhardtii HOM05D005865 ORTHO05D006867 6.1e-11 73.2 298 23.2
Rhsim09G0051200 Rhododendron simsii HOM05D005337 ORTHO05D006567 6.1e-11 73.2 123 35.0


User provided reference genes

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