Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C016968.2 Cucumis melo HOM05D004632 ORTHO05D005556 9.3e-271 936.8 675 100.0
CsaV3_4G036640 Cucumis sativus L. HOM05D004632 ORTHO05D005556 3.4e-265 918.3 675 98.4
ClCG05G016370 Citrullus lanatus HOM05D004632 ORTHO05D005556 9.4e-247 857.1 682 94.6
Sed0004025 Sechium edule HOM05D004632 ORTHO05D005556 4.6e-246 854.7 673 94.1
Dinv34967 Davidia involucrata HOM05D004632 ORTHO05D005556 7.0e-210 734.6 672 83.9
GSVIVG01035887001 Vitis vinifera HOM05D004632 ORTHO05D005556 1.9e-207 726.5 675 83.4
Prupe.1G392800 Prunus persica HOM05D004632 ORTHO05D005556 2.8e-206 722.6 673 83.2
Rhsim02G0214000 Rhododendron simsii HOM05D004632 ORTHO05D005556 6.6e-200 701.4 670 81.6
CiPaw.07G229300 Carya illinoinensis HOM05D004632 ORTHO05D005556 8.6e-200 701.0 678 81.6
Potri.018G020200 Populus trichocarpa HOM05D004632 ORTHO05D005556 4.3e-199 698.7 674 81.0
CSS0008139 Camellia sinensis var. sinensis HOM05D004632 ORTHO05D005556 5.6e-199 698.4 670 81.9
Phvul.009G087600 Phaseolus vulgaris HOM05D004632 ORTHO05D005556 7.3e-199 698.0 672 81.7
Potri.006G263400 Populus trichocarpa HOM05D004632 ORTHO05D005556 9.5e-199 697.6 674 80.6
Lalb_Chr23g0268241 Lupinus albus HOM05D004632 ORTHO05D005556 4.7e-198 695.3 670 82.1
RcHm_v2.0_Chr6g0299541 Rosa chinensis HOM05D004632 ORTHO05D005556 1.0e-197 694.1 670 81.9
VMungo1309G0882 Vigna mungo HOM05D004632 ORTHO05D005556 1.4e-197 693.7 671 81.4
Manes.16G128700 Manihot esculenta HOM05D004632 ORTHO05D005556 1.8e-197 693.3 669 81.9
Sabra06G0205900 Salix brachista HOM05D004632 ORTHO05D005556 1.3e-195 687.2 670 80.4
arahy.Tifrunner.gnm1.ann1.8PBG0P Arachis hypogaea HOM05D004632 ORTHO05D005556 3.7e-195 685.6 670 81.3
Glyma.06G062300 Glycine max HOM05D004632 ORTHO05D005556 6.4e-195 684.9 670 80.6
Ciclev10007613m.g Citrus clementina HOM05D004632 ORTHO05D005556 1.9e-194 683.3 673 81.7
Glyma.04G061600 Glycine max HOM05D004632 ORTHO05D005556 7.0e-194 681.4 672 80.8
TPR.G1835 Trifolium pratense HOM05D004632 ORTHO05D005556 9.2e-194 681.0 671 80.8
arahy.Tifrunner.gnm1.ann1.21LKMJ Arachis hypogaea HOM05D004632 ORTHO05D005556 2.0e-193 679.9 458 75.3
MD00G1143300 Malus domestica HOM05D004632 ORTHO05D005556 6.0e-193 678.3 462 75.1
Ca_15774_v3 Cicer arietinum L. HOM05D004632 ORTHO05D005556 1.0e-192 677.6 671 80.0
TWI32G0830 Tripterygium wilfordii HOM05D004632 ORTHO05D005556 2.3e-192 676.4 675 79.9
Atru.chr7.2537 Acer truncatum HOM05D004632 ORTHO05D005556 5.0e-192 675.2 679 80.0
FAN20G0152 Fragaria x ananassa HOM05D004632 ORTHO05D005556 5.0e-192 675.2 685 79.3
Medtr3g106080 Medicago truncatula HOM05D004632 ORTHO05D005556 6.6e-192 674.9 671 80.0
Lj1g0022186 Lotus japonicus HOM05D004632 ORTHO05D005556 1.1e-191 674.1 670 80.3
FAN20G1191 Fragaria x ananassa HOM05D004632 ORTHO05D005556 2.5e-191 672.9 686 79.3
Cc09_g08590 Coffea canephora HOM05D004632 ORTHO05D005556 5.6e-191 671.8 673 80.2
FvH4_2g41020 Fragaria vesca HOM05D004632 ORTHO05D005556 7.3e-191 671.4 671 80.5
Duzib168G2284 Durio zibethinus HOM05D004632 ORTHO05D005556 3.6e-190 669.1 668 81.1
Psat5g032640 Pisum sativum HOM05D004632 ORTHO05D005556 1.1e-189 667.5 670 79.1
Actinidia22297 Actinidia chinensis HOM05D004632 ORTHO05D005556 3.1e-189 666.0 669 80.0
Nn8g39852 Nelumbo nucifera HOM05D004632 ORTHO05D005556 8.9e-189 664.5 669 78.8
PSO782G2171 Papaver somniferum HOM05D004632 ORTHO05D005556 1.5e-188 663.7 671 79.0
Aqoxy7G03810 Aquilegia oxysepala HOM05D004632 ORTHO05D005556 5.8e-188 661.8 671 79.6
Cpa.g.sc127.22 Carica papaya HOM05D004632 ORTHO05D005556 5.8e-188 661.8 461 73.8
FAN27G1200 Fragaria x ananassa HOM05D004632 ORTHO05D005556 6.4e-187 658.3 459 74.3
HanXRQChr03g0084861 Helianthus annuus HOM05D004632 ORTHO05D005556 1.4e-186 657.1 666 78.4
Peaxi162Scf00430g00519 Petunia axillaris HOM05D004632 ORTHO05D005556 2.4e-186 656.4 673 78.6
CAN.G199.61 Capsicum annuum HOM05D004632 ORTHO05D005556 7.1e-186 654.8 673 78.3
PSO063G4867 Papaver somniferum HOM05D004632 ORTHO05D005556 7.1e-186 654.8 672 78.4
MBI15_g05236_MAGBIO Magnolia biondii HOM05D004632 ORTHO05D005556 2.1e-185 653.3 458 73.6
ECA240G3507 Erigeron canadensis HOM05D004632 ORTHO05D005556 8.6e-184 647.9 659 78.6
PGR042G1415 Punica granatum HOM05D004632 ORTHO05D005556 2.1e-182 643.3 675 78.7
Lsat_1_v5_gn_6_77900 Lactuca sativa HOM05D004632 ORTHO05D005556 3.6e-182 642.5 680 77.4
DCAR_015265 Daucus carota HOM05D004632 ORTHO05D005556 1.1e-181 641.0 682 77.3
EL10Ac1g00704 Beta vulgaris HOM05D004632 ORTHO05D005556 1.4e-181 640.6 678 75.2
MSTRG.9370 Avicennia marina HOM05D004632 ORTHO05D005556 4.0e-181 639.0 672 76.6
Sopen06g024220 Solanum pennellii HOM05D004632 ORTHO05D005556 1.2e-180 637.5 678 77.1
Solyc06g065700.3 Solanum lycopersicum HOM05D004632 ORTHO05D005556 2.0e-180 636.7 678 76.8
BcaB04g19812 Brassica carinata HOM05D004632 ORTHO05D005556 2.2e-179 633.3 675 77.0
Gohir.A05G058900 Gossypium hirsutum HOM05D004632 ORTHO05D005556 4.1e-178 629.0 668 78.4
Lj7A732T26 Lonicera japonica HOM05D004632 ORTHO05D005556 4.1e-178 629.0 659 74.2
BolC9t53613H Brassica oleracea HOM05D004632 ORTHO05D005556 2.1e-177 626.7 673 77.0
Eucgr.C02661 Eucalyptus grandis HOM05D004632 ORTHO05D005556 2.1e-177 626.7 689 76.1
BraA09t36273Z Brassica rapa HOM05D004632 ORTHO05D005556 6.0e-177 625.2 673 77.1
A09p06280 Brassica napus HOM05D004632 ORTHO05D005556 7.8e-177 624.8 673 77.1
Lsat_1_v5_gn_7_4261 Lactuca sativa HOM05D004632 ORTHO05D005556 7.8e-177 624.8 462 70.3
THA.LOC104814991 Tarenaya hassleriana HOM05D004632 ORTHO05D005556 3.0e-176 622.9 679 77.3
C09p06950 Brassica napus HOM05D004632 ORTHO05D005556 3.3e-175 619.4 673 76.5
BcaC04g23574 Brassica carinata HOM05D004632 ORTHO05D005556 1.6e-174 617.1 673 76.4
Migut.N00603 Erythranthe guttata HOM05D004632 ORTHO05D005556 4.7e-174 615.5 670 75.5
ATR0739G094 Amborella trichopoda HOM05D004632 ORTHO05D005556 1.5e-172 610.5 673 75.3
Gorai.001G037500 Gossypium raimondii HOM05D004632 ORTHO05D005556 3.4e-172 609.4 667 77.5
Gohir.A07G031900 Gossypium hirsutum HOM05D004632 ORTHO05D005556 1.3e-171 607.4 668 77.2
Ah.05g177560 Amaranthus hybridus HOM05D004632 ORTHO05D005556 2.9e-171 606.3 474 67.3
BolC2t12041H Brassica oleracea HOM05D004632 ORTHO05D005556 1.1e-170 604.4 676 75.1
Gohir.D07G035600 Gossypium hirsutum HOM05D004632 ORTHO05D005556 1.1e-170 604.4 668 76.9
SGA_v2.0_scaffold40G15680 Striga asiatica HOM05D004632 ORTHO05D005556 8.7e-168 594.7 708 71.6
AT5G25150 Arabidopsis thaliana HOM05D004632 ORTHO05D005556 4.3e-167 592.4 675 75.9
C02p59830 Brassica napus HOM05D004632 ORTHO05D005556 9.6e-167 591.3 676 74.4
Sp2g22380 Schrenkiella parvula HOM05D004632 ORTHO05D005556 1.3e-166 590.9 675 75.3
Thhalv10003767m.g Eutrema salsugineum HOM05D004632 ORTHO05D005556 4.0e-165 585.9 676 75.3
Carub.0006s2297 Capsella rubella HOM05D004632 ORTHO05D005556 1.5e-164 583.9 675 75.3
CDE05G3472 Ceratophyllum demersum HOM05D004632 ORTHO05D005556 1.5e-164 583.9 669 64.0
HPP92_014401 Vanilla planifolia HOM05D004632 ORTHO05D005556 7.6e-164 581.6 670 74.3
Thecc.09G016800 Theobroma cacao HOM05D004632 ORTHO05D005556 1.7e-163 580.5 571 85.3
Os06g0649500 Oryza sativa ssp. japonica HOM05D004632 ORTHO05D005556 2.2e-163 580.1 669 74.6
VMungo0647G2075 Vigna mungo HOM05D004632 ORTHO05D005556 6.4e-163 578.6 670 73.6
CARHR188340 Cardamine hirsuta HOM05D004632 ORTHO05D005556 1.6e-161 573.9 456 66.2
Phvul.001G042300 Phaseolus vulgaris HOM05D004632 ORTHO05D005556 1.6e-161 573.9 670 73.4
CSS0046974 Camellia sinensis var. sinensis HOM05D004632 ORTHO05D005556 3.5e-161 572.8 617 78.0
A02p39940 Brassica napus HOM05D004632 ORTHO05D005556 7.9e-161 571.6 674 73.0
BraA02t08956Z Brassica rapa HOM05D004632 ORTHO05D005556 1.0e-160 571.2 674 73.0
MSTRG.4644 Avicennia marina HOM05D004632 ORTHO05D005556 2.5e-159 566.6 671 72.6
Glyma.17G222200 Glycine max HOM05D004632 ORTHO05D005556 2.5e-159 566.6 670 73.0
Nitab4.5_0007182g0050 Nicotiana tabacum HOM05D004632 ORTHO05D005556 4.8e-158 562.4 457 65.9
Aa31LG11G4400 Aethionema arabicum HOM05D004632 ORTHO05D005556 1.8e-157 560.5 463 63.7
Nitab4.5_0003976g0020 Nicotiana tabacum HOM05D004632 ORTHO05D005556 7.6e-156 555.1 728 65.9
vmacro11252 Vaccinium macrocarpon HOM05D004632 ORTHO05D005556 7.6e-156 555.1 602 62.6
Haze_21427 Corylus avellana HOM05D004632 ORTHO05D005556 1.3e-155 554.3 463 66.1
AUR62023356 Chenopodium quinoa HOM05D004632 ORTHO05D005556 7.1e-154 548.5 670 69.0
AUR62013801 Chenopodium quinoa HOM05D004632 ORTHO05D005556 2.1e-153 547.0 612 73.0
Hund27424 Selenicereus undatus HOM05D004632 ORTHO05D005556 2.7e-153 546.6 588 54.1
TAR626G1191 Trochodendron aralioides HOM05D004632 ORTHO05D005556 6.2e-150 535.4 566 82.0
BcaB07g29936 Brassica carinata HOM05D004632 ORTHO05D005556 8.1e-150 535.0 452 61.7
AL6G36810 Arabidopsis lyrata HOM05D004632 ORTHO05D005556 1.1e-146 524.6 442 64.5
SalBow1G2567 Salvia bowleyana HOM05D004632 ORTHO05D005556 1.2e-145 521.2 386 69.7
Zm00001eb388650 Zea mays HOM05D004632 ORTHO05D005556 2.0e-140 503.8 573 78.5
BcaC03g17924 Brassica carinata HOM05D004632 ORTHO05D005556 1.5e-135 487.6 676 68.8
TAR625G0176 Trochodendron aralioides HOM05D004632 ORTHO05D005556 2.6e-127 460.3 356 68.8
Oeu061252.3 Olea europaea HOM05D004632 ORTHO05D005556 1.1e-125 454.9 708 64.4
Gohir.D05G060932 Gossypium hirsutum HOM05D004632 ORTHO05D005556 1.0e-123 448.4 630 59.4
Mapoly0009s0169 Marchantia polymorpha HOM05D004632 ORTHO05D005556 1.1e-122 444.9 685 63.8
Pp3c12_23330 Physcomitrium patens HOM05D004632 ORTHO05D005556 3.2e-122 443.4 468 53.0
MD15G1039100 Malus domestica HOM05D004632 ORTHO05D005556 8.8e-120 435.3 318 71.4
SMO118G0104 Selaginella moellendorffii HOM05D004632 ORTHO05D005556 9.1e-109 398.7 401 52.1
Oeu013659.1 Olea europaea HOM05D004632 ORTHO05D005556 1.7e-107 394.4 279 71.3
CSS0042581 Camellia sinensis var. sinensis HOM05D004632 ORTHO05D005556 2.9e-107 393.7 293 73.4
Actinidia13189 Actinidia chinensis HOM05D004632 ORTHO05D005556 2.8e-89 334.0 672 59.5
Sed0017212 Sechium edule HOM05D004632 ORTHO05D005556 4.7e-81 306.6 582 55.8
COL.COLO4_18941 Corchorus olitorius HOM05D004632 ORTHO05D005556 1.7e-70 271.6 389 46.3
PRCOL_00000651 Prasinoderma coloniale HOM05D004632 ORTHO05D005556 2.5e-66 257.7 464 36.2
Zm00001eb259920 Zea mays HOM05D004632 ORTHO05D005556 9.5e-66 255.8 194 68.0
MD15G1039000 Malus domestica HOM05D004632 ORTHO05D005556 1.8e-56 224.9 149 76.5
MCO11G306 Micromonas commoda HOM05D004632 ORTHO05D005556 5.2e-56 223.4 475 31.8
SEGI_13945 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 4.2e-53 213.8 166 63.9
Manes.03G009801 Manihot esculenta HOM05D004632 ORTHO05D005556 5.4e-53 213.4 401 40.9
Dinv40981 Davidia involucrata HOM05D004632 ORTHO05D005556 3.5e-52 210.7 279 50.9
CDE05G1210 Ceratophyllum demersum HOM05D004632 ORTHO05D005556 2.3e-51 208.0 143 72.7
MCO11G293 Micromonas commoda HOM05D004632 ORTHO05D005556 3.9e-51 207.2 524 29.4
CBR_g41144 Chara braunii HOM05D004632 ORTHO05D005556 6.6e-51 206.5 193 50.3
VMungo1309G1582 Vigna mungo HOM05D004632 ORTHO05D005556 6.6e-51 206.5 195 60.5
SEGI_28232 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 6.4e-46 189.9 160 64.4
CDE05G3588 Ceratophyllum demersum HOM05D004632 ORTHO05D005556 3.4e-39 167.5 130 62.3
AagrBONN_evm.TU.Sc2ySwM_228.3176 Anthoceros agrestis HOM05D003428 ORTHO05D004131 4.9e-38 163.7 147 54.4
CBR_g39739 Chara braunii HOM05D004632 ORTHO05D005556 3.2e-37 161.0 292 37.7
Actinidia10511 Actinidia chinensis HOM05D004632 ORTHO05D005556 2.1e-36 158.3 142 59.9
PSO541G0014 Papaver somniferum HOM05D004632 ORTHO05D005556 3.0e-35 154.5 116 68.1
Hma1.2p1_0059F.1_g032640 Hydrangea macrophylla HOM05D004632 ORTHO05D005556 5.3e-32 143.7 293 88.7
Sabra18G0022500 Salix brachista HOM05D004632 ORTHO05D005556 3.4e-23 114.4 290 35.5
Cre12.g526950 Chlamydomonas reinhardtii HOM05D004632 ORTHO05D005556 3.2e-21 107.8 514 23.7
Actinidia09762 Actinidia chinensis HOM05D004632 ORTHO05D005556 2.1e-20 105.1 66 74.2
Glyma.14G103500 Glycine max HOM05D004632 ORTHO05D005556 6.1e-20 103.6 110 54.5
Actinidia10512 Actinidia chinensis HOM05D004632 ORTHO05D005556 6.7e-19 100.1 87 59.8
SEGI_30848 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 6.7e-19 100.1 75 61.3
SEGI_29407 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 5.0e-14 84.0 54 66.7
Cfa022837 Carpinus fangiana HOM05D004632 ORTHO05D005556 1.4e-13 82.4 502 22.3
MD15G1038900 Malus domestica HOM05D004632 ORTHO05D005556 4.2e-13 80.9 54 75.9
FAN15G3250 Fragaria x ananassa HOM05D004632 ORTHO05D005556 1.6e-12 79.0 47 83.0
Haze_26425 Corylus avellana HOM05D004632 ORTHO05D005556 8.8e-11 73.2 178 30.9
SEGI_21073 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 2.4e-08 65.1 54 66.7
Glyma.14G103600 Glycine max HOM05D004632 ORTHO05D005556 4.1e-08 64.3 49 71.4
Dinv40325 Davidia involucrata HOM05D004632 ORTHO05D005556 1.2e-07 62.8 37 78.4


User provided reference genes

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