Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C016756.2 Cucumis melo HOM05D004452 ORTHO05D005358 0.0e+00 1586.2 819 100.0
CsaV3_4G034360 Cucumis sativus L. HOM05D004452 ORTHO05D005358 0.0e+00 1538.9 819 97.3
ClCG05G019920 Citrullus lanatus HOM05D004452 ORTHO05D005358 0.0e+00 1506.5 819 94.0
Sed0009272 Sechium edule HOM05D004452 ORTHO05D005358 0.0e+00 1421.8 821 89.0
GSVIVG01009484001 Vitis vinifera HOM05D004452 ORTHO05D005358 0.0e+00 1080.9 779 69.2
QL02p004676 Quercus lobata HOM05D004452 ORTHO05D005358 1.1e-311 1072.8 791 69.2
CiPaw.15G055600 Carya illinoinensis HOM05D004452 ORTHO05D005358 8.0e-309 1063.5 818 66.4
Duzib093G1704 Durio zibethinus HOM05D004452 ORTHO05D005358 8.0e-309 1063.5 816 66.2
Thecc.08G005800 Theobroma cacao HOM05D004452 ORTHO05D005358 3.4e-307 1058.1 816 66.1
Actinidia23285 Actinidia chinensis HOM05D004452 ORTHO05D005358 2.2e-306 1055.4 818 65.9
Cfa018088 Carpinus fangiana HOM05D004452 ORTHO05D005358 4.8e-306 1054.3 818 65.6
CSS0026728 Camellia sinensis var. sinensis HOM05D004452 ORTHO05D005358 4.1e-305 1051.2 820 66.3
Prupe.1G434400 Prunus persica HOM05D004452 ORTHO05D005358 4.1e-305 1051.2 816 65.4
Manes.18G038000 Manihot esculenta HOM05D004452 ORTHO05D005358 4.5e-304 1047.7 817 66.2
Ciclev10000290m.g Citrus clementina HOM05D004452 ORTHO05D005358 6.1e-301 1037.3 822 64.1
COL.COLO4_26520 Corchorus olitorius HOM05D004452 ORTHO05D005358 6.1e-301 1037.3 816 64.7
TAR381G1434 Trochodendron aralioides HOM05D004452 ORTHO05D005358 1.3e-298 1029.6 808 65.1
vmacro21515 Vaccinium macrocarpon HOM05D004452 ORTHO05D005358 8.3e-298 1026.9 822 64.5
Rhsim06G0050800 Rhododendron simsii HOM05D004452 ORTHO05D005358 1.4e-297 1026.2 833 63.7
MD15G1081700 Malus domestica HOM05D004452 ORTHO05D005358 2.4e-297 1025.4 819 64.7
Nn5g30286 Nelumbo nucifera HOM05D004452 ORTHO05D005358 1.6e-296 1022.7 817 63.9
TWI36G0852 Tripterygium wilfordii HOM05D004452 ORTHO05D005358 5.9e-296 1020.8 819 66.1
RcHm_v2.0_Chr6g0308041 Rosa chinensis HOM05D004452 ORTHO05D005358 1.3e-295 1019.6 819 64.3
Dinv39307 Davidia involucrata HOM05D004452 ORTHO05D005358 2.9e-295 1018.5 818 64.4
FvH4_2g34320 Fragaria vesca HOM05D004452 ORTHO05D005358 2.9e-295 1018.5 817 64.9
FAN15G1326 Fragaria x ananassa HOM05D004452 ORTHO05D005358 5.0e-295 1017.7 817 65.1
Gohir.D05G206300 Gossypium hirsutum HOM05D004452 ORTHO05D005358 5.0e-295 1017.7 817 64.0
TWI56G0235 Tripterygium wilfordii HOM05D004452 ORTHO05D005358 8.6e-295 1016.9 818 65.9
Atru.chr13.704 Acer truncatum HOM05D004452 ORTHO05D005358 9.5e-294 1013.4 822 64.1
FAN20G1510 Fragaria x ananassa HOM05D004452 ORTHO05D005358 1.2e-293 1013.1 819 65.6
Gorai.009G212700 Gossypium raimondii HOM05D004452 ORTHO05D005358 3.1e-292 1008.4 817 63.6
FAN27G2914 Fragaria x ananassa HOM05D004452 ORTHO05D005358 6.8e-292 1007.3 817 64.6
Potri.014G028100 Populus trichocarpa HOM05D004452 ORTHO05D005358 2.2e-290 1002.3 817 62.9
FAN24G0195 Fragaria x ananassa HOM05D004452 ORTHO05D005358 4.9e-290 1001.1 866 61.5
Sabra14G0019200 Salix brachista HOM05D004452 ORTHO05D005358 4.9e-290 1001.1 817 62.7
PGR031G1897 Punica granatum HOM05D004452 ORTHO05D005358 1.2e-285 986.5 816 63.2
CANSAT11G1000 Cannabis sativa HOM05D004452 ORTHO05D005358 8.0e-285 983.8 819 63.9
Lj4A59T44 Lonicera japonica HOM05D004452 ORTHO05D005358 1.8e-284 982.6 804 62.9
PSO170G2588 Papaver somniferum HOM05D004452 ORTHO05D005358 6.8e-284 980.7 815 62.9
Cpa.g.sc49.27 Carica papaya HOM05D004452 ORTHO05D005358 3.4e-283 978.4 818 63.9
Cc10_g04060 Coffea canephora HOM05D004452 ORTHO05D005358 4.9e-282 974.5 807 61.3
PSO210G0441 Papaver somniferum HOM05D004452 ORTHO05D005358 8.3e-282 973.8 815 62.6
CAN.G1030.10 Capsicum annuum HOM05D004452 ORTHO05D005358 1.3e-279 966.5 806 63.4
MBI06_g02568_MAGBIO Magnolia biondii HOM05D004452 ORTHO05D005358 3.3e-278 961.8 800 61.6
Aqoxy5G01224 Aquilegia oxysepala HOM05D004452 ORTHO05D005358 5.6e-278 961.1 806 61.0
Sc15g0006090 Simmondsia chinensis HOM05D004452 ORTHO05D005358 3.6e-277 958.4 820 60.1
PGSC0003DMG400007967 Solanum tuberosum HOM05D004452 ORTHO05D005358 4.7e-277 958.0 791 63.5
Lalb_Chr11g0062611 Lupinus albus HOM05D004452 ORTHO05D005358 8.9e-276 953.7 829 60.7
Nitab4.5_0002760g0030 Nicotiana tabacum HOM05D004452 ORTHO05D005358 8.9e-276 953.7 805 63.0
Nitab4.5_0000287g0200 Nicotiana tabacum HOM05D004452 ORTHO05D005358 1.2e-275 953.4 805 63.0
THA.LOC104822853 Tarenaya hassleriana HOM05D004452 ORTHO05D005358 8.3e-274 947.2 828 60.1
Eucgr.F02336 Eucalyptus grandis HOM05D004452 ORTHO05D005358 1.4e-273 946.4 820 61.8
Oeu043579.4 Olea europaea HOM05D004452 ORTHO05D005358 9.2e-273 943.7 808 59.0
Solyc04g078830.3 Solanum lycopersicum HOM05D004452 ORTHO05D005358 4.6e-272 941.4 792 62.8
Lj1g0004160 Lotus japonicus HOM05D004452 ORTHO05D005358 7.8e-272 940.6 825 60.2
Glyma.06G040600 Glycine max HOM05D004452 ORTHO05D005358 8.6e-271 937.2 824 60.4
Migut.N02714 Erythranthe guttata HOM05D004452 ORTHO05D005358 2.8e-269 932.2 806 60.9
Hma1.2p1_2046F.1_g312410 Hydrangea macrophylla HOM05D004452 ORTHO05D005358 2.8e-269 932.2 845 59.8
Glyma.04G039400 Glycine max HOM05D004452 ORTHO05D005358 3.6e-269 931.8 818 60.9
arahy.Tifrunner.gnm1.ann1.UAD7VL Arachis hypogaea HOM05D004452 ORTHO05D005358 4.7e-269 931.4 824 61.0
DCAR_019448 Daucus carota HOM05D004452 ORTHO05D005358 3.1e-268 928.7 797 62.4
Ca_15944_v3 Cicer arietinum L. HOM05D004452 ORTHO05D005358 4.0e-268 928.3 821 59.6
TPR.G24198 Trifolium pratense HOM05D004452 ORTHO05D005358 2.0e-267 926.0 793 60.9
Phvul.009G065600 Phaseolus vulgaris HOM05D004452 ORTHO05D005358 3.4e-267 925.2 816 60.8
arahy.Tifrunner.gnm1.ann1.Y5ZCTQ Arachis hypogaea HOM05D004452 ORTHO05D005358 4.4e-267 924.9 824 61.0
AUR62041892 Chenopodium quinoa HOM05D004452 ORTHO05D005358 3.8e-266 921.8 791 61.9
MSTRG.24335 Avicennia marina HOM05D004452 ORTHO05D005358 1.1e-265 920.2 805 59.9
Medtr3g101790 Medicago truncatula HOM05D004452 ORTHO05D005358 1.1e-265 920.2 821 59.1
Gohir.A05G203100 Gossypium hirsutum HOM05D004452 ORTHO05D005358 1.6e-264 916.4 730 64.2
VMungo1309G1308 Vigna mungo HOM05D004452 ORTHO05D005358 2.7e-264 915.6 822 60.3
Hund23866 Selenicereus undatus HOM05D004452 ORTHO05D005358 2.5e-262 909.1 807 59.2
Carub.0008s0587 Capsella rubella HOM05D004452 ORTHO05D005358 7.3e-262 907.5 829 58.7
AT5G42920 Arabidopsis thaliana HOM05D004452 ORTHO05D005358 8.1e-261 904.0 828 58.6
Thhalv10003147m.g Eutrema salsugineum HOM05D004452 ORTHO05D005358 2.4e-260 902.5 826 58.8
CARHR181170 Cardamine hirsuta HOM05D004452 ORTHO05D005358 1.3e-258 896.7 827 58.6
AL8G17930 Arabidopsis lyrata HOM05D004452 ORTHO05D005358 2.9e-258 895.6 826 58.6
Peaxi162Scf00252g00221 Petunia axillaris HOM05D004452 ORTHO05D005358 4.9e-258 894.8 806 59.4
Aa31LG9G12980 Aethionema arabicum HOM05D004452 ORTHO05D005358 1.1e-257 893.6 826 58.0
Lsat_1_v5_gn_1_21181 Lactuca sativa HOM05D004452 ORTHO05D005358 2.4e-257 892.5 806 58.9
HanXRQChr02g0039511 Helianthus annuus HOM05D004452 ORTHO05D005358 9.3e-257 890.6 801 60.7
Psat5g042600 Pisum sativum HOM05D004452 ORTHO05D005358 2.1e-256 889.4 797 59.0
SGA_v2.0_scaffold28G11777 Striga asiatica HOM05D004452 ORTHO05D005358 4.6e-256 888.3 795 59.5
Sp2g07660 Schrenkiella parvula HOM05D004452 ORTHO05D005358 2.3e-255 885.9 826 57.7
EL10Ac1g01836 Beta vulgaris HOM05D004452 ORTHO05D005358 6.6e-255 884.4 808 59.8
BcaC06g31738 Brassica carinata HOM05D004452 ORTHO05D005358 1.5e-254 883.2 826 57.1
ECA247G0253 Erigeron canadensis HOM05D004452 ORTHO05D005358 1.1e-252 877.1 803 58.7
BcaC02g10792 Brassica carinata HOM05D004452 ORTHO05D005358 4.5e-251 871.7 831 57.6
C04p25060 Brassica napus HOM05D004452 ORTHO05D005358 4.5e-251 871.7 831 57.6
BolC4t24007H Brassica oleracea HOM05D004452 ORTHO05D005358 4.5e-251 871.7 831 57.6
A06p48170 Brassica napus HOM05D004452 ORTHO05D005358 1.2e-248 863.6 827 57.1
BraA06t27686Z Brassica rapa HOM05D004452 ORTHO05D005358 6.0e-248 861.3 827 57.2
ATR1126G044 Amborella trichopoda HOM05D004452 ORTHO05D005358 6.5e-242 841.3 802 55.5
CDE08G0013 Ceratophyllum demersum HOM05D004452 ORTHO05D005358 9.3e-233 810.8 818 54.0
SHI08268 Sapria himalayana HOM05D004452 ORTHO05D005358 3.4e-227 792.3 825 53.0
Dinv35952 Davidia involucrata HOM05D004452 ORTHO05D005358 1.4e-223 780.4 621 66.7
Zm00001eb255990 Zea mays HOM05D004452 ORTHO05D005358 1.7e-213 746.9 815 53.4
SalBow8G3632 Salvia bowleyana HOM05D004452 ORTHO05D005358 3.8e-202 709.1 650 58.2
SalBow8G0374 Salvia bowleyana HOM05D004452 ORTHO05D005358 8.5e-202 708.0 650 58.2
CDE04G2017 Ceratophyllum demersum HOM05D004452 ORTHO05D005358 4.9e-189 665.6 637 56.8
Sed0026470 Sechium edule HOM05D004452 ORTHO05D005358 5.9e-187 658.7 478 76.4
CiPaw.16G042900 Carya illinoinensis HOM05D004452 ORTHO05D005358 1.3e-181 641.0 486 68.7
Mapoly0012s0112 Marchantia polymorpha HOM05D004452 ORTHO05D005358 6.6e-178 628.6 843 46.9
Sopen04g032430 Solanum pennellii HOM05D004452 ORTHO05D005358 4.1e-172 609.4 567 56.6
CANSAT11G0118 Cannabis sativa HOM05D004452 ORTHO05D005358 1.5e-169 600.9 478 65.9
Lalb_Chr08g0245391 Lupinus albus HOM05D004452 ORTHO05D005358 2.8e-168 596.7 460 68.0
Sc02g0007190 Simmondsia chinensis HOM05D004452 ORTHO05D005358 1.7e-162 577.4 474 65.2
Phvul.001G022500 Phaseolus vulgaris HOM05D004452 ORTHO05D005358 5.1e-162 575.9 463 64.8
Glyma.17G241800 Glycine max HOM05D004452 ORTHO05D005358 3.3e-161 573.2 463 63.9
THA.LOC104812571 Tarenaya hassleriana HOM05D004452 ORTHO05D005358 9.5e-161 571.6 491 64.8
Glyma.14G083300 Glycine max HOM05D004452 ORTHO05D005358 2.1e-160 570.5 463 64.1
VMungo0647G1811 Vigna mungo HOM05D004452 ORTHO05D005358 9.2e-156 555.1 482 61.2
AUR62038817 Chenopodium quinoa HOM05D004452 ORTHO05D005358 7.3e-153 545.4 507 55.4
arahy.Tifrunner.gnm1.ann1.IXK305 Arachis hypogaea HOM05D004452 ORTHO05D005358 1.6e-152 544.3 490 58.4
arahy.Tifrunner.gnm1.ann1.VB8FSW Arachis hypogaea HOM05D004452 ORTHO05D005358 1.6e-152 544.3 490 58.4
Oeu023860.1 Olea europaea HOM05D004452 ORTHO05D005358 2.4e-151 540.4 461 61.6
Sp1g34090 Schrenkiella parvula HOM05D004452 ORTHO05D005358 6.8e-151 538.9 458 61.1
Thhalv10011479m.g Eutrema salsugineum HOM05D004452 ORTHO05D005358 2.9e-149 533.5 459 61.2
HPP92_016717 Vanilla planifolia HOM05D004452 ORTHO05D005358 1.7e-146 524.2 742 43.0
AT1G45233 Arabidopsis thaliana HOM05D004452 ORTHO05D005358 3.9e-146 523.1 461 59.9
Os02g0767100 Oryza sativa ssp. japonica HOM05D004452 ORTHO05D005358 3.3e-145 520.0 477 58.3
AL1G52910 Arabidopsis lyrata HOM05D004452 ORTHO05D005358 4.8e-144 516.2 460 58.0
Carub.0001s3568 Capsella rubella HOM05D004452 ORTHO05D005358 6.2e-144 515.8 461 58.6
CARHR036370 Cardamine hirsuta HOM05D004452 ORTHO05D005358 2.3e-138 497.3 456 58.3
SMO356G0003 Selaginella moellendorffii HOM05D004452 ORTHO05D005358 2.3e-138 497.3 712 44.2
A10p06900 Brassica napus HOM05D004452 ORTHO05D005358 9.6e-137 491.9 452 56.6
BraA10t42942Z Brassica rapa HOM05D004452 ORTHO05D005358 8.1e-136 488.8 451 57.0
MSTRG.25087 Avicennia marina HOM05D004452 ORTHO05D005358 1.1e-135 488.4 412 61.9
Aa31sc108G100 Aethionema arabicum HOM05D004452 ORTHO05D005358 9.0e-135 485.3 461 57.5
BolC6t35279H Brassica oleracea HOM05D004452 ORTHO05D005358 1.8e-130 471.1 451 55.7
BcaC08g42910 Brassica carinata HOM05D004452 ORTHO05D005358 5.1e-130 469.5 451 55.9
AagrBONN_evm.TU.Sc2ySwM_228.4151 Anthoceros agrestis HOM05D004452 ORTHO05D005358 8.7e-130 468.8 723 41.4
C06p01470 Brassica napus HOM05D004452 ORTHO05D005358 1.1e-129 468.4 451 55.7
unitig_749.g13678 Utricularia gibba HOM05D004452 ORTHO05D005358 1.5e-126 458.0 694 41.2
Pp3c7_25670 Physcomitrium patens HOM05D004452 ORTHO05D005358 3.4e-126 456.8 757 39.9
unitig_26.g10021 Utricularia gibba HOM05D002518 ORTHO05D002630 3.0e-122 443.7 467 55.5
BcaB07g33871 Brassica carinata HOM05D004452 ORTHO05D005358 6.5e-117 426.0 460 51.1
Nn7g37344 Nelumbo nucifera HOM05D004452 ORTHO05D005358 1.1e-113 415.2 296 73.3
SEGI_30975 Sequoiadendron giganteum HOM05D004452 ORTHO05D005358 4.7e-99 366.7 312 63.8
Potri.002G125300 Populus trichocarpa HOM05D004452 ORTHO05D005358 7.9e-99 365.9 653 39.1
AagrBONN_evm.TU.Sc2ySwM_117.2784 Anthoceros agrestis HOM05D004452 ORTHO05D005358 2.2e-93 347.8 465 43.7
TAR625G1031 Trochodendron aralioides HOM05D004452 ORTHO05D005358 6.3e-88 329.7 277 66.1
Nn3g17073 Nelumbo nucifera HOM05D004452 ORTHO05D005358 1.4e-82 312.0 222 75.7
MD08G1099200 Malus domestica HOM05D004452 ORTHO05D005358 2.9e-77 294.3 197 77.7
CBR_g24409 Chara braunii HOM05D004452 ORTHO05D005358 7.8e-62 243.0 358 40.5
MCO13G423 Micromonas commoda HOM05D004452 ORTHO05D005358 3.5e-54 217.6 795 28.6
SalBow8G2832 Salvia bowleyana HOM05D004452 ORTHO05D005358 3.5e-54 217.6 160 68.8
SalBow8G5418 Salvia bowleyana HOM05D004452 ORTHO05D005358 3.5e-54 217.6 160 68.8
SEGI_02411 Sequoiadendron giganteum HOM05D004452 ORTHO05D000001 6.0e-54 216.9 358 38.8
Dinv35953 Davidia involucrata HOM05D004452 ORTHO05D005358 4.7e-51 207.2 140 70.0
MD08G1099300 Malus domestica HOM05D004452 ORTHO05D005358 6.2e-51 206.8 147 66.7
MD08G1099500 Malus domestica HOM05D004452 ORTHO05D005358 4.4e-49 200.7 138 71.0
Cre17.g705550 Chlamydomonas reinhardtii HOM05D004452 ORTHO05D005358 7.1e-47 193.4 446 31.4
Aa31LG7G10550 Aethionema arabicum HOM05D004452 ORTHO05D005358 8.1e-27 126.7 88 65.9
Nn3g18530 Nelumbo nucifera HOM05D004452 ORTHO05D005358 1.4e-26 125.9 155 41.9
Nn3g18532 Nelumbo nucifera HOM05D004452 ORTHO05D005358 1.2e-25 122.9 155 40.6
Aa31LG7G10540 Aethionema arabicum HOM05D004452 ORTHO05D005358 2.8e-19 101.7 98 61.2
TAR625G1460 Trochodendron aralioides HOM05D004452 ORTHO05D005358 3.4e-17 94.7 95 42.1
Actinidia22636 Actinidia chinensis HOM05D004452 ORTHO05D005358 2.2e-16 92.0 70 58.6
CARHR174670 Cardamine hirsuta HOM05D004452 ORTHO05D005358 4.0e-10 71.2 54 63.0
PRCOL_00004305 Prasinoderma coloniale HOM05D004452 ORTHO05D005358 9.0e-10 70.1 230 26.5
MD08G1099400 Malus domestica HOM05D031194 ORTHO05D029699 3.2e-07 61.6 69 43.5


User provided reference genes

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