Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C016751.2 Cucumis melo HOM05D004883 ORTHO05D005766 2.9e-67 258.5 133 100.0
CsaV3_4G034310 Cucumis sativus L. HOM05D004883 ORTHO05D005766 1.6e-57 226.1 133 88.7
ClCG05G019880 Citrullus lanatus HOM05D004883 ORTHO05D005766 9.7e-55 216.9 133 84.2
Sed0005554 Sechium edule HOM05D004883 ORTHO05D005766 1.9e-50 202.6 133 77.4
arahy.Tifrunner.gnm1.ann1.09A9GY Arachis hypogaea HOM05D004883 ORTHO05D005766 1.4e-48 196.4 130 73.1
arahy.Tifrunner.gnm1.ann1.B0E7W8 Arachis hypogaea HOM05D004883 ORTHO05D005766 1.4e-48 196.4 130 73.1
Haze_17525 Corylus avellana HOM05D004883 ORTHO05D005766 1.4e-48 196.4 133 73.7
PGR031G0707 Punica granatum HOM05D004883 ORTHO05D005766 1.4e-48 196.4 125 76.8
Glyma.14G082800 Glycine max HOM05D004883 ORTHO05D005766 3.0e-48 195.3 133 71.4
Ah.09g236860 Amaranthus hybridus HOM05D004883 ORTHO05D005766 1.5e-47 193.0 129 73.6
Cpa.g.sc49.21 Carica papaya HOM05D004883 ORTHO05D005766 2.0e-47 192.6 127 72.4
Lj5g0012185 Lotus japonicus HOM05D004883 ORTHO05D005766 2.6e-47 192.2 133 68.4
Glyma.17G242300 Glycine max HOM05D004883 ORTHO05D005766 3.3e-47 191.8 133 71.4
Phvul.001G022000 Phaseolus vulgaris HOM05D004883 ORTHO05D005766 3.3e-47 191.8 133 70.7
Psat1g147680 Pisum sativum HOM05D004883 ORTHO05D005766 4.4e-47 191.4 133 71.4
QL02p004805 Quercus lobata HOM05D004883 ORTHO05D005766 4.4e-47 191.4 129 70.5
Lalb_Chr22g0355131 Lupinus albus HOM05D004883 ORTHO05D005766 1.3e-46 189.9 133 70.7
Prupe.1G435500 Prunus persica HOM05D004883 ORTHO05D005766 1.3e-46 189.9 129 69.8
TPR.G3781 Trifolium pratense HOM05D004883 ORTHO05D005766 1.3e-46 189.9 133 70.7
VMungo0647G0758 Vigna mungo HOM05D004883 ORTHO05D005766 1.3e-46 189.9 133 71.4
GSVIVG01009495001 Vitis vinifera HOM05D004883 ORTHO05D005766 1.3e-46 189.9 133 70.7
AUR62012534 Chenopodium quinoa HOM05D004883 ORTHO05D005766 1.7e-46 189.5 129 72.1
Atru.chr13.693 Acer truncatum HOM05D004883 ORTHO05D005766 2.2e-46 189.1 133 70.7
CiPaw.16G043800 Carya illinoinensis HOM05D004883 ORTHO05D005766 3.7e-46 188.3 129 71.3
Rhsim07G0228400 Rhododendron simsii HOM05D004883 ORTHO05D005766 3.7e-46 188.3 133 71.4
AUR62014661 Chenopodium quinoa HOM05D004883 ORTHO05D005766 4.8e-46 188.0 129 71.3
AUR62044174 Chenopodium quinoa HOM05D004883 ORTHO05D005766 4.8e-46 188.0 129 71.3
EL10Ac8g19960 Beta vulgaris HOM05D004883 ORTHO05D005766 6.3e-46 187.6 129 72.9
Dinv35960 Davidia involucrata HOM05D004883 ORTHO05D005766 8.2e-46 187.2 133 68.4
Ca_13291_v3 Cicer arietinum L. HOM05D004883 ORTHO05D005766 1.1e-45 186.8 133 67.7
FvH4_2g34441 Fragaria vesca HOM05D004883 ORTHO05D005766 1.4e-45 186.4 129 72.1
Hund21302 Selenicereus undatus HOM05D004883 ORTHO05D005766 1.4e-45 186.4 128 71.1
Sc02g0007090 Simmondsia chinensis HOM05D004883 ORTHO05D005766 1.4e-45 186.4 130 71.5
MD08G1101600 Malus domestica HOM05D004883 ORTHO05D005766 1.8e-45 186.0 130 70.0
vmacro04449 Vaccinium macrocarpon HOM05D004883 ORTHO05D005766 1.8e-45 186.0 130 69.2
Ciclev10002854m.g Citrus clementina HOM05D004883 ORTHO05D005766 2.4e-45 185.7 130 67.7
FAN20G2534 Fragaria x ananassa HOM05D004883 ORTHO05D005766 3.1e-45 185.3 129 71.3
FAN27G2225 Fragaria x ananassa HOM05D004883 ORTHO05D005766 4.1e-45 184.9 128 71.1
TAR381G1103 Trochodendron aralioides HOM05D004883 ORTHO05D005766 4.1e-45 184.9 130 69.2
Hma1.2p1_0982F.1_g244010 Hydrangea macrophylla HOM05D004883 ORTHO05D005766 5.3e-45 184.5 129 68.2
COL.COLO4_26509 Corchorus olitorius HOM05D004883 ORTHO05D005766 2.0e-44 182.6 129 69.0
MD15G1083000 Malus domestica HOM05D004883 ORTHO05D005766 2.6e-44 182.2 130 67.7
Sopen04g032520 Solanum pennellii HOM05D004883 ORTHO05D005766 5.9e-44 181.0 129 69.0
AT5G42890 Arabidopsis thaliana HOM05D004883 ORTHO05D005766 7.7e-44 180.6 129 65.9
MSTRG.1348 Avicennia marina HOM05D004883 ORTHO05D005766 7.7e-44 180.6 130 68.5
PGSC0003DMG400007973 Solanum tuberosum HOM05D004883 ORTHO05D005766 7.7e-44 180.6 129 69.0
Medtr1g019430 Medicago truncatula HOM05D004883 ORTHO05D005766 1.0e-43 180.3 133 66.9
RcHm_v2.0_Chr6g0307931 Rosa chinensis HOM05D004883 ORTHO05D005766 1.0e-43 180.3 129 69.8
THA.LOC104822849 Tarenaya hassleriana HOM05D004883 ORTHO05D005766 1.0e-43 180.3 127 67.7
BcaB07g31037 Brassica carinata HOM05D004883 ORTHO05D005766 1.3e-43 179.9 129 65.9
Thhalv10003291m.g Eutrema salsugineum HOM05D004883 ORTHO05D005766 1.3e-43 179.9 129 65.9
Gorai.009G211700 Gossypium raimondii HOM05D004883 ORTHO05D005766 1.3e-43 179.9 129 67.4
Actinidia38058 Actinidia chinensis HOM05D004883 ORTHO05D005766 1.7e-43 179.5 130 66.9
ECA232G2590 Erigeron canadensis HOM05D004883 ORTHO05D005766 1.7e-43 179.5 130 66.9
Gohir.D05G205400 Gossypium hirsutum HOM05D004883 ORTHO05D005766 1.7e-43 179.5 129 67.4
Nn1g04858 Nelumbo nucifera HOM05D004883 ORTHO05D005766 1.7e-43 179.5 130 69.2
Solyc04g078920.3 Solanum lycopersicum HOM05D004883 ORTHO05D005766 1.7e-43 179.5 129 68.2
Thecc.08G007300 Theobroma cacao HOM05D004883 ORTHO05D005766 1.7e-43 179.5 129 67.4
BcaC04g21964 Brassica carinata HOM05D004883 ORTHO05D005766 2.2e-43 179.1 129 65.9
A09p20040 Brassica napus HOM05D004883 ORTHO05D005766 2.2e-43 179.1 129 65.9
C09p25420 Brassica napus HOM05D004883 ORTHO05D005766 2.2e-43 179.1 129 65.9
BolC9t55441H Brassica oleracea HOM05D004883 ORTHO05D005766 2.2e-43 179.1 129 65.9
BraA09t37617Z Brassica rapa HOM05D004883 ORTHO05D005766 2.2e-43 179.1 129 65.9
Eucgr.F02346 Eucalyptus grandis HOM05D004883 ORTHO05D005766 2.2e-43 179.1 163 57.7
AL8G18060 Arabidopsis lyrata HOM05D004883 ORTHO05D005766 2.9e-43 178.7 129 65.1
Sp2g07620 Schrenkiella parvula HOM05D004883 ORTHO05D005766 2.9e-43 178.7 129 65.9
DCAR_020929 Daucus carota HOM05D004883 ORTHO05D005766 3.8e-43 178.3 129 68.2
BcaC06g31741 Brassica carinata HOM05D004883 ORTHO05D005766 5.0e-43 177.9 129 65.1
Lsat_1_v5_gn_4_125820 Lactuca sativa HOM05D004883 ORTHO05D005766 5.0e-43 177.9 129 65.9
Gohir.D01G108200 Gossypium hirsutum HOM05D004883 ORTHO05D005766 6.5e-43 177.6 126 67.5
Gorai.002G132400 Gossypium raimondii HOM05D004883 ORTHO05D005766 6.5e-43 177.6 127 67.7
Carub.0008s0602 Capsella rubella HOM05D004883 ORTHO05D005766 8.5e-43 177.2 129 64.3
CSS0025959 Camellia sinensis var. sinensis HOM05D004883 ORTHO05D005766 1.1e-42 176.8 130 66.9
CSS0031938 Camellia sinensis var. sinensis HOM05D004883 ORTHO05D005766 1.1e-42 176.8 130 66.9
Gohir.A01G119900 Gossypium hirsutum HOM05D004883 ORTHO05D005766 1.9e-42 176.0 129 65.9
ATR1102G009 Amborella trichopoda HOM05D004883 ORTHO05D005766 2.5e-42 175.6 128 68.0
Migut.N02708 Erythranthe guttata HOM05D004883 ORTHO05D005766 2.5e-42 175.6 130 64.6
HanXRQChr05g0150871 Helianthus annuus HOM05D004883 ORTHO05D005766 2.5e-42 175.6 129 65.1
Cc10_g04160 Coffea canephora HOM05D004883 ORTHO05D005766 3.2e-42 175.3 134 67.2
HanXRQChr14g0439621 Helianthus annuus HOM05D004883 ORTHO05D005766 4.2e-42 174.9 129 63.6
Oeu057282.1 Olea europaea HOM05D004883 ORTHO05D005766 5.5e-42 174.5 133 64.7
Os06g0211300 Oryza sativa ssp. japonica HOM05D004883 ORTHO05D005766 5.5e-42 174.5 127 70.1
Gohir.D06G016900 Gossypium hirsutum HOM05D004883 ORTHO05D005766 9.4e-42 173.7 127 66.1
Gorai.010G019800 Gossypium raimondii HOM05D004883 ORTHO05D005766 9.4e-42 173.7 127 66.1
THA.LOC104814168 Tarenaya hassleriana HOM05D004883 ORTHO05D005766 9.4e-42 173.7 127 65.4
Peaxi162Scf00010g00308 Petunia axillaris HOM05D004883 ORTHO05D005766 1.6e-41 172.9 129 65.9
Lsat_1_v5_gn_6_112040 Lactuca sativa HOM05D004883 ORTHO05D005766 2.7e-41 172.2 128 64.1
Oeu044836.1 Olea europaea HOM05D004883 ORTHO05D005766 2.7e-41 172.2 133 63.9
DCAR_012777 Daucus carota HOM05D004883 ORTHO05D005766 3.6e-41 171.8 127 66.1
Aa31LG9G12950 Aethionema arabicum HOM05D004883 ORTHO05D005766 4.7e-41 171.4 127 65.4
Aqoxy5G01236 Aquilegia oxysepala HOM05D004883 ORTHO05D005766 4.7e-41 171.4 130 66.2
Duzib093G0126 Durio zibethinus HOM05D004883 ORTHO05D005766 6.1e-41 171.0 116 69.8
FvH4_2g34440 Fragaria vesca HOM05D004883 ORTHO05D005766 6.1e-41 171.0 129 67.4
SalBow7G2082 Salvia bowleyana HOM05D004883 ORTHO05D005766 6.1e-41 171.0 127 64.6
CARHR181250 Cardamine hirsuta HOM05D004883 ORTHO05D005766 1.4e-40 169.9 129 62.0
Migut.C00579 Erythranthe guttata HOM05D004883 ORTHO05D005766 1.4e-40 169.9 133 63.9
SalBow3G1199 Salvia bowleyana HOM05D004883 ORTHO05D005766 2.3e-40 169.1 128 64.1
CDE08G1634 Ceratophyllum demersum HOM05D004883 ORTHO05D005766 3.0e-40 168.7 125 67.2
Potri.002G126200 Populus trichocarpa HOM05D004883 ORTHO05D005766 5.2e-40 167.9 129 65.1
TWI36G0538 Tripterygium wilfordii HOM05D004883 ORTHO05D005766 5.2e-40 167.9 130 64.6
PSO210G0389 Papaver somniferum HOM05D004883 ORTHO05D005766 1.1e-39 166.8 129 62.8
Gohir.A05G202300 Gossypium hirsutum HOM05D004883 ORTHO05D005766 1.5e-39 166.4 115 68.7
PSO170G5588 Papaver somniferum HOM05D004883 ORTHO05D005766 1.5e-39 166.4 129 62.8
Manes.05G174000 Manihot esculenta HOM05D004883 ORTHO05D005766 2.6e-39 165.6 127 63.0
Hund23571 Selenicereus undatus HOM05D004883 ORTHO05D005766 2.6e-39 165.6 129 63.6
Sabra02G0098900 Salix brachista HOM05D004883 ORTHO05D005766 1.3e-38 163.3 129 62.8
Os02g0765800 Oryza sativa ssp. japonica HOM05D004883 ORTHO05D005766 2.8e-38 162.2 127 64.6
ECA246G2602 Erigeron canadensis HOM05D004883 ORTHO05D005766 1.4e-37 159.8 130 59.2
TWI56G0859 Tripterygium wilfordii HOM05D004883 ORTHO05D005766 1.4e-37 159.8 130 62.3
TWI56G0476 Tripterygium wilfordii HOM05D004883 ORTHO05D005766 3.1e-37 158.7 130 62.3
SEGI_37934 Sequoiadendron giganteum HOM05D004883 ORTHO05D005766 7.0e-37 157.5 129 60.5
Duzib041G0234 Durio zibethinus HOM05D004883 ORTHO05D005766 1.2e-36 156.8 129 62.0
Potri.014G029300 Populus trichocarpa HOM05D004883 ORTHO05D005766 2.0e-36 156.0 125 63.2
Sabra14G0020100 Salix brachista HOM05D004883 ORTHO05D005766 7.7e-36 154.1 125 62.4
CSS0006435 Camellia sinensis var. sinensis HOM05D004883 ORTHO05D005766 1.0e-35 153.7 129 60.5
SMO169G0122 Selaginella moellendorffii HOM05D004883 ORTHO05D005766 2.9e-35 152.1 133 58.6
Nitab4.5_0000287g0320 Nicotiana tabacum HOM05D004883 ORTHO05D005766 3.8e-35 151.8 133 60.9
Nitab4.5_0003118g0020 Nicotiana tabacum HOM05D004883 ORTHO05D005766 3.8e-35 151.8 133 60.9
MBI06_g02552_MAGBIO Magnolia biondii HOM05D004883 ORTHO05D005766 1.5e-34 149.8 129 61.2
Pp3c24_4700 Physcomitrium patens HOM05D004883 ORTHO05D005766 5.5e-34 147.9 130 57.7
HPP92_013338 Vanilla planifolia HOM05D004883 ORTHO05D005766 1.2e-33 146.7 127 63.0
MD00G1215600 Malus domestica HOM05D004883 ORTHO05D005766 1.6e-33 146.4 110 64.5
Mapoly0033s0053 Marchantia polymorpha HOM05D004883 ORTHO05D005766 1.6e-33 146.4 130 56.9
Manes.18G037300 Manihot esculenta HOM05D004883 ORTHO05D005766 1.8e-32 142.9 127 54.3
C03p39670 Brassica napus HOM05D004883 ORTHO05D005766 6.8e-32 141.0 113 61.1
BcaC09g50201 Brassica carinata HOM05D004883 ORTHO05D005766 1.7e-30 136.3 116 58.6
FAN15G1199 Fragaria x ananassa HOM05D004883 ORTHO05D005766 7.0e-29 131.0 89 71.9
TAR625G0321 Trochodendron aralioides HOM05D004883 ORTHO05D005766 2.0e-28 129.4 102 60.8
CANSAT35G0766 Cannabis sativa HOM05D004883 ORTHO05D005766 1.3e-27 126.7 126 49.2
AagrBONN_evm.TU.Sc2ySwM_344.1976 Anthoceros agrestis HOM05D004883 ORTHO05D005766 2.3e-24 115.9 130 48.5
Peaxi162Scf00252g00711 Petunia axillaris HOM05D004883 ORTHO05D005766 6.8e-24 114.4 133 49.6
CAN.G1139.16 Capsicum annuum HOM05D004883 ORTHO05D005766 3.4e-23 112.1 100 59.0
EL10Ac4g09184 Beta vulgaris HOM05D004883 ORTHO05D005766 1.3e-22 110.2 124 51.6
CAN.G371.3 Capsicum annuum HOM05D004883 ORTHO05D005766 2.8e-22 109.0 133 47.4
Nn5g30317 Nelumbo nucifera HOM05D004883 ORTHO05D005766 8.3e-22 107.5 130 50.0
EL10Ac7g17187 Beta vulgaris HOM05D004883 ORTHO05D005766 1.4e-21 106.7 89 61.8
Actinidia29871 Actinidia chinensis HOM05D004883 ORTHO05D005766 3.1e-21 105.5 69 68.1
BolC9t59992H Brassica oleracea HOM05D004883 ORTHO05D005766 1.2e-20 103.6 106 52.8
BcaC01g04518 Brassica carinata HOM05D004883 ORTHO05D005766 5.9e-20 101.3 88 59.1
Os01g0357200 Oryza sativa ssp. japonica HOM05D004883 ORTHO05D005766 1.7e-19 99.8 91 59.3
Gohir.A06G018633 Gossypium hirsutum HOM05D004883 ORTHO05D005766 2.3e-19 99.4 100 52.0
Lj4A58G20 Lonicera japonica HOM05D000983 ORTHO05D005766 2.9e-19 99.0 60 71.7
BolC1t02723H Brassica oleracea HOM05D004883 ORTHO05D005766 1.6e-17 93.2 73 60.3
RcHm_v2.0_Chr5g0032801 Rosa chinensis HOM05D004883 ORTHO05D005766 4.9e-14 81.6 91 54.9
C01p27920 Brassica napus HOM05D004883 ORTHO05D005766 5.9e-12 74.7 109 40.4
unitig_32.g11126 Utricularia gibba HOM05D004883 ORTHO05D005766 2.9e-11 72.4 58 56.9
MELO3C033382.2 Cucumis melo HOM05D004883 ORTHO05D005766 3.9e-11 72.0 39 87.2
Cre14.g633550 Chlamydomonas reinhardtii HOM05D004883 ORTHO05D005766 1.9e-10 69.7 115 34.8
C09p72490 Brassica napus HOM05D004883 ORTHO05D005766 2.8e-09 65.9 43 65.1
PRCOL_00003255 Prasinoderma coloniale HOM05D004883 ORTHO05D005766 1.8e-08 63.2 115 35.7
Haze_26844 Corylus avellana HOM05D005792 ORTHO05D007171 8.9e-08 60.8 117 38.5


User provided reference genes

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