Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C016656.2 Cucumis melo HOM05D006178 ORTHO05D007504 7.4e-197 690.3 328 100.0
CsaV3_5G015780 Cucumis sativus L. HOM05D006178 ORTHO05D007504 1.6e-175 619.4 328 91.2
ClCG09G011820 Citrullus lanatus HOM05D006178 ORTHO05D007504 8.5e-161 570.5 304 90.5
QL03p035908 Quercus lobata HOM05D006178 ORTHO05D007504 8.6e-129 464.2 345 64.9
TWI74G1561 Tripterygium wilfordii HOM05D006178 ORTHO05D007504 2.5e-128 462.6 318 67.3
CiPaw.05G188700 Carya illinoinensis HOM05D006178 ORTHO05D007504 4.3e-128 461.8 328 67.1
Psat6g046400 Pisum sativum HOM05D006178 ORTHO05D007504 2.1e-127 459.5 320 66.2
MD13G1020300 Malus domestica HOM05D006178 ORTHO05D007504 2.8e-127 459.1 328 67.1
Atru.chr11.922 Acer truncatum HOM05D006178 ORTHO05D007504 1.8e-126 456.4 323 65.9
Duzib251G0568 Durio zibethinus HOM05D006178 ORTHO05D007504 2.0e-125 453.0 323 67.2
FvH4_4g33550 Fragaria vesca HOM05D006178 ORTHO05D007504 5.8e-125 451.4 328 67.1
Lj2g0017740 Lotus japonicus HOM05D006178 ORTHO05D007504 7.5e-125 451.1 320 65.3
Prupe.1G333400 Prunus persica HOM05D006178 ORTHO05D007504 9.8e-125 450.7 330 66.1
GSVIVG01011660001 Vitis vinifera HOM05D006178 ORTHO05D007504 1.3e-124 450.3 323 65.6
Glyma.02G085100 Glycine max HOM05D006178 ORTHO05D007504 2.9e-124 449.1 321 66.0
Ca_12542_v3 Cicer arietinum L. HOM05D006178 ORTHO05D007504 3.7e-124 448.7 323 65.6
FAN07G2930 Fragaria x ananassa HOM05D006178 ORTHO05D007504 4.9e-124 448.4 328 66.2
Eucgr.B02675 Eucalyptus grandis HOM05D006178 ORTHO05D007504 1.1e-123 447.2 321 65.1
Medtr1g032430 Medicago truncatula HOM05D006178 ORTHO05D007504 1.9e-123 446.4 316 64.9
Thecc.02G292800 Theobroma cacao HOM05D006178 ORTHO05D007504 3.2e-123 445.7 321 65.4
TPR.G36937 Trifolium pratense HOM05D006178 ORTHO05D007504 7.0e-123 444.5 317 65.3
FAN12G1191 Fragaria x ananassa HOM05D006178 ORTHO05D007504 2.7e-122 442.6 340 64.7
FAN22G2090 Fragaria x ananassa HOM05D006178 ORTHO05D007504 4.6e-122 441.8 340 64.7
Actinidia38440 Actinidia chinensis HOM05D006178 ORTHO05D007504 8.6e-121 437.6 316 65.2
Potri.010G106400 Populus trichocarpa HOM05D006178 ORTHO05D007504 1.1e-120 437.2 325 65.2
Hma1.2p1_0277F.1_g111690 Hydrangea macrophylla HOM05D006178 ORTHO05D007504 1.5e-120 436.8 325 63.4
COL.COLO4_16591 Corchorus olitorius HOM05D006178 ORTHO05D007504 2.5e-120 436.0 303 66.3
FAN17G1905 Fragaria x ananassa HOM05D006178 ORTHO05D007504 3.3e-120 435.6 339 63.4
Gorai.002G172000 Gossypium raimondii HOM05D006178 ORTHO05D007504 2.1e-119 433.0 323 64.1
Gohir.D01G139900 Gossypium hirsutum HOM05D006178 ORTHO05D007504 1.8e-118 429.9 323 63.8
Ciclev10015964m.g Citrus clementina HOM05D006178 ORTHO05D007504 3.1e-118 429.1 325 63.7
PGSC0003DMG400028747 Solanum tuberosum HOM05D006178 ORTHO05D007504 3.1e-118 429.1 311 63.7
Gohir.A01G146700 Gossypium hirsutum HOM05D006178 ORTHO05D007504 5.2e-118 428.3 323 63.5
Lalb_Chr17g0338441 Lupinus albus HOM05D006178 ORTHO05D007504 8.9e-118 427.6 305 66.2
Cpa.g.sc2.193 Carica papaya HOM05D006178 ORTHO05D007504 5.8e-117 424.9 324 63.0
arahy.Tifrunner.gnm1.ann1.56CUD8 Arachis hypogaea HOM05D006178 ORTHO05D007504 4.9e-116 421.8 320 62.2
arahy.Tifrunner.gnm1.ann1.M99K8C Arachis hypogaea HOM05D006178 ORTHO05D007504 8.3e-116 421.0 320 61.9
DCAR_007330 Daucus carota HOM05D006178 ORTHO05D007504 8.3e-116 421.0 299 65.9
Sopen07g004780 Solanum pennellii HOM05D006178 ORTHO05D007504 4.1e-115 418.7 328 61.0
THA.LOC104821906 Tarenaya hassleriana HOM05D006178 ORTHO05D007504 5.4e-115 418.3 325 62.2
Lj6C738G3 Lonicera japonica HOM05D001486 ORTHO05D007504 9.2e-115 417.5 286 66.8
Sed0021590 Sechium edule HOM05D006178 ORTHO05D007504 3.5e-114 415.6 234 80.8
Solyc07g008850.3 Solanum lycopersicum HOM05D006178 ORTHO05D007504 4.6e-114 415.2 326 60.4
CAN.G511.14 Capsicum annuum HOM05D006178 ORTHO05D007504 6.0e-114 414.8 324 60.5
Thhalv10007963m.g Eutrema salsugineum HOM05D006178 ORTHO05D007504 2.3e-113 412.9 312 62.8
Manes.15G134200 Manihot esculenta HOM05D006178 ORTHO05D007504 6.6e-113 411.4 325 62.2
Sc04g0008610 Simmondsia chinensis HOM05D006178 ORTHO05D007504 6.6e-113 411.4 321 62.3
EL10Ac2g02672 Beta vulgaris HOM05D006178 ORTHO05D007504 9.5e-112 407.5 316 60.8
Ah.02g128010 Amaranthus hybridus HOM05D006178 ORTHO05D007504 1.2e-111 407.1 319 60.8
SalBow2G2905 Salvia bowleyana HOM05D006178 ORTHO05D007504 5.2e-110 401.7 327 57.8
Hund24927 Selenicereus undatus HOM05D006178 ORTHO05D007504 2.0e-109 399.8 403 51.4
Oeu044010.1 Olea europaea HOM05D006178 ORTHO05D007504 3.4e-109 399.1 302 62.9
Cc11_g07280 Coffea canephora HOM05D006178 ORTHO05D007504 7.6e-109 397.9 316 59.2
AL1G40190 Arabidopsis lyrata HOM05D006178 ORTHO05D007504 2.9e-108 396.0 317 60.3
Phvul.003G019200 Phaseolus vulgaris HOM05D006178 ORTHO05D007504 2.9e-108 396.0 317 60.6
Sp1g23080 Schrenkiella parvula HOM05D006178 ORTHO05D007504 2.9e-108 396.0 315 60.6
AT1G24793 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 3.7e-108 395.6 323 59.1
AT1G25054 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 3.7e-108 395.6 323 59.1
AT1G25145 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 3.7e-108 395.6 323 59.1
AT1G25210 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 3.7e-108 395.6 323 59.1
Migut.E00482 Erythranthe guttata HOM05D006178 ORTHO05D007504 4.9e-108 395.2 319 59.9
AUR62014248 Chenopodium quinoa HOM05D006178 ORTHO05D007504 6.4e-108 394.8 296 62.2
Carub.0001s2539 Capsella rubella HOM05D006178 ORTHO05D007504 8.4e-108 394.4 312 60.3
AUR62038473 Chenopodium quinoa HOM05D006178 ORTHO05D007504 2.4e-107 392.9 296 61.5
PSO478G4000 Papaver somniferum HOM05D006178 ORTHO05D007504 2.4e-107 392.9 314 58.9
PSO017G4246 Papaver somniferum HOM05D006178 ORTHO05D007504 9.2e-107 391.0 314 58.3
Lsat_1_v5_gn_3_53481 Lactuca sativa HOM05D006178 ORTHO05D007504 1.6e-106 390.2 295 63.1
HanXRQChr15g0476731 Helianthus annuus HOM05D006178 ORTHO05D007504 2.7e-106 389.4 324 58.3
BcaC01g01670 Brassica carinata HOM05D006178 ORTHO05D007504 3.5e-106 389.0 333 57.7
C03p73180 Brassica napus HOM05D006178 ORTHO05D007504 8.6e-105 384.4 335 57.3
BolC3t19616H Brassica oleracea HOM05D006178 ORTHO05D007504 8.6e-105 384.4 335 57.3
Aa31LG7G9330 Aethionema arabicum HOM05D006178 ORTHO05D007504 1.1e-104 384.0 321 57.6
A08p26780 Brassica napus HOM05D006178 ORTHO05D007504 2.8e-103 379.4 312 59.0
ECA246G2474 Erigeron canadensis HOM05D006178 ORTHO05D007504 1.1e-102 377.5 320 58.1
Peaxi162Scf00937g00336 Petunia axillaris HOM05D006178 ORTHO05D007504 1.1e-102 377.5 290 60.7
BraA08t34624Z Brassica rapa HOM05D006178 ORTHO05D007504 2.6e-101 372.9 319 57.1
BcaB03g12042 Brassica carinata HOM05D006178 ORTHO05D007504 4.4e-101 372.1 302 59.6
Haze_10879 Corylus avellana HOM05D006178 ORTHO05D007504 5.4e-99 365.2 249 68.7
Dinv07729 Davidia involucrata HOM05D006178 ORTHO05D007504 2.1e-98 363.2 251 66.9
MBI13_g29562_MAGBIO Magnolia biondii HOM05D006178 ORTHO05D007504 2.5e-96 356.3 326 55.8
vmacro00552 Vaccinium macrocarpon HOM05D006178 ORTHO05D007504 2.0e-93 346.7 319 55.8
Aqoxy3G00007 Aquilegia oxysepala HOM05D006178 ORTHO05D007504 9.9e-93 344.4 326 55.2
CANSAT01G0234 Cannabis sativa HOM05D006178 ORTHO05D007504 5.1e-89 332.0 254 62.6
Os03g0223900 Oryza sativa ssp. japonica HOM05D006178 ORTHO05D007504 5.1e-89 332.0 316 52.2
Sabra10G0077800 Salix brachista HOM05D006178 ORTHO05D007504 4.3e-88 328.9 261 61.3
ATR0753G153 Amborella trichopoda HOM05D006178 ORTHO05D007504 5.3e-86 322.0 285 54.7
Zm00001eb009130 Zea mays HOM05D006178 ORTHO05D007504 6.4e-84 315.1 319 50.5
RcHm_v2.0_Chr7g0235121 Rosa chinensis HOM05D006178 ORTHO05D007504 7.4e-80 301.6 222 64.9
HPP92_013128 Vanilla planifolia HOM05D006178 ORTHO05D007504 3.7e-79 299.3 294 52.7
SGA_v2.0_scaffold23G10206 Striga asiatica HOM05D006178 ORTHO05D007504 6.2e-79 298.5 293 52.2
Mapoly0012s0127 Marchantia polymorpha HOM05D006178 ORTHO05D007504 1.1e-75 287.7 311 47.9
Nitab4.5_0000018g0160 Nicotiana tabacum HOM05D006178 ORTHO05D007504 2.7e-74 283.1 216 61.1
Pp3c3_1850 Physcomitrium patens HOM05D006178 ORTHO05D007504 6.0e-74 282.0 320 45.9
unitig_22.g5599 Utricularia gibba HOM05D000369 ORTHO05D000253 2.4e-70 270.0 328 47.9
Nitab4.5_0009975g0010 Nicotiana tabacum HOM05D006178 ORTHO05D007504 2.2e-68 263.5 240 54.2
Gohir.D08G117400 Gossypium hirsutum HOM05D006178 ORTHO05D007504 2.5e-67 260.0 193 62.2
Gohir.D10G193800 Gossypium hirsutum HOM05D006178 ORTHO05D007504 3.2e-67 259.6 192 62.5
CSS0005024 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 9.3e-67 258.1 192 63.5
Gorai.001G151600 Gossypium raimondii HOM05D006178 ORTHO05D007504 1.2e-66 257.7 192 61.5
Gohir.D13G135551 Gossypium hirsutum HOM05D006178 ORTHO05D007504 2.7e-66 256.5 193 61.7
Gohir.D07G139600 Gossypium hirsutum HOM05D006178 ORTHO05D007504 4.6e-66 255.8 192 61.5
CSS0001732 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 7.9e-66 255.0 184 64.1
Gorai.010G050600 Gossypium raimondii HOM05D006178 ORTHO05D007504 7.9e-66 255.0 192 61.5
HPP92_013158 Vanilla planifolia HOM05D006178 ORTHO05D007504 3.4e-61 239.6 219 53.4
CDE05G0668 Ceratophyllum demersum HOM05D006178 ORTHO05D007504 4.5e-61 239.2 232 52.6
SMO232G0119 Selaginella moellendorffii HOM05D006178 ORTHO05D007504 1.0e-60 238.0 297 44.1
CBR_g12524 Chara braunii HOM05D006178 ORTHO05D007504 5.0e-60 235.7 398 36.9
TAR629G3300 Trochodendron aralioides HOM05D006178 ORTHO05D007504 4.4e-56 222.6 188 58.0
Gohir.D11G251901 Gossypium hirsutum HOM05D006178 ORTHO05D007504 9.7e-56 221.5 192 56.2
Gorai.005G149500 Gossypium raimondii HOM05D006178 ORTHO05D007504 5.9e-53 212.2 193 53.4
Gorai.005G145500 Gossypium raimondii HOM05D006178 ORTHO05D007504 1.1e-51 208.0 200 52.5
PRCOL_00001866 Prasinoderma coloniale HOM05D006178 ORTHO05D007504 8.5e-44 181.8 348 34.2
CSS0007559 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 7.2e-43 178.7 106 76.4
CSS0004101 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 1.6e-42 177.6 106 75.5
TAR629G1361 Trochodendron aralioides HOM05D006178 ORTHO05D007504 7.5e-40 168.7 118 65.3
MCO09G291 Micromonas commoda HOM05D006178 ORTHO05D007504 1.3e-39 167.9 303 36.6
Gorai.007G245600 Gossypium raimondii HOM05D006178 ORTHO05D007504 1.2e-37 161.4 123 61.8
Gohir.D11G228700 Gossypium hirsutum HOM05D006178 ORTHO05D007504 1.6e-37 161.0 121 62.8
Gorai.009G391300 Gossypium raimondii HOM05D006178 ORTHO05D007504 7.7e-37 158.7 108 70.4
SEGI_10880 Sequoiadendron giganteum HOM05D006178 ORTHO05D007504 3.8e-36 156.4 183 43.7
CARHR026360 Cardamine hirsuta HOM05D006178 ORTHO05D007504 1.5e-35 154.5 116 64.7
QL03p035827 Quercus lobata HOM05D006178 ORTHO05D007504 1.4e-33 147.9 117 60.7
AagrBONN_evm.TU.Sc2ySwM_340.423 Anthoceros agrestis HOM05D006178 ORTHO05D007504 6.8e-33 145.6 182 43.4
Nn3g18364 Nelumbo nucifera HOM05D006178 ORTHO05D007504 2.7e-29 133.7 110 58.2
Cre16.g653350 Chlamydomonas reinhardtii HOM05D006178 ORTHO05D007504 8.5e-28 128.6 270 33.0
Glyma.13G258800 Glycine max HOM05D006178 ORTHO05D007504 2.8e-23 113.6 77 67.5
Glyma.13G368200 Glycine max HOM05D006178 ORTHO05D007504 2.8e-23 113.6 77 67.5
Nn3g18365 Nelumbo nucifera HOM05D006178 ORTHO05D007504 1.1e-22 111.7 75 66.7
Ca_29306_v3 Cicer arietinum L. HOM05D001616 ORTHO05D007504 9.2e-22 108.6 259 31.7
Sed0025662 Sechium edule HOM05D006178 ORTHO05D007504 4.4e-16 89.7 41 92.7
QL02p029395 Quercus lobata HOM05D002431 ORTHO05D002543 1.7e-07 61.2 34 73.5
Gohir.D08G060150 Gossypium hirsutum HOM05D006178 ORTHO05D007504 2.9e-07 60.5 39 66.7


User provided reference genes

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