Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C016523.2 Cucumis melo HOM05D006220 ORTHO05D007590 4.7e-178 628.6 584 100.0
CsaV3_3G006190 Cucumis sativus L. HOM05D006220 ORTHO05D007590 4.4e-160 568.9 584 92.3
Sed0021838 Sechium edule HOM05D006220 ORTHO05D007590 3.9e-148 529.3 584 89.7
ClCG10G006830 Citrullus lanatus HOM05D006220 ORTHO05D007590 8.7e-132 474.9 538 88.1
Cfa020552 Carpinus fangiana HOM05D006220 ORTHO05D007590 4.0e-113 412.9 584 73.1
Prupe.4G184800 Prunus persica HOM05D006220 ORTHO05D007590 2.9e-111 406.8 583 70.3
Hma1.2p1_0148F.1_g066160 Hydrangea macrophylla HOM05D006220 ORTHO05D007590 8.4e-111 405.2 583 75.5
PGR031G1387 Punica granatum HOM05D006220 ORTHO05D007590 1.1e-110 404.8 581 76.4
RcHm_v2.0_Chr5g0034391 Rosa chinensis HOM05D006220 ORTHO05D007590 5.5e-110 402.5 584 74.5
CSS0010017 Camellia sinensis var. sinensis HOM05D006220 ORTHO05D007590 1.6e-109 401.0 583 75.3
GSVIVG01014371001 Vitis vinifera HOM05D006220 ORTHO05D007590 7.9e-109 398.7 583 74.3
Thecc.07G079000 Theobroma cacao HOM05D006220 ORTHO05D007590 1.8e-108 397.5 583 73.6
HanXRQChr03g0078511 Helianthus annuus HOM05D006220 ORTHO05D007590 3.7e-106 389.8 581 69.9
TWI38G2391 Tripterygium wilfordii HOM05D006220 ORTHO05D007590 2.4e-105 387.1 583 73.9
Gohir.A13G145200 Gossypium hirsutum HOM05D006220 ORTHO05D007590 4.1e-105 386.3 583 71.4
Sp3g13670 Schrenkiella parvula HOM05D006220 ORTHO05D007590 2.0e-104 384.0 585 70.8
Gorai.013G167800 Gossypium raimondii HOM05D006220 ORTHO05D007590 5.8e-104 382.5 583 73.6
COL.COLO4_09426 Corchorus olitorius HOM05D006220 ORTHO05D007590 2.2e-103 380.6 583 73.1
Gohir.D13G150000 Gossypium hirsutum HOM05D006220 ORTHO05D007590 5.0e-103 379.4 583 73.2
THA.LOC104810484 Tarenaya hassleriana HOM05D006220 ORTHO05D007590 6.5e-103 379.0 581 76.6
Hund22942 Selenicereus undatus HOM05D006220 ORTHO05D007590 1.9e-102 377.5 581 71.3
ECA240G2314 Erigeron canadensis HOM05D006220 ORTHO05D007590 5.5e-102 375.9 583 72.2
BcaB06g29573 Brassica carinata HOM05D006220 ORTHO05D007590 6.1e-101 372.5 583 74.3
Thhalv10020366m.g Eutrema salsugineum HOM05D006220 ORTHO05D007590 7.9e-101 372.1 585 74.4
AT3G15410 Arabidopsis thaliana HOM05D006220 ORTHO05D007590 1.6e-98 364.4 583 72.7
BraA05t22221Z Brassica rapa HOM05D006220 ORTHO05D007590 2.8e-98 363.6 589 73.2
AL3G27960 Arabidopsis lyrata HOM05D006220 ORTHO05D007590 4.8e-98 362.8 583 72.2
Carub.0003s1514 Capsella rubella HOM05D006220 ORTHO05D007590 1.5e-96 357.8 583 72.4
Cc05_g12250 Coffea canephora HOM05D006220 ORTHO05D007590 3.4e-96 356.7 583 70.7
Lalb_Chr20g0109761 Lupinus albus HOM05D006220 ORTHO05D007590 1.1e-94 351.7 583 70.7
BolC5t33860H Brassica oleracea HOM05D006220 ORTHO05D007590 1.9e-94 350.9 589 72.3
Eucgr.F03334 Eucalyptus grandis HOM05D006220 ORTHO05D007590 1.6e-93 347.8 581 74.2
Os02g0826600 Oryza sativa ssp. japonica HOM05D006220 ORTHO05D007590 1.6e-93 347.8 583 66.0
Zm00001eb259320 Zea mays HOM05D006220 ORTHO05D007590 6.1e-93 345.9 581 69.2
SGA_v2.0_scaffold9G04934 Striga asiatica HOM05D006220 ORTHO05D007590 1.8e-92 344.4 600 69.2
Manes.03G112900 Manihot esculenta HOM05D006220 ORTHO05D007590 8.8e-92 342.0 583 67.8
CARHR090460 Cardamine hirsuta HOM05D006220 ORTHO05D007590 9.7e-91 338.6 583 71.0
Migut.H01927 Erythranthe guttata HOM05D006220 ORTHO05D007590 1.3e-90 338.2 583 73.8
Ciclev10007835m.g Citrus clementina HOM05D006220 ORTHO05D007590 1.7e-90 337.8 583 73.6
Nitab4.5_0000207g0180 Nicotiana tabacum HOM05D006220 ORTHO05D007590 4.8e-90 336.3 593 61.0
arahy.Tifrunner.gnm1.ann1.LU5I8Y Arachis hypogaea HOM05D006220 ORTHO05D007590 8.2e-90 335.5 589 65.7
A05p33990 Brassica napus HOM05D006220 ORTHO05D007590 1.8e-89 334.3 563 72.5
MD11G1243700 Malus domestica HOM05D006220 ORTHO05D007590 1.8e-89 334.3 586 57.8
Duzib213G0302 Durio zibethinus HOM05D006220 ORTHO05D007590 6.9e-89 332.4 505 72.9
CAN.G1110.52 Capsicum annuum HOM05D006220 ORTHO05D007590 9.1e-89 332.0 583 66.7
HPP92_022050 Vanilla planifolia HOM05D006220 ORTHO05D007590 5.9e-88 329.3 586 65.2
BcaC05g29008 Brassica carinata HOM05D006220 ORTHO05D007590 2.2e-87 327.4 562 73.1
Actinidia05212 Actinidia chinensis HOM05D006220 ORTHO05D007590 5.0e-87 326.2 583 69.0
CANSAT56G4311 Cannabis sativa HOM05D006220 ORTHO05D007590 2.5e-86 323.9 583 65.5
MSTRG.14365 Avicennia marina HOM05D006220 ORTHO05D007590 1.6e-85 321.2 583 69.3
MD00G1090000 Malus domestica HOM05D006220 ORTHO05D007590 1.6e-85 321.2 557 66.6
Solyc10g006930.4 Solanum lycopersicum HOM05D006220 ORTHO05D007590 4.7e-85 319.7 583 65.4
FAN25G1684 Fragaria x ananassa HOM05D006220 ORTHO05D007590 3.0e-84 317.0 585 69.2
AUR62029364 Chenopodium quinoa HOM05D006220 ORTHO05D007590 5.1e-84 316.2 583 50.6
Glyma.13G278800 Glycine max HOM05D006220 ORTHO05D007590 6.7e-84 315.8 583 68.6
DCAR_017149 Daucus carota HOM05D006220 ORTHO05D007590 1.5e-83 314.7 513 71.5
Lsat_1_v5_gn_9_97140 Lactuca sativa HOM05D006220 ORTHO05D007590 2.6e-83 313.9 512 65.4
Sopen10g002840 Solanum pennellii HOM05D006220 ORTHO05D007590 4.4e-83 313.2 583 65.2
Glyma.12G222700 Glycine max HOM05D006220 ORTHO05D007590 5.7e-83 312.8 584 67.0
arahy.Tifrunner.gnm1.ann1.BQ9KJC Arachis hypogaea HOM05D006220 ORTHO05D007590 2.8e-82 310.5 589 64.3
Nitab4.5_0001320g0170 Nicotiana tabacum HOM05D006220 ORTHO05D007590 4.8e-82 309.7 417 63.8
Cpa.g.sc80.40 Carica papaya HOM05D006220 ORTHO05D007590 1.8e-81 307.8 591 62.9
TAR626G0245 Trochodendron aralioides HOM05D006220 ORTHO05D007590 7.0e-81 305.8 564 69.5
AUR62034280 Chenopodium quinoa HOM05D006220 ORTHO05D007590 1.2e-80 305.1 574 55.6
Atru.chr2.2718 Acer truncatum HOM05D006220 ORTHO05D007590 2.0e-80 304.3 583 68.1
Sc16g0006920 Simmondsia chinensis HOM05D006220 ORTHO05D007590 2.2e-79 300.8 512 71.3
Lj3g0017554 Lotus japonicus HOM05D006220 ORTHO05D007590 2.9e-79 300.4 583 65.7
Aa31LG8G2650 Aethionema arabicum HOM05D006220 ORTHO05D007590 5.5e-78 296.2 643 59.9
TPR.G38952 Trifolium pratense HOM05D006220 ORTHO05D007590 9.4e-78 295.4 596 60.9
Aqoxy4G01032 Aquilegia oxysepala HOM05D006220 ORTHO05D007590 4.0e-76 290.0 582 66.8
FvH4_3g20490 Fragaria vesca HOM05D006220 ORTHO05D007590 4.0e-76 290.0 585 67.0
Oeu008016.1 Olea europaea HOM05D006220 ORTHO05D007590 5.2e-76 289.7 316 61.4
Psat5g245040 Pisum sativum HOM05D006220 ORTHO05D007590 8.8e-76 288.9 584 66.6
FAN11G1997 Fragaria x ananassa HOM05D006220 ORTHO05D007590 2.0e-75 287.7 599 60.4
FAN16G3027 Fragaria x ananassa HOM05D006220 ORTHO05D007590 2.0e-75 287.7 585 66.8
Potri.011G121700 Populus trichocarpa HOM05D006220 ORTHO05D007590 1.7e-74 284.6 583 66.4
SalBow7G3592 Salvia bowleyana HOM05D006220 ORTHO05D007590 3.7e-74 283.5 558 65.2
Nn1g06599 Nelumbo nucifera HOM05D006220 ORTHO05D007590 4.8e-74 283.1 628 61.3
Sabra11G0107700 Salix brachista HOM05D006220 ORTHO05D007590 4.8e-74 283.1 683 60.0
CDE05G0932 Ceratophyllum demersum HOM05D006220 ORTHO05D007590 8.2e-74 282.3 585 65.5
Rhsim06G0196800 Rhododendron simsii HOM05D006220 ORTHO05D007590 2.4e-73 280.8 600 64.5
Medtr2g079560 Medicago truncatula HOM05D006220 ORTHO05D007590 4.1e-73 280.0 590 65.3
VMungo1080G0525 Vigna mungo HOM05D006220 ORTHO05D007590 4.1e-73 280.0 562 68.5
Hma1.2p1_0148F.1_g066170 Hydrangea macrophylla HOM05D006220 ORTHO05D007590 1.6e-72 278.1 328 70.1
Peaxi162Scf00027g02813 Petunia axillaris HOM05D006220 ORTHO05D007590 4.5e-72 276.6 561 70.4
AagrBONN_evm.TU.Sc2ySwM_362.1464 Anthoceros agrestis HOM05D006220 ORTHO05D007590 1.0e-71 275.4 590 62.7
PSO210G4054 Papaver somniferum HOM05D006220 ORTHO05D007590 1.3e-71 275.0 584 64.6
C05p51740 Brassica napus HOM05D006220 ORTHO05D007590 5.0e-71 273.1 518 74.1
CiPaw.11G172800 Carya illinoinensis HOM05D006220 ORTHO05D007590 1.0e-68 265.4 446 75.1
Phvul.005G083000 Phaseolus vulgaris HOM05D006220 ORTHO05D007590 3.0e-68 263.8 587 64.7
Dinv08311 Davidia involucrata HOM05D006220 ORTHO05D007590 4.8e-66 256.5 413 60.0
EL10Ac4g08136 Beta vulgaris HOM05D006220 ORTHO05D007590 2.4e-65 254.2 562 62.1
ATR0680G100 Amborella trichopoda HOM05D006220 ORTHO05D007590 5.0e-63 246.5 583 64.3
MBI17_g46353_MAGBIO Magnolia biondii HOM05D006220 ORTHO05D007590 3.2e-62 243.8 408 60.0
Mapoly0029s0091 Marchantia polymorpha HOM05D006220 ORTHO05D007590 3.6e-61 240.4 588 61.6
Haze_09468 Corylus avellana HOM05D006220 ORTHO05D007590 6.8e-60 236.1 223 67.7
PSO832G1845 Papaver somniferum HOM05D006220 ORTHO05D007590 7.5e-59 232.6 584 62.2
vmacro11856 Vaccinium macrocarpon HOM05D006220 ORTHO05D007590 1.8e-57 228.0 586 57.8
Lj1A847G19 Lonicera japonica HOM05D006220 ORTHO05D007590 5.9e-56 223.0 544 62.9
Pp3c6_15930 Physcomitrium patens HOM05D006220 ORTHO05D007590 1.1e-54 218.8 593 54.6
unitig_26.g9535 Utricularia gibba HOM05D006220 ORTHO05D007590 1.6e-53 214.9 558 38.0
SMO200G0168 Selaginella moellendorffii HOM05D006220 ORTHO05D007590 8.6e-47 192.6 586 59.0
MD11G1243500 Malus domestica HOM05D006220 ORTHO05D007590 7.5e-43 179.5 198 62.6
arahy.Tifrunner.gnm1.ann1.XCJ8AH Arachis hypogaea HOM05D006220 ORTHO05D007590 1.2e-40 172.2 227 58.1
FAN11G3846 Fragaria x ananassa HOM05D000189 ORTHO05D007610 1.8e-36 158.3 145 57.9
Gohir.1Z049312 Gossypium hirsutum HOM05D006220 ORTHO05D007590 3.6e-29 134.0 121 64.5
Cc05_g12270 Coffea canephora HOM05D006220 ORTHO05D007590 6.4e-26 123.2 143 62.9
Cc05_g12290 Coffea canephora HOM05D006220 ORTHO05D007590 6.4e-26 123.2 143 62.9
Cc05_g12300 Coffea canephora HOM05D006220 ORTHO05D007590 6.4e-26 123.2 143 62.9
CBR_g29878 Chara braunii HOM05D006220 ORTHO05D007590 4.6e-24 117.1 246 32.1
HPP92_027622 Vanilla planifolia HOM05D006220 ORTHO05D007590 8.1e-21 106.3 75 69.3
Sabra11G0106700 Salix brachista HOM05D006220 ORTHO05D007590 1.1e-20 105.9 75 70.7
Sabra11G0107000 Salix brachista HOM05D006220 ORTHO05D007590 1.1e-20 105.9 75 70.7
Sabra11G0105900 Salix brachista HOM05D006220 ORTHO05D007590 3.1e-20 104.4 75 69.3
Nitab4.5_0001320g0180 Nicotiana tabacum HOM05D006220 ORTHO05D007590 5.2e-20 103.6 98 59.2
Sabra11G0105600 Salix brachista HOM05D006220 ORTHO05D007590 6.8e-20 103.2 75 69.3
Thecc.07G078400 Theobroma cacao HOM05D006220 ORTHO05D007590 1.2e-19 102.4 100 80.0
Lsat_1_v5_gn_9_85500 Lactuca sativa HOM05D006220 ORTHO05D007590 8.4e-18 96.3 113 47.8
Sc13g0008670 Simmondsia chinensis HOM05D006220 ORTHO05D007590 1.0e-15 89.4 119 68.1
Haze_09464 Corylus avellana HOM05D006220 ORTHO05D007590 2.1e-13 81.6 53 73.6
HanXRQChr09g0260971 Helianthus annuus HOM05D006220 ORTHO05D007590 1.4e-12 79.0 60 65.0
CBR_g29877 Chara braunii HOM05D005358 ORTHO05D006384 9.0e-12 76.3 75 46.7
vmacro07967 Vaccinium macrocarpon HOM05D004270 ORTHO05D007590 4.9e-10 70.5 78 47.4
Atru.chr2.2722 Acer truncatum HOM05D006220 ORTHO05D017154 8.4e-10 69.7 164 31.1
MCO03G083 Micromonas commoda HOM05D006220 ORTHO05D007590 1.9e-09 68.6 297 31.3
Cre01.g054100 Chlamydomonas reinhardtii HOM05D006220 ORTHO05D007590 9.3e-09 66.2 225 40.4
Nn065s42227 Nelumbo nucifera HOM05D017120 ORTHO05D017154 2.3e-07 61.6 62 50.0


User provided reference genes

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