Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C016319.2 Cucumis melo HOM05D003758 ORTHO05D004344 0.0e+00 1707.6 848 100.0
CsaV3_4G006310 Cucumis sativus L. HOM05D003758 ORTHO05D004344 0.0e+00 1526.9 848 90.3
Sed0008176 Sechium edule HOM05D003758 ORTHO05D004344 0.0e+00 1317.0 860 77.4
Sed0003653 Sechium edule HOM05D003758 ORTHO05D004344 0.0e+00 1191.4 795 75.2
Cfa004172 Carpinus fangiana HOM05D003758 ORTHO05D004344 1.0e-226 790.8 852 50.2
Haze_15238 Corylus avellana HOM05D003758 ORTHO05D004344 2.0e-225 786.6 853 49.8
CiPaw.13G125700 Carya illinoinensis HOM05D003758 ORTHO05D004344 1.0e-221 774.2 854 49.9
TWI36G1552 Tripterygium wilfordii HOM05D003758 ORTHO05D004344 5.5e-220 768.5 854 49.3
QL03p022487 Quercus lobata HOM05D003758 ORTHO05D004344 1.6e-219 766.9 855 49.1
RcHm_v2.0_Chr3g0487391 Rosa chinensis HOM05D003758 ORTHO05D004344 2.7e-219 766.1 858 50.2
FvH4_1g27070 Fragaria vesca HOM05D003758 ORTHO05D004344 4.7e-219 765.4 857 49.6
Potri.002G194100 Populus trichocarpa HOM05D003758 ORTHO05D004344 3.0e-218 762.7 859 50.1
Dinv37509 Davidia involucrata HOM05D003758 ORTHO05D004344 6.7e-218 761.5 856 49.9
TAR633G1738 Trochodendron aralioides HOM05D003758 ORTHO05D004344 8.8e-218 761.1 865 49.5
Ciclev10023744m.g Citrus clementina HOM05D003758 ORTHO05D004344 4.8e-216 755.4 862 48.8
Atru.chr5.975 Acer truncatum HOM05D003758 ORTHO05D004344 1.8e-215 753.4 858 49.3
FAN19G1056 Fragaria x ananassa HOM05D003758 ORTHO05D004344 2.4e-215 753.1 881 48.4
FAN28G1741 Fragaria x ananassa HOM05D003758 ORTHO05D004344 1.7e-213 746.9 859 49.0
GSVIVG01020570001 Vitis vinifera HOM05D003758 ORTHO05D004344 1.1e-212 744.2 852 49.5
CSS0004415 Camellia sinensis var. sinensis HOM05D003758 ORTHO05D004344 8.0e-211 738.0 847 49.0
Manes.05G014400 Manihot esculenta HOM05D003758 ORTHO05D004344 1.8e-210 736.9 856 49.4
Thecc.01G315600 Theobroma cacao HOM05D003758 ORTHO05D004344 3.0e-210 736.1 856 47.2
Manes.05G014105 Manihot esculenta HOM05D003758 ORTHO05D004344 8.8e-210 734.6 856 49.4
MD17G1277400 Malus domestica HOM05D003758 ORTHO05D004344 1.5e-209 733.8 852 48.2
CSS0000786 Camellia sinensis var. sinensis HOM05D003758 ORTHO05D004344 2.6e-209 733.0 848 48.7
Manes.05G012284 Manihot esculenta HOM05D003758 ORTHO05D004344 9.7e-209 731.1 856 49.5
Duzib211G0665 Durio zibethinus HOM05D003758 ORTHO05D004344 2.2e-208 729.9 859 47.3
FAN23G2430 Fragaria x ananassa HOM05D003758 ORTHO05D004344 1.4e-207 727.2 875 47.8
Manes.17G075900 Manihot esculenta HOM05D003758 ORTHO05D004344 1.9e-204 716.8 870 47.9
Gohir.A11G108400 Gossypium hirsutum HOM05D003758 ORTHO05D004344 2.0e-201 706.8 857 45.7
Gorai.007G121400 Gossypium raimondii HOM05D003758 ORTHO05D004344 2.6e-201 706.4 867 45.6
Nn6g32438 Nelumbo nucifera HOM05D003758 ORTHO05D004344 2.7e-198 696.4 864 45.5
Ca_26914_v3 Cicer arietinum L. HOM05D003758 ORTHO05D004344 4.5e-198 695.7 857 47.4
Ca_29676_v3 Cicer arietinum L. HOM05D003758 ORTHO05D004344 4.5e-198 695.7 857 47.4
vmacro07358 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 2.5e-196 689.9 876 45.5
vmacro23005 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 2.1e-195 686.8 876 45.3
Lj3g0021338 Lotus japonicus HOM05D003758 ORTHO05D004344 1.4e-194 684.1 886 46.2
Lj4g0003540 Lotus japonicus HOM05D003758 ORTHO05D004344 4.0e-194 682.6 880 45.8
Medtr4g008840 Medicago truncatula HOM05D003758 ORTHO05D004344 2.6e-193 679.9 871 46.0
Glyma.16G071100 Glycine max HOM05D003758 ORTHO05D004344 5.7e-193 678.7 892 45.9
Psat7g259120 Pisum sativum HOM05D003758 ORTHO05D004344 1.3e-192 677.6 879 46.2
Glyma.15G216400 Glycine max HOM05D003758 ORTHO05D004344 6.3e-192 675.2 880 45.8
Manes.05G007428 Manihot esculenta HOM05D003758 ORTHO05D004344 3.5e-190 669.5 859 46.8
Eucgr.F03545 Eucalyptus grandis HOM05D003758 ORTHO05D004344 4.5e-190 669.1 876 46.0
COL.COLO4_23214 Corchorus olitorius HOM05D003758 ORTHO05D004344 8.6e-189 664.8 874 44.7
MBI19_g03239_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 8.6e-189 664.8 905 43.5
Solyc11g007800.3 Solanum lycopersicum HOM05D003758 ORTHO05D004344 1.1e-188 664.5 868 45.5
Oeu049922.1 Olea europaea HOM05D003758 ORTHO05D004344 1.8e-186 657.1 859 45.1
Nitab4.5_0000321g0240 Nicotiana tabacum HOM05D003758 ORTHO05D004344 4.0e-186 656.0 891 44.0
Rhsim13G0004000 Rhododendron simsii HOM05D003758 ORTHO05D004344 5.2e-186 655.6 883 45.2
VMungo1127G2096 Vigna mungo HOM05D003758 ORTHO05D004344 8.9e-186 654.8 878 45.0
PGSC0003DMG400027361 Solanum tuberosum HOM05D003758 ORTHO05D004344 2.0e-185 653.7 864 45.5
Sopen11g003660 Solanum pennellii HOM05D003758 ORTHO05D004344 4.4e-185 652.5 868 45.0
Nitab4.5_0004743g0050 Nicotiana tabacum HOM05D003758 ORTHO05D004344 5.7e-185 652.1 896 44.0
arahy.Tifrunner.gnm1.ann1.CZ320C Arachis hypogaea HOM05D003758 ORTHO05D004344 7.5e-185 651.7 910 44.2
Thhalv10024413m.g Eutrema salsugineum HOM05D003758 ORTHO05D004344 1.7e-184 650.6 849 43.9
AT2G47300 Arabidopsis thaliana HOM05D003758 ORTHO05D004344 1.8e-183 647.1 845 44.1
PSO339G3435 Papaver somniferum HOM05D003758 ORTHO05D004344 4.1e-183 646.0 866 43.9
Lalb_Chr02g0146891 Lupinus albus HOM05D003758 ORTHO05D004344 5.4e-183 645.6 859 45.5
Carub.0004s3002 Capsella rubella HOM05D003758 ORTHO05D004344 9.2e-183 644.8 842 44.1
PSO384G2631 Papaver somniferum HOM05D003758 ORTHO05D004344 1.6e-182 644.0 867 44.1
Nitab4.5_0004412g0060 Nicotiana tabacum HOM05D003758 ORTHO05D004344 2.0e-182 643.7 887 44.6
CAN.G135.34 Capsicum annuum HOM05D003758 ORTHO05D004344 4.6e-182 642.5 873 44.4
CANSAT35G0058 Cannabis sativa HOM05D003758 ORTHO05D004344 3.0e-181 639.8 866 45.2
Manes.05G010463 Manihot esculenta HOM05D003758 ORTHO05D004344 6.6e-181 638.6 737 49.5
ECA248G1618 Erigeron canadensis HOM05D003758 ORTHO05D004344 1.1e-180 637.9 839 42.8
AUR62024624 Chenopodium quinoa HOM05D003758 ORTHO05D004344 1.5e-180 637.5 854 44.3
DCAR_018285 Daucus carota HOM05D003758 ORTHO05D004344 5.6e-180 635.6 853 44.2
CiPaw.05G057800 Carya illinoinensis HOM05D003758 ORTHO05D004344 2.8e-179 633.3 748 47.2
BcaB02g08631 Brassica carinata HOM05D003758 ORTHO05D004344 4.0e-178 629.4 849 43.7
Sp7g11950 Schrenkiella parvula HOM05D003758 ORTHO05D004344 8.9e-178 628.2 846 42.4
Aqoxy6G02867 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 2.6e-177 626.7 870 43.4
BcaC02g09356 Brassica carinata HOM05D003758 ORTHO05D004344 3.4e-177 626.3 841 43.5
CARHR142690 Cardamine hirsuta HOM05D003758 ORTHO05D004344 7.5e-177 625.2 844 42.5
Migut.N00382 Erythranthe guttata HOM05D003758 ORTHO05D004344 2.9e-176 623.2 858 43.2
CiPaw.05G057600 Carya illinoinensis HOM05D003758 ORTHO05D004344 3.7e-176 622.9 857 43.9
Cc02_g30290 Coffea canephora HOM05D003758 ORTHO05D004344 8.3e-176 621.7 853 42.3
Phvul.011G184700 Phaseolus vulgaris HOM05D003758 ORTHO05D004344 5.4e-175 619.0 877 42.9
PGR044G1293 Punica granatum HOM05D003758 ORTHO05D004344 5.4e-175 619.0 853 44.1
PGR132G0005 Punica granatum HOM05D003758 ORTHO05D004344 5.4e-175 619.0 853 44.1
Peaxi162Scf00192g01619 Petunia axillaris HOM05D003758 ORTHO05D004344 2.0e-174 617.1 879 42.9
Hund21053 Selenicereus undatus HOM05D003758 ORTHO05D004344 2.0e-174 617.1 855 43.6
HanXRQChr01g0018011 Helianthus annuus HOM05D003758 ORTHO05D004344 4.6e-174 615.9 843 42.2
arahy.Tifrunner.gnm1.ann1.8X0TS3 Arachis hypogaea HOM05D003758 ORTHO05D004344 7.8e-174 615.1 918 42.9
vmacro02393 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 9.5e-172 608.2 950 41.2
C04p41700 Brassica napus HOM05D003758 ORTHO05D004344 2.1e-171 607.1 849 42.5
BolC4t25747H Brassica oleracea HOM05D003758 ORTHO05D004344 2.1e-171 607.1 849 42.5
BraA04t16490Z Brassica rapa HOM05D003758 ORTHO05D004344 2.8e-171 606.7 848 42.5
Aa31LG1G28620 Aethionema arabicum HOM05D003758 ORTHO05D004344 4.0e-170 602.8 865 41.7
AL4G46860 Arabidopsis lyrata HOM05D003758 ORTHO05D004344 8.9e-170 601.7 848 42.0
Psat4g209760 Pisum sativum HOM05D003758 ORTHO05D004344 1.2e-169 601.3 820 44.1
A04p08020 Brassica napus HOM05D003758 ORTHO05D004344 4.4e-169 599.4 846 42.2
ATR0693G226 Amborella trichopoda HOM05D003758 ORTHO05D004344 5.1e-165 585.9 914 40.0
Manes.08G002202 Manihot esculenta HOM05D003758 ORTHO05D004344 8.6e-165 585.1 737 47.1
Lsat_1_v5_gn_1_61501 Lactuca sativa HOM05D003758 ORTHO05D004344 1.1e-164 584.7 853 41.0
SGA_v2.0_scaffold114G31985 Striga asiatica HOM05D003758 ORTHO05D004344 1.6e-163 580.9 888 42.0
Atru.chr9.1365 Acer truncatum HOM05D003758 ORTHO05D004344 3.1e-154 550.1 847 40.3
Ah.02g112390 Amaranthus hybridus HOM05D003758 ORTHO05D004344 9.9e-153 545.0 852 39.4
AUR62011780 Chenopodium quinoa HOM05D003758 ORTHO05D004344 2.9e-152 543.5 746 42.5
SalBow3G2832 Salvia bowleyana HOM05D003758 ORTHO05D004344 9.3e-151 538.5 814 41.2
HPP92_010605 Vanilla planifolia HOM05D003758 ORTHO05D004344 9.6e-148 528.5 880 38.1
unitig_8.g3963 Utricularia gibba HOM05D003758 ORTHO05D004344 6.9e-146 522.3 855 39.4
Dinv10116 Davidia involucrata HOM05D003758 ORTHO05D004344 3.8e-144 516.5 607 47.4
Prupe.3G010600 Prunus persica HOM05D003758 ORTHO05D004344 5.4e-143 512.7 603 48.1
TAR629G2570 Trochodendron aralioides HOM05D003758 ORTHO05D004344 8.1e-139 498.8 619 46.5
Gohir.D11G112900 Gossypium hirsutum HOM05D003758 ORTHO05D004344 1.2e-137 495.0 657 44.4
Haze_16412 Corylus avellana HOM05D003758 ORTHO05D004344 4.6e-134 483.0 764 39.8
THA.LOC104807090 Tarenaya hassleriana HOM05D003758 ORTHO05D004344 1.3e-133 481.5 705 40.9
FAN26G0338 Fragaria x ananassa HOM05D003758 ORTHO05D004344 5.3e-130 469.5 556 48.4
GSVIVG01038383001 Vitis vinifera HOM05D003758 ORTHO05D004344 3.7e-123 446.8 665 41.5
Sc05g0000350 Simmondsia chinensis HOM05D003758 ORTHO05D004344 4.5e-121 439.9 635 41.3
Eucgr.D02543 Eucalyptus grandis HOM05D003758 ORTHO05D004344 7.4e-116 422.5 872 36.5
MSTRG.19341 Avicennia marina HOM05D003758 ORTHO05D004344 2.0e-113 414.5 689 37.6
Lj2A672T52 Lonicera japonica HOM05D003758 ORTHO05D004344 4.5e-113 413.3 558 43.2
Cpa.g.sc18.69 Carica papaya HOM05D003758 ORTHO05D004344 1.1e-106 392.1 489 46.4
arahy.Tifrunner.gnm1.ann1.C8HKPK Arachis hypogaea HOM05D003758 ORTHO05D004344 2.0e-92 344.7 579 40.2
CiPaw.05G057200 Carya illinoinensis HOM05D003758 ORTHO05D004344 2.6e-92 344.4 552 39.1
Cpa.g.sc18.67 Carica papaya HOM05D003758 ORTHO05D004344 3.3e-92 344.0 374 48.7
Zm00001eb331260 Zea mays HOM05D003758 ORTHO05D004344 1.2e-84 318.9 539 36.9
Cc00_g01260 Coffea canephora HOM05D003758 ORTHO05D004344 7.5e-84 316.2 655 33.4
CDE11G0119 Ceratophyllum demersum HOM05D003758 ORTHO05D004344 9.8e-84 315.8 469 39.9
AagrBONN_evm.TU.Sc2ySwM_344.4368 Anthoceros agrestis HOM05D003758 ORTHO05D004344 6.3e-83 313.2 962 28.1
MD17G1275700 Malus domestica HOM05D003758 ORTHO05D004344 4.2e-79 300.4 306 52.0
Pp3c2_6540 Physcomitrium patens HOM05D003758 ORTHO05D004344 4.0e-77 293.9 1062 27.1
Actinidia03664 Actinidia chinensis HOM05D003758 ORTHO05D004344 5.2e-77 293.5 642 32.2
AL302U10030 Arabidopsis lyrata HOM05D003758 ORTHO05D004344 2.4e-74 284.6 321 49.8
Os11g0677500 Oryza sativa ssp. japonica HOM05D003758 ORTHO05D004344 1.3e-67 262.3 488 34.6
Cc00_g26030 Coffea canephora HOM05D003758 ORTHO05D004344 6.4e-67 260.0 474 37.1
Mapoly0039s0104 Marchantia polymorpha HOM05D003758 ORTHO05D004344 4.3e-63 247.3 619 28.8
TAR629G0826 Trochodendron aralioides HOM05D003758 ORTHO05D004344 4.9e-59 233.8 202 61.4
CDE11G1215 Ceratophyllum demersum HOM05D003758 ORTHO05D004344 8.9e-53 213.0 306 43.5
Dinv10117 Davidia involucrata HOM05D003758 ORTHO05D004344 2.6e-52 211.5 171 66.1
TPR.G844 Trifolium pratense HOM05D003758 ORTHO05D004344 3.2e-50 204.5 339 39.2
Sabra02G0162300 Salix brachista HOM05D003758 ORTHO05D004344 7.3e-47 193.4 172 56.4
RcHm_v2.0_Chr3g0487761 Rosa chinensis HOM05D003758 ORTHO05D004344 3.6e-46 191.0 180 54.4
CiPaw.05G057300 Carya illinoinensis HOM05D003758 ORTHO05D004344 2.6e-44 184.9 199 48.7
MSTRG.19342 Avicennia marina HOM05D003758 ORTHO05D004344 6.4e-43 180.3 175 56.0
Actinidia03665 Actinidia chinensis HOM05D003758 ORTHO05D004344 7.1e-42 176.8 154 63.6
MD17G1275500 Malus domestica HOM05D003758 ORTHO05D004344 3.5e-41 174.5 192 50.5
TPR.G35143 Trifolium pratense HOM05D003758 ORTHO05D004344 3.5e-41 174.5 256 41.0
EL10As5g23552 Beta vulgaris HOM05D003758 ORTHO05D004344 6.4e-35 153.7 165 51.5
TPR.G18538 Trifolium pratense HOM05D003758 ORTHO05D004344 1.5e-31 142.5 124 54.0
Lj2A672T51 Lonicera japonica HOM05D003758 ORTHO05D004344 9.6e-31 139.8 124 54.0
TPR.G29732 Trifolium pratense HOM05D003758 ORTHO05D004344 9.6e-31 139.8 124 52.4
Cc00_g26020 Coffea canephora HOM05D003758 ORTHO05D004344 1.1e-29 136.3 116 56.0
HanXRQChr06g0163771 Helianthus annuus HOM05D003758 ORTHO05D004344 3.1e-29 134.8 282 31.2
arahy.Tifrunner.gnm1.ann1.NW0172 Arachis hypogaea HOM05D003758 ORTHO05D008556 2.0e-28 132.1 127 56.7
THA.LOC104808447 Tarenaya hassleriana HOM05D003758 ORTHO05D004344 3.4e-28 131.3 143 51.7
Glyma.09G000100 Glycine max HOM05D003758 ORTHO05D004344 7.6e-28 130.2 145 53.1
MBI16_g26326_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 7.6e-28 130.2 112 57.1
MBI18_g24870_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 7.6e-28 130.2 99 63.6
Glyma.04G000100 Glycine max HOM05D003758 ORTHO05D004344 1.3e-27 129.4 145 53.1
MBI19_g28115_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 1.2e-25 122.9 90 65.6
SalBow1G0003 Salvia bowleyana HOM05D003758 ORTHO05D004344 3.0e-24 118.2 255 31.0
TPR.G23107 Trifolium pratense HOM05D003758 ORTHO05D004344 6.7e-24 117.1 198 38.9
CBR_g41368 Chara braunii HOM05D003758 ORTHO05D004344 7.4e-23 113.6 273 29.3
MD17G1273000 Malus domestica HOM05D003758 ORTHO05D004344 1.6e-22 112.5 468 24.6
HanXRQChr06g0163761 Helianthus annuus HOM05D003758 ORTHO05D004344 2.8e-22 111.7 68 72.1
Glyma.16G000100 Glycine max HOM05D003758 ORTHO05D004344 2.4e-21 108.6 134 49.3
Glyma.09G286500 Glycine max HOM05D003758 ORTHO05D004344 4.0e-21 107.8 134 50.7
Glyma.05G249100 Glycine max HOM05D003758 ORTHO05D004344 9.0e-21 106.7 134 49.3
MD17G1275600 Malus domestica HOM05D003758 ORTHO05D004344 9.9e-20 103.2 110 44.5
GSVIVG01038399001 Vitis vinifera HOM05D003758 ORTHO05D004344 3.2e-18 98.2 99 52.5
Glyma.17G000100 Glycine max HOM05D003758 ORTHO05D004344 7.9e-17 93.6 165 37.6
CBR_g22385 Chara braunii HOM05D006522 ORTHO05D008183 3.9e-16 91.3 120 41.7
Aqoxy3G01506 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 3.1e-13 81.6 78 52.6
MBI02_g41251_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 1.3e-11 76.3 64 60.9
TAR623G1284 Trochodendron aralioides HOM05D003758 ORTHO05D004344 1.9e-10 72.4 58 58.6
ECA236G0722 Erigeron canadensis HOM05D003758 ORTHO05D004344 4.2e-10 71.2 183 29.0
Cc02_g29260 Coffea canephora HOM05D003758 ORTHO05D004344 5.5e-10 70.9 58 62.1
Cre04.g214690 Chlamydomonas reinhardtii HOM05D003758 ORTHO05D004344 6.0e-09 67.4 141 32.6
CAN.G231.17 Capsicum annuum HOM05D003758 ORTHO05D004344 8.7e-08 63.5 90 43.3
Os11g0677425 Oryza sativa ssp. japonica HOM05D003758 ORTHO05D004344 5.7e-07 60.8 155 27.1
MD17G1275800 Malus domestica HOM05D003758 ORTHO05D004344 6.3e-06 57.4 56 53.6


User provided reference genes

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