Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C016014.2 Cucumis melo HOM05D004412 ORTHO05D005316 1.7e-108 396.0 194 100.0
CsaV3_7G029140 Cucumis sativus L. HOM05D004412 ORTHO05D005316 9.3e-107 390.2 194 97.9
ClCG09G005980 Citrullus lanatus HOM05D004412 ORTHO05D005316 4.8e-103 377.9 193 95.9
Sed0017881 Sechium edule HOM05D004412 ORTHO05D005316 1.8e-97 359.4 192 89.1
CiPaw.07G106900 Carya illinoinensis HOM05D004412 ORTHO05D005316 8.2e-87 323.9 191 81.7
Dinv19708 Davidia involucrata HOM05D004412 ORTHO05D005316 1.1e-86 323.6 191 82.2
Prupe.8G259100 Prunus persica HOM05D004412 ORTHO05D005316 1.1e-86 323.6 191 81.7
MD03G1285900 Malus domestica HOM05D004412 ORTHO05D005316 1.8e-86 322.8 191 81.2
MD11G1305700 Malus domestica HOM05D004412 ORTHO05D005316 4.1e-86 321.6 191 79.6
Lj2C1191G7 Lonicera japonica HOM05D004412 ORTHO05D005316 6.9e-86 320.9 191 80.6
RcHm_v2.0_Chr6g0293711 Rosa chinensis HOM05D004412 ORTHO05D005316 2.0e-85 319.3 191 81.2
Rhsim13G0011700 Rhododendron simsii HOM05D004412 ORTHO05D005316 7.7e-85 317.4 191 79.6
FvH4_2g25500 Fragaria vesca HOM05D004412 ORTHO05D005316 1.1e-83 313.5 191 79.1
vmacro02463 Vaccinium macrocarpon HOM05D004412 ORTHO05D005316 2.5e-83 312.4 191 79.1
Glyma.03G213500 Glycine max HOM05D004412 ORTHO05D005316 4.2e-83 311.6 190 80.5
GSVIVG01027984001 Vitis vinifera HOM05D004412 ORTHO05D005316 5.5e-83 311.2 192 78.6
CANSAT25G2200 Cannabis sativa HOM05D004412 ORTHO05D005316 7.2e-83 310.8 192 77.6
CANSAT25G3274 Cannabis sativa HOM05D004412 ORTHO05D005316 7.2e-83 310.8 192 77.6
Ca_09149_v3 Cicer arietinum L. HOM05D004412 ORTHO05D005316 9.4e-83 310.5 190 78.9
Psat0s3188g0040 Pisum sativum HOM05D004412 ORTHO05D005316 9.4e-83 310.5 191 77.5
Thecc.01G297900 Theobroma cacao HOM05D004412 ORTHO05D005316 2.1e-82 309.3 191 78.5
TWI14G0137 Tripterygium wilfordii HOM05D004412 ORTHO05D005316 3.6e-82 308.5 191 78.0
Cfa005939 Carpinus fangiana HOM05D004412 ORTHO05D005316 4.7e-82 308.1 193 76.7
FAN24G2667 Fragaria x ananassa HOM05D004412 ORTHO05D005316 4.7e-82 308.1 192 76.6
TAR362G0097 Trochodendron aralioides HOM05D004412 ORTHO05D005316 4.7e-82 308.1 191 76.4
Medtr7g108680 Medicago truncatula HOM05D004412 ORTHO05D005316 6.1e-82 307.8 190 78.4
Potri.002G205800 Populus trichocarpa HOM05D004412 ORTHO05D005316 7.9e-82 307.4 191 79.1
Atru.chr5.1172 Acer truncatum HOM05D004412 ORTHO05D005316 1.0e-81 307.0 191 75.9
Lj1g0006783 Lotus japonicus HOM05D004412 ORTHO05D005316 1.4e-81 306.6 190 77.4
TPR.G9643 Trifolium pratense HOM05D004412 ORTHO05D005316 3.9e-81 305.1 190 76.3
Haze_04907 Corylus avellana HOM05D004412 ORTHO05D005316 5.1e-81 304.7 193 75.6
Manes.01G217400 Manihot esculenta HOM05D004412 ORTHO05D005316 5.1e-81 304.7 191 75.4
Duzib211G0511 Durio zibethinus HOM05D004412 ORTHO05D005316 8.8e-81 303.9 191 77.5
Manes.05G063600 Manihot esculenta HOM05D004412 ORTHO05D005316 8.8e-81 303.9 191 75.4
PGR119G0650 Punica granatum HOM05D004412 ORTHO05D005316 8.8e-81 303.9 191 75.9
Nn4g25831 Nelumbo nucifera HOM05D004412 ORTHO05D005316 1.1e-80 303.5 191 75.4
Phvul.001G206100 Phaseolus vulgaris HOM05D004412 ORTHO05D005316 1.5e-80 303.1 190 77.9
Glyma.19G210300 Glycine max HOM05D004412 ORTHO05D005316 3.3e-80 302.0 205 73.7
Duzib211G0323 Durio zibethinus HOM05D004412 ORTHO05D005316 4.4e-80 301.6 191 77.0
Potri.014G130900 Populus trichocarpa HOM05D004412 ORTHO05D005316 4.4e-80 301.6 191 75.9
Aqoxy5G00729 Aquilegia oxysepala HOM05D004412 ORTHO05D005316 5.7e-80 301.2 192 76.0
DCAR_005799 Daucus carota HOM05D004412 ORTHO05D005316 9.7e-80 300.4 190 77.4
Sabra14G0097400 Salix brachista HOM05D004412 ORTHO05D005316 9.7e-80 300.4 194 73.7
Eucgr.H01156 Eucalyptus grandis HOM05D004412 ORTHO05D005316 1.7e-79 299.7 191 78.5
TWI59G0713 Tripterygium wilfordii HOM05D004412 ORTHO05D005316 1.7e-79 299.7 191 77.0
Lalb_Chr18g0047081 Lupinus albus HOM05D004412 ORTHO05D005316 2.2e-79 299.3 191 74.9
TAR633G0484 Trochodendron aralioides HOM05D004412 ORTHO05D005316 2.2e-79 299.3 192 75.5
Medtr8g058563 Medicago truncatula HOM05D004412 ORTHO05D005316 6.3e-79 297.7 178 80.9
arahy.Tifrunner.gnm1.ann1.E95WBF Arachis hypogaea HOM05D004412 ORTHO05D005316 8.2e-79 297.4 192 77.1
CAN.G339.23 Capsicum annuum HOM05D004412 ORTHO05D005316 1.1e-78 297.0 192 73.4
Duzib138G0322 Durio zibethinus HOM05D004412 ORTHO05D005316 1.1e-78 297.0 191 75.9
arahy.Tifrunner.gnm1.ann1.K6REY5 Arachis hypogaea HOM05D004412 ORTHO05D005316 1.4e-78 296.6 192 76.6
PSO302G0109 Papaver somniferum HOM05D004412 ORTHO05D005316 1.8e-78 296.2 191 74.9
THA.LOC104825974 Tarenaya hassleriana HOM05D004412 ORTHO05D005316 2.4e-78 295.8 194 73.7
arahy.Tifrunner.gnm1.ann1.V4DRNI Arachis hypogaea HOM05D004412 ORTHO05D005316 5.3e-78 294.7 182 75.8
PSO210G7114 Papaver somniferum HOM05D004412 ORTHO05D005316 5.3e-78 294.7 191 74.3
Ciclev10021279m.g Citrus clementina HOM05D004412 ORTHO05D005316 7.0e-78 294.3 205 71.2
Hma1.2p1_0491F.1_g164430 Hydrangea macrophylla HOM05D004412 ORTHO05D005316 9.1e-78 293.9 191 75.4
Gohir.A12G131600 Gossypium hirsutum HOM05D004412 ORTHO05D005316 1.2e-77 293.5 190 75.3
arahy.Tifrunner.gnm1.ann1.TC9I43 Arachis hypogaea HOM05D004412 ORTHO05D005316 1.6e-77 293.1 182 75.3
COL.COLO4_23368 Corchorus olitorius HOM05D004412 ORTHO05D005316 1.6e-77 293.1 191 73.8
Gohir.D12G135400 Gossypium hirsutum HOM05D004412 ORTHO05D005316 2.0e-77 292.7 190 75.8
PSO782G2310 Papaver somniferum HOM05D004412 ORTHO05D005316 4.5e-77 291.6 191 73.3
ATR0693G457 Amborella trichopoda HOM05D004412 ORTHO05D005316 5.9e-77 291.2 194 72.7
ECA247G0114 Erigeron canadensis HOM05D004412 ORTHO05D005316 5.9e-77 291.2 188 74.5
Gorai.008G146400 Gossypium raimondii HOM05D004412 ORTHO05D005316 1.3e-76 290.0 190 75.3
PSO832G3509 Papaver somniferum HOM05D004412 ORTHO05D005316 1.3e-76 290.0 191 73.3
AL1G12300 Arabidopsis lyrata HOM05D004412 ORTHO05D005316 1.7e-76 289.7 190 73.2
Hund18137 Selenicereus undatus HOM05D004412 ORTHO05D005316 1.7e-76 289.7 193 72.0
HanXRQChr15g0465781 Helianthus annuus HOM05D004412 ORTHO05D005316 2.2e-76 289.3 186 74.7
AT1G02880 Arabidopsis thaliana HOM05D004412 ORTHO05D005316 2.9e-76 288.9 190 73.7
SalBow3G3296 Salvia bowleyana HOM05D002199 ORTHO05D007829 3.8e-76 288.5 191 72.8
Lsat_1_v5_gn_9_901 Lactuca sativa HOM05D004412 ORTHO05D005316 6.5e-76 287.7 185 73.5
Gohir.D08G052500 Gossypium hirsutum HOM05D004412 ORTHO05D005316 8.5e-76 287.3 191 73.3
HanXRQChr10g0284561 Helianthus annuus HOM05D004412 ORTHO05D005316 8.5e-76 287.3 190 72.6
Thhalv10008492m.g Eutrema salsugineum HOM05D004412 ORTHO05D005316 1.1e-75 287.0 193 72.5
BcaB03g15756 Brassica carinata HOM05D004412 ORTHO05D005316 1.5e-75 286.6 193 72.0
DCAR_002821 Daucus carota HOM05D004412 ORTHO05D005316 1.5e-75 286.6 190 73.7
AT2G44750 Arabidopsis thaliana HOM05D004412 ORTHO05D005316 1.9e-75 286.2 190 72.1
Oeu032104.1 Olea europaea HOM05D004412 ORTHO05D005316 1.9e-75 286.2 196 73.0
Migut.D00201 Erythranthe guttata HOM05D004412 ORTHO05D005316 2.5e-75 285.8 193 71.0
A10p01550 Brassica napus HOM05D000147 ORTHO05D001254 3.2e-75 285.4 193 71.0
CDE05G1992 Ceratophyllum demersum HOM05D004412 ORTHO05D005316 4.2e-75 285.0 191 71.7
CDE11G0241 Ceratophyllum demersum HOM05D004412 ORTHO05D005316 4.2e-75 285.0 191 71.7
Dinv33040 Davidia involucrata HOM05D004412 ORTHO05D005316 4.2e-75 285.0 169 82.2
Gohir.A08G042700 Gossypium hirsutum HOM05D004412 ORTHO05D005316 4.2e-75 285.0 191 72.3
BolC5t28933H Brassica oleracea HOM05D004412 ORTHO05D005316 7.2e-75 284.3 196 71.4
Gorai.004G052600 Gossypium raimondii HOM05D004412 ORTHO05D005316 9.4e-75 283.9 191 72.8
BcaC05g24629 Brassica carinata HOM05D004412 ORTHO05D005316 1.2e-74 283.5 193 71.5
C05p01550 Brassica napus HOM05D000147 ORTHO05D001254 1.2e-74 283.5 193 71.5
BraA10t42430Z Brassica rapa HOM05D000147 ORTHO05D001254 2.1e-74 282.7 193 71.0
BcaB03g13500 Brassica carinata HOM05D004412 ORTHO05D005316 2.7e-74 282.3 193 70.5
Cc04_g10720 Coffea canephora HOM05D004412 ORTHO05D005316 2.7e-74 282.3 190 72.6
QL12p027258 Quercus lobata HOM05D004412 ORTHO05D005316 6.1e-74 281.2 191 72.3
PGSC0003DMG401011372 Solanum tuberosum HOM05D004412 ORTHO05D005316 6.1e-74 281.2 190 71.1
Carub.0001s0201 Capsella rubella HOM05D004412 ORTHO05D005316 1.0e-73 280.4 190 70.5
Sopen09g029800 Solanum pennellii HOM05D004412 ORTHO05D005316 1.0e-73 280.4 190 70.5
Peaxi162Scf00001g04911 Petunia axillaris HOM05D004412 ORTHO05D005316 1.4e-73 280.0 197 69.0
Sc05g0004150 Simmondsia chinensis HOM05D004412 ORTHO05D005316 1.4e-73 280.0 191 71.7
A08p37550 Brassica napus HOM05D004412 ORTHO05D005316 1.8e-73 279.6 193 71.0
Sp1g01880 Schrenkiella parvula HOM05D004412 ORTHO05D005316 1.8e-73 279.6 193 69.9
Hund05414 Selenicereus undatus HOM05D004412 ORTHO05D005316 1.8e-73 279.6 191 69.6
Solyc09g074970.3 Solanum lycopersicum HOM05D004412 ORTHO05D005316 5.2e-73 278.1 192 70.3
CSS0010827 Camellia sinensis var. sinensis HOM05D004412 ORTHO05D005316 6.7e-73 277.7 175 77.7
Carub.0007s3652 Capsella rubella HOM05D004412 ORTHO05D005316 8.8e-73 277.3 190 70.0
BcaC07g36986 Brassica carinata HOM05D004412 ORTHO05D005316 1.5e-72 276.6 193 69.9
BcaC07g36988 Brassica carinata HOM05D004412 ORTHO05D005316 1.5e-72 276.6 193 69.9
C08p00300 Brassica napus HOM05D004412 ORTHO05D005316 5.7e-72 274.6 193 69.4
HPP92_013717 Vanilla planifolia HOM05D004412 ORTHO05D005316 7.5e-72 274.2 195 67.2
Aa31LG1G9690 Aethionema arabicum HOM05D004412 ORTHO05D005316 2.2e-71 272.7 193 69.4
Zm00001eb142350 Zea mays HOM05D004412 ORTHO05D005316 2.2e-71 272.7 187 70.6
Actinidia32228 Actinidia chinensis HOM05D004412 ORTHO05D005316 6.3e-71 271.2 181 75.7
MSTRG.18165 Avicennia marina HOM05D004412 ORTHO05D005316 2.4e-70 269.2 191 70.7
BolC8t46831H Brassica oleracea HOM05D004412 ORTHO05D005316 2.4e-70 269.2 196 68.4
Os05g0367400 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 2.4e-70 269.2 198 68.2
EL10Ac2g03462 Beta vulgaris HOM05D004412 ORTHO05D005316 5.9e-69 264.6 194 66.5
MBI19_g12143_MAGBIO Magnolia biondii HOM05D004412 ORTHO05D005316 2.9e-68 262.3 246 57.3
AUR62008659 Chenopodium quinoa HOM05D004412 ORTHO05D005316 5.0e-68 261.5 190 64.7
AUR62033109 Chenopodium quinoa HOM05D000147 ORTHO05D001254 5.0e-68 261.5 190 65.3
Os01g0356500 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 1.5e-67 260.0 187 66.3
Sabra02G0153500 Salix brachista HOM05D004412 ORTHO05D005316 8.8e-65 250.8 151 80.8
Zm00001eb131550 Zea mays HOM05D004412 ORTHO05D005316 2.0e-64 249.6 202 61.4
SGA_v2.0_scaffold2G01402 Striga asiatica HOM05D002199 ORTHO05D007829 5.7e-64 248.1 194 66.0
SGA_v2.0_scaffold1G00376 Striga asiatica HOM05D004412 ORTHO05D005316 7.5e-64 247.7 193 64.8
BraA08t35652Z Brassica rapa HOM05D004412 ORTHO05D005316 1.8e-62 243.0 197 65.0
Zm00001eb285500 Zea mays HOM05D004412 ORTHO05D005316 2.0e-61 239.6 178 65.7
QL12p026683 Quercus lobata HOM05D004412 ORTHO05D005316 8.0e-58 227.6 171 67.8
PGR119G0381 Punica granatum HOM05D004412 ORTHO05D005316 1.4e-57 226.9 141 75.2
SEGI_10498 Sequoiadendron giganteum HOM05D004412 ORTHO05D005316 1.4e-54 216.9 187 59.4
SHI29035 Sapria himalayana HOM05D004412 ORTHO05D005316 1.8e-54 216.5 245 49.8
Nitab4.5_0005515g0010 Nicotiana tabacum HOM05D004412 ORTHO05D005316 2.0e-53 213.0 284 45.1
AagrBONN_evm.TU.Sc2ySwM_362.2756 Anthoceros agrestis HOM05D004412 ORTHO05D005316 7.7e-53 211.1 190 56.3
Pp3c4_27720 Physcomitrium patens HOM05D004412 ORTHO05D005316 1.0e-52 210.7 192 55.2
Pp3c26_15150 Physcomitrium patens HOM05D004412 ORTHO05D005316 5.0e-52 208.4 191 55.5
SMO304G0134 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 4.0e-49 198.7 179 54.2
CARHR002230 Cardamine hirsuta HOM05D004412 ORTHO05D005316 8.9e-49 197.6 190 54.2
CBR_g34735 Chara braunii HOM05D004412 ORTHO05D000002 2.2e-47 193.0 179 53.1
Mapoly0113s0040 Marchantia polymorpha HOM05D004412 ORTHO05D005316 3.5e-45 185.7 190 50.0
SMO119G0015 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 1.8e-41 173.3 174 52.9
unitig_0.g656 Utricularia gibba HOM05D004412 ORTHO05D005316 2.2e-39 166.4 114 69.3
Nitab4.5_0001756g0260 Nicotiana tabacum HOM05D004412 ORTHO05D005316 1.6e-37 160.2 103 74.8
Cc01_g20710 Coffea canephora HOM05D004412 ORTHO05D005316 2.8e-34 149.4 95 73.7
Nitab4.5_0002469g0010 Nicotiana tabacum HOM05D004412 ORTHO05D005316 5.2e-33 145.2 197 45.2
MD11G1034700 Malus domestica HOM05D004412 ORTHO05D005316 8.3e-31 137.9 173 50.3
Cre01.g040050 Chlamydomonas reinhardtii HOM05D004412 ORTHO05D005316 9.2e-30 134.4 193 41.5
MCO04G072 Micromonas commoda HOM05D004412 ORTHO05D005316 4.0e-25 119.0 207 32.9
PRCOL_00001679 Prasinoderma coloniale HOM05D004412 ORTHO05D005316 2.2e-23 113.2 200 34.0
Lj1g0003703 Lotus japonicus HOM05D004412 ORTHO05D005316 5.1e-20 102.1 69 68.1
MD02G1044100 Malus domestica HOM05D004412 ORTHO05D005316 7.3e-19 98.2 52 88.5
MD06G1023300 Malus domestica HOM05D004412 ORTHO05D005316 7.3e-19 98.2 52 88.5
Nitab4.5_0001756g0180 Nicotiana tabacum HOM05D004412 ORTHO05D005316 9.6e-19 97.8 69 65.2
Carub.0033s0005 Capsella rubella HOM05D004412 ORTHO05D005316 2.8e-18 96.3 69 62.3
Nitab4.5_0001756g0250 Nicotiana tabacum HOM05D004412 ORTHO05D005316 3.4e-16 89.4 69 59.4
FAN16G1537 Fragaria x ananassa HOM05D004412 ORTHO05D005316 1.7e-15 87.0 60 70.0
BcaC05g24583 Brassica carinata HOM05D004412 ORTHO05D005316 4.9e-15 85.5 55 74.5
SMO304G0108 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 1.1e-14 84.3 94 46.8
Nitab4.5_0000619g0170 Nicotiana tabacum HOM05D004412 ORTHO05D005316 4.2e-14 82.4 69 58.0
SMO304G0017 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 1.1e-11 74.3 92 42.4
BcaB01g01260 Brassica carinata HOM05D004412 ORTHO05D093464 5.3e-09 65.5 55 56.4
AL4G43830 Arabidopsis lyrata HOM05D004412 ORTHO05D005316 1.5e-08 63.9 35 82.9
Nn1g04358 Nelumbo nucifera HOM05D004412 ORTHO05D005316 2.4e-06 56.6 40 60.0
MD02G1044000 Malus domestica HOM05D004412 ORTHO05D005316 4.2e-06 55.8 39 64.1
MD06G1023200 Malus domestica HOM05D004412 ORTHO05D005316 4.2e-06 55.8 39 64.1


User provided reference genes

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