Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C015352.2 Cucumis melo HOM05D004870 ORTHO05D006061 8.9e-204 713.4 360 100.0
CsaV3_1G039280 Cucumis sativus L. HOM05D004870 ORTHO05D006061 1.6e-184 649.4 330 97.9
ClCG01G008090 Citrullus lanatus HOM05D004870 ORTHO05D006061 6.0e-176 620.9 330 93.6
CsaV3_5G020740 Cucumis sativus L. HOM05D004870 ORTHO05D006061 1.6e-173 612.8 330 92.1
MELO3C005067.2 Cucumis melo HOM05D004870 ORTHO05D006061 8.1e-173 610.5 330 92.1
Sed0016006 Sechium edule HOM05D004870 ORTHO05D006061 5.5e-169 597.8 330 92.1
Glyma.10G286200 Glycine max HOM05D004870 ORTHO05D006061 1.3e-154 550.1 330 83.9
VMungo0720G1992 Vigna mungo HOM05D004870 ORTHO05D006061 2.2e-154 549.3 330 83.9
Prupe.4G061300 Prunus persica HOM05D004870 ORTHO05D006061 3.2e-153 545.4 330 82.7
Phvul.007G014700 Phaseolus vulgaris HOM05D004870 ORTHO05D006061 5.5e-153 544.7 330 83.0
Cfa008769 Carpinus fangiana HOM05D004870 ORTHO05D006061 7.2e-153 544.3 330 82.7
CiPaw.05G171200 Carya illinoinensis HOM05D004870 ORTHO05D006061 9.4e-153 543.9 330 82.4
Glyma.20G103100 Glycine max HOM05D004870 ORTHO05D006061 2.7e-152 542.3 330 83.0
Eucgr.I02621 Eucalyptus grandis HOM05D004870 ORTHO05D006061 3.6e-152 542.0 330 83.0
TAR629G3247 Trochodendron aralioides HOM05D004870 ORTHO05D006061 7.9e-152 540.8 330 82.7
Medtr1g114530 Medicago truncatula HOM05D004870 ORTHO05D006061 1.4e-151 540.0 330 82.7
Potri.005G089700 Populus trichocarpa HOM05D004870 ORTHO05D006061 1.4e-151 540.0 332 81.9
Manes.15G107800 Manihot esculenta HOM05D004870 ORTHO05D006061 6.7e-151 537.7 330 82.4
Ca_11257_v3 Cicer arietinum L. HOM05D004870 ORTHO05D006061 8.8e-151 537.3 330 83.0
TPR.G4052 Trifolium pratense HOM05D004870 ORTHO05D006061 1.1e-150 537.0 330 82.1
Thecc.02G155600 Theobroma cacao HOM05D004870 ORTHO05D006061 2.5e-150 535.8 330 82.1
Haze_11781 Corylus avellana HOM05D004870 ORTHO05D006061 7.4e-150 534.3 338 80.8
Sc06g0006850 Simmondsia chinensis HOM05D004870 ORTHO05D006061 9.7e-150 533.9 302 87.4
Atru.chr11.1102 Acer truncatum HOM05D004870 ORTHO05D006061 2.2e-149 532.7 331 82.8
Atru.chr11.1106 Acer truncatum HOM05D004870 ORTHO05D006061 2.2e-149 532.7 331 82.8
Psat6g233800 Pisum sativum HOM05D004870 ORTHO05D006061 4.8e-149 531.6 330 82.4
Dinv25387 Davidia involucrata HOM05D004870 ORTHO05D006061 8.2e-149 530.8 301 88.0
Lj5g0006106 Lotus japonicus HOM05D004870 ORTHO05D006061 8.2e-149 530.8 330 80.6
MD05G1301200 Malus domestica HOM05D004870 ORTHO05D006061 1.8e-148 529.6 330 81.5
Nn3g18601 Nelumbo nucifera HOM05D004870 ORTHO05D006061 2.4e-148 529.3 330 80.9
MBI03_g13828_MAGBIO Magnolia biondii HOM05D004870 ORTHO05D006061 4.1e-148 528.5 330 80.0
arahy.Tifrunner.gnm1.ann1.GVRL8L Arachis hypogaea HOM05D004870 ORTHO05D006061 6.9e-148 527.7 332 80.1
Dinv17644 Davidia involucrata HOM05D004870 ORTHO05D006061 6.9e-148 527.7 338 80.2
RcHm_v2.0_Chr5g0010781 Rosa chinensis HOM05D004870 ORTHO05D006061 6.9e-148 527.7 334 80.5
arahy.Tifrunner.gnm1.ann1.NQ58Z6 Arachis hypogaea HOM05D004870 ORTHO05D006061 9.1e-148 527.3 332 80.1
Actinidia04336 Actinidia chinensis HOM05D004870 ORTHO05D006061 2.6e-147 525.8 308 85.1
FvH4_3g07800 Fragaria vesca HOM05D004870 ORTHO05D006061 2.6e-147 525.8 336 80.1
FAN25G2081 Fragaria x ananassa HOM05D004870 ORTHO05D006061 3.4e-147 525.4 336 80.1
COL.COLO4_33098 Corchorus olitorius HOM05D004870 ORTHO05D006061 4.5e-147 525.0 330 80.9
MD10G1280100 Malus domestica HOM05D004870 ORTHO05D006061 7.7e-147 524.2 330 80.9
Lalb_Chr02g0143631 Lupinus albus HOM05D004870 ORTHO05D006061 1.0e-146 523.9 326 81.0
Duzib132G1043 Durio zibethinus HOM05D004870 ORTHO05D006061 1.3e-146 523.5 330 79.7
QL03p045749 Quercus lobata HOM05D004870 ORTHO05D006061 1.3e-146 523.5 327 81.7
TWI74G1525 Tripterygium wilfordii HOM05D004870 ORTHO05D006061 1.3e-146 523.5 330 80.0
DCAR_026881 Daucus carota HOM05D004870 ORTHO05D006061 1.7e-146 523.1 310 83.9
Ciclev10031476m.g Citrus clementina HOM05D004870 ORTHO05D006061 2.2e-146 522.7 335 80.6
FAN16G1105 Fragaria x ananassa HOM05D004870 ORTHO05D006061 2.2e-146 522.7 336 79.5
CSS0023232 Camellia sinensis var. sinensis HOM05D004870 ORTHO05D006061 2.9e-146 522.3 301 86.0
PGR142G2596 Punica granatum HOM05D004870 ORTHO05D006061 2.9e-146 522.3 339 79.6
CAN.G282.44 Capsicum annuum HOM05D004870 ORTHO05D006061 6.5e-146 521.2 325 80.3
FAN11G2678 Fragaria x ananassa HOM05D004870 ORTHO05D006061 6.5e-146 521.2 336 79.5
Sabra05G0073800 Salix brachista HOM05D004870 ORTHO05D006061 1.9e-145 519.6 350 77.1
FAN21G1781 Fragaria x ananassa HOM05D004870 ORTHO05D006061 4.2e-145 518.5 336 79.2
Gohir.D02G189300 Gossypium hirsutum HOM05D004870 ORTHO05D006061 5.5e-145 518.1 331 79.2
Gorai.005G212000 Gossypium raimondii HOM05D004870 ORTHO05D006061 5.5e-145 518.1 331 79.2
Solyc01g008290.3 Solanum lycopersicum HOM05D004870 ORTHO05D006061 5.5e-145 518.1 325 79.7
Sopen01g003810 Solanum pennellii HOM05D004870 ORTHO05D006061 5.5e-145 518.1 325 79.7
Gohir.A03G166000 Gossypium hirsutum HOM05D004870 ORTHO05D006061 7.2e-145 517.7 331 79.2
Lsat_1_v5_gn_1_81660 Lactuca sativa HOM05D004870 ORTHO05D006061 1.2e-144 516.9 308 83.4
THA.LOC104800685 Tarenaya hassleriana HOM05D004870 ORTHO05D006061 2.1e-144 516.2 301 84.4
QL06p048547 Quercus lobata HOM05D004870 ORTHO05D006061 3.6e-144 515.4 330 79.1
PGSC0003DMG401016396 Solanum tuberosum HOM05D004870 ORTHO05D006061 3.6e-144 515.4 328 78.4
TWI53G0925 Tripterygium wilfordii HOM05D004870 ORTHO05D006061 3.6e-144 515.4 330 80.3
HanXRQChr01g0018971 Helianthus annuus HOM05D004870 ORTHO05D006061 4.7e-144 515.0 307 84.4
Peaxi162Scf00021g02316 Petunia axillaris HOM05D004870 ORTHO05D006061 1.0e-143 513.8 293 86.3
PSO782G4799 Papaver somniferum HOM05D004870 ORTHO05D006061 2.3e-143 512.7 338 76.6
ECA234G2132 Erigeron canadensis HOM05D004870 ORTHO05D006061 3.0e-143 512.3 329 77.5
Duzib248G0882 Durio zibethinus HOM05D004870 ORTHO05D006061 4.4e-142 508.4 332 77.7
PSO063G7087 Papaver somniferum HOM05D004870 ORTHO05D006061 7.4e-142 507.7 337 76.3
Thhalv10004171m.g Eutrema salsugineum HOM05D004870 ORTHO05D006061 2.8e-141 505.8 328 77.7
BraA09t36349Z Brassica rapa HOM05D004870 ORTHO05D006061 3.7e-141 505.4 326 77.9
Rhsim09G0069200 Rhododendron simsii HOM05D004870 ORTHO05D006061 4.8e-141 505.0 286 86.4
CDE05G3274 Ceratophyllum demersum HOM05D004870 ORTHO05D006061 8.2e-141 504.2 330 76.7
ATR0618G304 Amborella trichopoda HOM05D004870 ORTHO05D006061 2.4e-140 502.7 331 77.3
A09p07010 Brassica napus HOM05D004870 ORTHO05D006061 2.4e-140 502.7 326 77.6
CARHR190240 Cardamine hirsuta HOM05D004870 ORTHO05D006061 3.1e-140 502.3 329 77.2
Sp2g23850 Schrenkiella parvula HOM05D004870 ORTHO05D006061 4.1e-140 501.9 328 77.1
Cc11_g00600 Coffea canephora HOM05D004870 ORTHO05D006061 7.0e-140 501.1 293 85.0
DCAR_002602 Daucus carota HOM05D004870 ORTHO05D006061 7.0e-140 501.1 318 79.9
C07p44260 Brassica napus HOM05D004870 ORTHO05D006061 1.2e-139 500.4 299 82.6
BolC7t44949H Brassica oleracea HOM05D004870 ORTHO05D006061 1.2e-139 500.4 299 82.6
AT5G23300 Arabidopsis thaliana HOM05D004870 ORTHO05D006061 2.0e-139 499.6 328 76.8
A06p34260 Brassica napus HOM05D004870 ORTHO05D006061 2.6e-139 499.2 299 82.6
BraA06t26358Z Brassica rapa HOM05D004870 ORTHO05D006061 2.6e-139 499.2 299 82.6
AL6G34560 Arabidopsis lyrata HOM05D004870 ORTHO05D006061 4.5e-139 498.4 328 76.8
SGA_v2.0_scaffold91G28011 Striga asiatica HOM05D004870 ORTHO05D006061 7.7e-139 497.7 293 84.3
Aqoxy5G04369 Aquilegia oxysepala HOM05D004870 ORTHO05D006061 1.0e-138 497.3 287 85.4
Carub.0006s2107 Capsella rubella HOM05D004870 ORTHO05D006061 1.3e-138 496.9 328 76.5
PSO339G5988 Papaver somniferum HOM05D004870 ORTHO05D006061 1.3e-138 496.9 337 74.8
Aa31LG11G2760 Aethionema arabicum HOM05D004870 ORTHO05D006061 2.2e-138 496.1 333 77.2
SalBow5G5328 Salvia bowleyana HOM05D004870 ORTHO05D006061 2.2e-138 496.1 306 81.7
C09p07820 Brassica napus HOM05D004870 ORTHO05D006061 2.9e-138 495.7 330 76.7
BolC9t53698H Brassica oleracea HOM05D004870 ORTHO05D006061 2.9e-138 495.7 330 76.7
HPP92_014771 Vanilla planifolia HOM05D004870 ORTHO05D006061 3.8e-138 495.4 301 81.7
GSVIVG01026142001 Vitis vinifera HOM05D004870 ORTHO05D006061 5.0e-138 495.0 335 77.3
Ah.08g211980 Amaranthus hybridus HOM05D004870 ORTHO05D006061 3.2e-137 492.3 286 85.0
Hund08594 Selenicereus undatus HOM05D004870 ORTHO05D006061 3.2e-137 492.3 340 75.0
EL10Ac7g17331 Beta vulgaris HOM05D004870 ORTHO05D006061 2.1e-136 489.6 286 86.4
Os04g0676300 Oryza sativa ssp. japonica HOM05D004870 ORTHO05D006061 6.1e-136 488.0 340 72.4
SGA_v2.0_scaffold428G51528 Striga asiatica HOM05D004870 ORTHO05D006061 8.0e-136 487.6 306 80.4
Migut.N00083 Erythranthe guttata HOM05D004870 ORTHO05D006061 3.0e-135 485.7 295 81.4
Zm00001eb433680 Zea mays HOM05D004870 ORTHO05D006061 8.8e-135 484.2 338 72.2
vmacro15993 Vaccinium macrocarpon HOM05D004870 ORTHO05D006061 5.9e-131 471.5 396 64.1
Oeu063362.5 Olea europaea HOM05D004870 ORTHO05D006061 2.1e-128 463.0 329 73.6
Lj3A847T44 Lonicera japonica HOM05D004870 ORTHO05D006061 4.4e-126 455.3 265 84.5
AUR62030167 Chenopodium quinoa HOM05D004870 ORTHO05D006061 4.8e-125 451.8 260 86.9
AUR62002708 Chenopodium quinoa HOM05D004870 ORTHO05D006061 7.0e-124 448.0 260 86.5
Prupe.6G003700 Prunus persica HOM05D004870 ORTHO05D006061 5.9e-123 444.9 330 71.5
Mapoly0020s0155 Marchantia polymorpha HOM05D004870 ORTHO05D006061 8.5e-122 441.0 333 69.1
HanXRQChr01g0018951 Helianthus annuus HOM05D004870 ORTHO05D006061 1.1e-121 440.7 311 73.3
Lsat_1_v5_gn_1_81640 Lactuca sativa HOM05D004870 ORTHO05D006061 2.1e-120 436.4 293 75.1
Nitab4.5_0000069g0140 Nicotiana tabacum HOM05D004870 ORTHO05D006061 1.8e-119 433.3 294 76.2
Nitab4.5_0006274g0020 Nicotiana tabacum HOM05D004870 ORTHO05D006061 3.0e-119 432.6 293 75.8
SMO351G0256 Selaginella moellendorffii HOM05D004870 ORTHO05D006061 4.0e-119 432.2 287 74.6
BcaC04g23488 Brassica carinata HOM05D004870 ORTHO05D006061 1.8e-116 423.3 331 68.3
Pp3c9_12870 Physcomitrium patens HOM05D004870 ORTHO05D006061 7.0e-116 421.4 284 73.2
BcaB04g19879 Brassica carinata HOM05D004870 ORTHO05D006061 1.6e-115 420.2 330 67.3
unitig_749.g13388 Utricularia gibba HOM05D004870 ORTHO05D006061 6.6e-114 414.8 288 72.9
ECA248G2791 Erigeron canadensis HOM05D004870 ORTHO05D006061 1.5e-113 413.7 310 68.7
SHI28437 Sapria himalayana HOM05D004870 ORTHO05D006061 3.3e-113 412.5 324 66.7
Pp3c15_6200 Physcomitrium patens HOM05D004870 ORTHO05D006061 3.6e-112 409.1 284 72.2
AagrBONN_evm.TU.Sc2ySwM_340.305 Anthoceros agrestis HOM05D004870 ORTHO05D006061 2.2e-109 399.8 275 73.5
Potri.007G074201 Populus trichocarpa HOM05D004870 ORTHO05D006061 3.6e-104 382.5 253 76.7
CDE05G3051 Ceratophyllum demersum HOM05D004870 ORTHO05D006061 8.9e-103 377.9 230 80.9
CBR_g49488 Chara braunii HOM05D004870 ORTHO05D006061 4.4e-94 349.0 302 57.3
CBR_g53542 Chara braunii HOM05D004870 ORTHO05D006061 9.5e-89 331.3 290 57.9
PSO339G2837 Papaver somniferum HOM05D004870 ORTHO05D006061 3.1e-87 326.2 334 53.6
Thecc.02G156000 Theobroma cacao HOM05D004870 ORTHO05D006061 2.9e-77 293.1 173 85.0
Cre03.g199423 Chlamydomonas reinhardtii HOM05D004870 ORTHO05D006061 2.4e-71 273.5 252 56.7
PSO782G3529 Papaver somniferum HOM05D004870 ORTHO05D006061 3.1e-71 273.1 310 51.0
MCO08G060 Micromonas commoda HOM05D004870 ORTHO05D006061 3.6e-64 249.6 294 47.3
SEGI_23530 Sequoiadendron giganteum HOM05D004870 ORTHO05D006061 3.0e-58 229.9 155 71.6
AagrBONN_evm.TU.Sc2ySwM_228.5917 Anthoceros agrestis HOM05D004870 ORTHO05D006061 3.4e-54 216.5 154 69.5
Haze_27018 Corylus avellana HOM05D004870 ORTHO05D006061 8.2e-40 168.7 244 39.3
Ca_29057_v3 Cicer arietinum L. HOM05D004870 ORTHO05D006061 1.7e-37 161.0 255 40.8
Cfa021670 Carpinus fangiana HOM05D004870 ORTHO05D006061 1.8e-31 141.0 264 37.1
C08p27210 Brassica napus HOM05D004870 ORTHO05D006061 2.7e-27 127.1 83 73.5
RcHm_v2.0_Chr5g0064321 Rosa chinensis HOM05D004870 ORTHO05D006061 2.3e-26 124.0 71 87.3
RcHm_v2.0_Chr5g0050031 Rosa chinensis HOM05D004870 ORTHO05D006061 8.0e-19 99.0 52 90.4
Potri.007G074101 Populus trichocarpa HOM05D004870 ORTHO05D006061 1.8e-18 97.8 51 92.2
arahy.Tifrunner.gnm1.ann1.7S4D4S Arachis hypogaea HOM05D004870 ORTHO05D000194 1.3e-13 81.6 61 68.9
PGR142G1834 Punica granatum HOM05D004870 ORTHO05D006061 1.4e-10 71.6 49 75.5
CDE05G3312 Ceratophyllum demersum HOM05D004870 ORTHO05D130477 1.3e-08 65.1 74 48.6
AUR62002710 Chenopodium quinoa HOM05D004870 ORTHO05D138226 2.8e-08 63.9 44 72.7


User provided reference genes

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