Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C015324.2 Cucumis melo HOM05D004082 ORTHO05D004729 0.0e+00 2060.4 977 100.0
CsaV3_1G038970 Cucumis sativus L. HOM05D004082 ORTHO05D004729 0.0e+00 1944.1 978 94.5
ClCG03G016970 Citrullus lanatus HOM05D004082 ORTHO05D004729 0.0e+00 1902.5 977 91.8
Sed0016495 Sechium edule HOM05D004082 ORTHO05D004729 0.0e+00 1823.1 975 87.8
QL03p007071 Quercus lobata HOM05D004082 ORTHO05D004729 0.0e+00 1607.4 968 76.9
Haze_04194 Corylus avellana HOM05D004082 ORTHO05D004729 0.0e+00 1602.4 969 76.6
Manes.08G120500 Manihot esculenta HOM05D004082 ORTHO05D004729 0.0e+00 1602.0 968 77.5
CSS0005144 Camellia sinensis var. sinensis HOM05D004082 ORTHO05D004729 0.0e+00 1600.1 968 77.0
Dinv40289 Davidia involucrata HOM05D004082 ORTHO05D004729 0.0e+00 1595.9 961 77.4
Duzib106G1815 Durio zibethinus HOM05D004082 ORTHO05D004729 0.0e+00 1593.2 968 76.5
CiPaw.07G018100 Carya illinoinensis HOM05D004082 ORTHO05D004729 0.0e+00 1588.5 970 76.5
Thecc.05G302900 Theobroma cacao HOM05D004082 ORTHO05D004729 0.0e+00 1585.5 973 76.0
Gohir.D13G110800 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1584.3 968 75.9
Prupe.6G325300 Prunus persica HOM05D004082 ORTHO05D004729 0.0e+00 1583.5 969 76.4
TAR636G3250 Trochodendron aralioides HOM05D004082 ORTHO05D004729 0.0e+00 1581.2 975 75.2
TWI56G0720 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 0.0e+00 1580.1 970 75.5
Potri.013G021200 Populus trichocarpa HOM05D004082 ORTHO05D004729 0.0e+00 1575.5 968 75.9
Gorai.007G297200 Gossypium raimondii HOM05D004082 ORTHO05D004729 0.0e+00 1574.7 968 75.8
Duzib177G1172 Durio zibethinus HOM05D004082 ORTHO05D004729 0.0e+00 1573.9 971 75.0
CANSAT54G2367 Cannabis sativa HOM05D004082 ORTHO05D004729 0.0e+00 1572.0 973 75.6
Ciclev10000150m.g Citrus clementina HOM05D004082 ORTHO05D004729 0.0e+00 1570.4 977 75.2
Sabra13G0023600 Salix brachista HOM05D004082 ORTHO05D004729 0.0e+00 1568.5 970 75.6
MD12G1218800 Malus domestica HOM05D004082 ORTHO05D004729 0.0e+00 1565.1 971 76.3
PGR031G3794 Punica granatum HOM05D004082 ORTHO05D004729 0.0e+00 1562.4 979 74.6
DCAR_022172 Daucus carota HOM05D004082 ORTHO05D004729 0.0e+00 1560.4 975 74.4
Peaxi162Scf00037g00423 Petunia axillaris HOM05D004082 ORTHO05D004729 0.0e+00 1559.7 968 74.0
Sc16g0008480 Simmondsia chinensis HOM05D004082 ORTHO05D004729 0.0e+00 1558.5 976 73.4
Sopen01g042650 Solanum pennellii HOM05D004082 ORTHO05D004729 0.0e+00 1551.2 964 74.4
Oeu038297.1 Olea europaea HOM05D004082 ORTHO05D004729 0.0e+00 1550.8 974 74.5
FAN05G3196 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1550.0 973 74.4
RcHm_v2.0_Chr3g0454891 Rosa chinensis HOM05D004082 ORTHO05D004729 0.0e+00 1543.9 963 74.2
PGSC0003DMG401024737 Solanum tuberosum HOM05D004082 ORTHO05D004729 0.0e+00 1543.9 965 74.0
Eucgr.H04490 Eucalyptus grandis HOM05D004082 ORTHO05D004729 0.0e+00 1542.7 972 73.8
GSVIVG01000073001 Vitis vinifera HOM05D004082 ORTHO05D004729 0.0e+00 1542.7 970 74.3
Lj5g0001168 Lotus japonicus HOM05D004082 ORTHO05D004729 0.0e+00 1541.9 971 74.4
FAN05G5148 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1539.6 973 74.2
Solyc01g099090.3 Solanum lycopersicum HOM05D004082 ORTHO05D004729 0.0e+00 1537.3 966 73.5
Glyma.19G235500 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1535.0 970 73.9
FvH4_6g05900 Fragaria vesca HOM05D004082 ORTHO05D004729 0.0e+00 1533.5 968 74.0
Phvul.006G092100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1533.1 970 74.3
Medtr7g113570 Medicago truncatula HOM05D004082 ORTHO05D004729 0.0e+00 1531.5 970 73.6
Lj5C472G3 Lonicera japonica HOM05D004082 ORTHO05D004729 0.0e+00 1529.6 965 74.2
Aqoxy5G00500 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 0.0e+00 1529.2 968 73.9
EL10Ac4g09354 Beta vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1528.5 976 73.1
Psat3g011080 Pisum sativum HOM05D004082 ORTHO05D004729 0.0e+00 1526.9 975 73.6
Phvul.007G180100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1525.8 970 73.6
Lj5C530G2 Lonicera japonica HOM05D004082 ORTHO05D004729 0.0e+00 1525.0 965 74.0
Prupe.6G325400 Prunus persica HOM05D004082 ORTHO05D004729 0.0e+00 1525.0 969 73.4
VMungo0540G1737 Vigna mungo HOM05D004082 ORTHO05D004729 0.0e+00 1524.6 968 74.1
Cc02_g33390 Coffea canephora HOM05D004082 ORTHO05D004729 0.0e+00 1521.1 972 73.8
Psat6g151160 Pisum sativum HOM05D004082 ORTHO05D004729 0.0e+00 1521.1 969 73.4
CAN.G1034.45 Capsicum annuum HOM05D004082 ORTHO05D004729 0.0e+00 1519.6 972 72.6
TPR.G6044 Trifolium pratense HOM05D004082 ORTHO05D004729 0.0e+00 1518.4 974 73.3
Lalb_Chr18g0045631 Lupinus albus HOM05D004082 ORTHO05D004729 0.0e+00 1516.1 969 73.0
Ah.06g189390 Amaranthus hybridus HOM05D004082 ORTHO05D004729 0.0e+00 1515.0 972 73.0
TPR.G33180 Trifolium pratense HOM05D004082 ORTHO05D004729 0.0e+00 1515.0 972 72.7
FAN14G3006 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1514.6 957 74.1
DCAR_003333 Daucus carota HOM05D004082 ORTHO05D004729 0.0e+00 1514.2 969 73.2
VMungo0720G1572 Vigna mungo HOM05D004082 ORTHO05D004729 0.0e+00 1514.2 970 72.9
SalBow3G1583 Salvia bowleyana HOM05D004082 ORTHO05D004729 0.0e+00 1513.4 976 72.2
Lj1g0013013 Lotus japonicus HOM05D004082 ORTHO05D004729 0.0e+00 1513.0 971 72.8
Cpa.g.sc48.57 Carica papaya HOM05D004082 ORTHO05D004729 0.0e+00 1512.3 962 73.4
arahy.Tifrunner.gnm1.ann1.0R76NZ Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1508.0 991 70.5
Ca_10110_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 0.0e+00 1504.6 972 72.3
Hund07072 Selenicereus undatus HOM05D004082 ORTHO05D004729 0.0e+00 1503.4 964 72.9
MSTRG.27997 Avicennia marina HOM05D004082 ORTHO05D004729 0.0e+00 1502.6 968 72.3
Glyma.03G238100 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1501.9 994 71.5
arahy.Tifrunner.gnm1.ann1.7P2G6T Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1501.5 985 71.6
Lalb_Chr02g0148261 Lupinus albus HOM05D004082 ORTHO05D004729 0.0e+00 1501.5 975 72.6
Glyma.20G233900 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1501.1 969 72.5
TWI56G1006 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 0.0e+00 1498.8 966 73.1
Medtr1g082890 Medicago truncatula HOM05D004082 ORTHO05D004729 0.0e+00 1498.0 971 72.4
AUR62000827 Chenopodium quinoa HOM05D004082 ORTHO05D004729 0.0e+00 1496.5 975 72.0
arahy.Tifrunner.gnm1.ann1.MMBS5J Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1496.1 986 70.5
Aqoxy2G03354 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 0.0e+00 1494.9 976 70.2
SGA_v2.0_scaffold81G26069 Striga asiatica HOM05D004082 ORTHO05D004729 0.0e+00 1494.6 968 71.0
Migut.N02007 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1493.8 971 72.5
Glyma.10G154400 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1488.8 965 72.3
ECA236G4884 Erigeron canadensis HOM05D004082 ORTHO05D004729 0.0e+00 1488.4 974 70.9
MD12G1218900 Malus domestica HOM05D004082 ORTHO05D004729 0.0e+00 1485.3 969 71.6
arahy.Tifrunner.gnm1.ann1.DUKX6J Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1484.2 985 71.1
vmacro05017 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 0.0e+00 1484.2 973 72.8
THA.LOC104805875 Tarenaya hassleriana HOM05D004082 ORTHO05D004729 0.0e+00 1480.3 978 72.0
FAN09G0543 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1476.8 918 74.6
HanXRQChr02g0046191 Helianthus annuus HOM05D004082 ORTHO05D004729 0.0e+00 1476.5 970 70.9
Zm00001eb287240 Zea mays HOM05D004082 ORTHO05D004729 0.0e+00 1476.1 975 69.6
PSO832G1048 Papaver somniferum HOM05D004082 ORTHO05D004729 0.0e+00 1469.5 978 70.4
Os05g0391500 Oryza sativa ssp. japonica HOM05D004082 ORTHO05D004729 0.0e+00 1463.4 973 69.7
AUR62005147 Chenopodium quinoa HOM05D004082 ORTHO05D004729 0.0e+00 1462.6 966 71.0
RhsimUnG0226200 Rhododendron simsii HOM05D004082 ORTHO05D004729 0.0e+00 1462.2 936 72.8
HPP92_001021 Vanilla planifolia HOM05D004082 ORTHO05D004729 0.0e+00 1462.2 969 70.1
Nitab4.5_0000137g0200 Nicotiana tabacum HOM05D004082 ORTHO05D004729 0.0e+00 1446.4 965 71.2
Lsat_1_v5_gn_9_86081 Lactuca sativa HOM05D004082 ORTHO05D004729 0.0e+00 1444.1 973 69.6
AL1G19440 Arabidopsis lyrata HOM05D004082 ORTHO05D004729 0.0e+00 1438.7 985 68.8
Nn1g02247 Nelumbo nucifera HOM05D004082 ORTHO05D004729 0.0e+00 1437.9 977 69.9
vmacro22529 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 0.0e+00 1436.4 880 75.3
CARHR008900 Cardamine hirsuta HOM05D004082 ORTHO05D004729 0.0e+00 1431.0 980 68.6
C05p07040 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1427.5 981 68.8
BolC5t29459H Brassica oleracea HOM05D004082 ORTHO05D004729 0.0e+00 1427.5 981 68.8
Aa31sc136G30 Aethionema arabicum HOM05D004082 ORTHO05D004729 0.0e+00 1424.1 981 68.2
A06p05830 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1421.4 983 68.1
AT1G09010 Arabidopsis thaliana HOM05D004082 ORTHO05D004729 0.0e+00 1421.0 980 67.8
Sp1g07620 Schrenkiella parvula HOM05D004082 ORTHO05D004729 0.0e+00 1419.4 980 68.2
Gohir.A11G265200 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1415.2 872 74.7
COL.COLO4_13463 Corchorus olitorius HOM05D004082 ORTHO05D004729 0.0e+00 1412.9 1001 68.6
BolC8t48880H Brassica oleracea HOM05D004082 ORTHO05D004729 0.0e+00 1412.1 977 68.7
Migut.B01033 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1411.7 964 68.0
C08p12400 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1409.4 977 68.6
Carub.0001s0833 Capsella rubella HOM05D004082 ORTHO05D004729 0.0e+00 1408.7 980 67.7
A08p34860 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1407.9 971 68.4
BraA08t35397Z Brassica rapa HOM05D004082 ORTHO05D004729 0.0e+00 1406.3 971 68.4
Thhalv10006730m.g Eutrema salsugineum HOM05D004082 ORTHO05D004729 0.0e+00 1396.7 980 68.0
BcaB07g34118 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1387.9 981 67.3
Hund21813 Selenicereus undatus HOM05D004082 ORTHO05D004729 0.0e+00 1387.9 983 65.9
Gohir.D11G275400 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1370.9 845 74.6
Gohir.A13G107600 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1368.6 840 75.0
SHI18140 Sapria himalayana HOM05D004082 ORTHO05D004729 0.0e+00 1354.0 997 63.3
arahy.Tifrunner.gnm1.ann1.HF1TD9 Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1335.9 770 78.3
BcaC07g38468 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1333.2 977 65.7
unitig_52.g17387 Utricularia gibba HOM05D004082 ORTHO05D004729 0.0e+00 1321.6 979 63.8
BcaC07g38465 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1315.1 981 65.4
BcaC05g24752 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1291.2 981 64.2
BraA06t23793Z Brassica rapa HOM05D004082 ORTHO05D004729 0.0e+00 1227.6 855 66.8
Gorai.013G124100 Gossypium raimondii HOM05D004082 ORTHO05D004729 0.0e+00 1214.5 759 74.2
Migut.O00505 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1203.3 790 71.4
Ca_09358_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 0.0e+00 1196.4 783 71.5
ATR0626G266 Amborella trichopoda HOM05D004082 ORTHO05D004729 0.0e+00 1192.9 802 69.3
Mapoly0034s0073 Marchantia polymorpha HOM05D004082 ORTHO05D004729 0.0e+00 1080.9 984 54.4
SMO367G0677 Selaginella moellendorffii HOM05D004082 ORTHO05D004729 1.2e-303 1046.6 966 53.7
CDE05G1313 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 1.6e-300 1036.2 683 71.2
Pp3c8_17060 Physcomitrium patens HOM05D004082 ORTHO05D004729 7.4e-285 984.2 978 52.1
Lj9A80G16 Lonicera japonica HOM05D004082 ORTHO05D004729 3.6e-284 981.9 705 66.8
Pp3c15_10050 Physcomitrium patens HOM05D004082 ORTHO05D004729 3.3e-269 932.2 975 48.8
AagrBONN_evm.TU.Sc2ySwM_368.1060 Anthoceros agrestis HOM05D004082 ORTHO05D004729 4.5e-266 921.8 978 48.4
CBR_g23107 Chara braunii HOM05D004082 ORTHO05D004729 1.5e-240 837.0 1134 42.2
Nitab4.5_0003227g0010 Nicotiana tabacum HOM05D004082 ORTHO05D004729 4.7e-239 832.0 559 69.8
Nitab4.5_0003227g0030 Nicotiana tabacum HOM05D004082 ORTHO05D004729 2.5e-208 729.9 403 81.1
MBI17_g12862_MAGBIO Magnolia biondii HOM05D004082 ORTHO05D004729 9.7e-136 488.8 279 81.0
QL03p006635 Quercus lobata HOM05D004082 ORTHO05D004729 1.9e-115 421.4 343 59.5
Atru.chr1.88 Acer truncatum HOM05D004082 ORTHO05D004729 1.2e-106 392.1 405 52.1
CAN.G623.33 Capsicum annuum HOM05D004082 ORTHO05D004729 2.3e-105 387.9 377 54.9
Atru.chr2.402 Acer truncatum HOM05D004082 ORTHO05D004729 4.5e-101 373.6 217 81.1
Gorai.013G124200 Gossypium raimondii HOM05D004082 ORTHO05D004729 2.5e-91 341.3 193 81.3
SEGI_31510 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 1.1e-89 335.9 202 72.3
QL03p006592 Quercus lobata HOM05D004082 ORTHO05D004729 6.6e-84 316.6 275 56.7
SEGI_00836 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 2.8e-74 284.6 159 79.9
Lj9A80G18 Lonicera japonica HOM05D004082 ORTHO05D004729 2.7e-69 268.1 215 60.0
PRCOL_00002375 Prasinoderma coloniale HOM05D004082 ORTHO05D004729 3.9e-68 264.2 760 29.2
CDE05G2291 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 1.5e-67 262.3 156 73.1
Atru.chr1.89 Acer truncatum HOM05D004082 ORTHO05D004729 2.1e-66 258.5 143 81.1
QL03p006553 Quercus lobata HOM05D004082 ORTHO05D004729 1.9e-51 208.8 419 36.3
arahy.Tifrunner.gnm1.ann1.3W7GTE Arachis hypogaea HOM05D004082 ORTHO05D004729 5.3e-41 174.1 96 78.1
Cfa025543 Carpinus fangiana HOM05D004082 ORTHO05D004729 1.5e-40 172.6 779 23.5
SGA_v2.0_scaffold54G19617 Striga asiatica HOM05D004082 ORTHO05D004729 1.5e-35 156.0 149 53.0
Lj9A80T26 Lonicera japonica HOM05D004082 ORTHO05D004729 1.4e-33 149.4 93 69.9
CDE05G1624 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 1.8e-33 149.1 94 80.9
CAN.G22.21 Capsicum annuum HOM05D004082 ORTHO05D004729 2.4e-33 148.7 150 50.7
Atru.chr2.403 Acer truncatum HOM05D004082 ORTHO05D004729 3.4e-32 144.8 142 54.2
Hund21239 Selenicereus undatus HOM05D004082 ORTHO05D004729 7.2e-30 137.1 164 48.2
CAN.G623.34 Capsicum annuum HOM05D004082 ORTHO05D004729 2.5e-27 128.6 88 67.0
ATR0626G076 Amborella trichopoda HOM05D004082 ORTHO05D004729 7.7e-24 117.1 117 51.3
CBR_g49561 Chara braunii HOM05D000019 ORTHO05D000353 1.7e-23 115.9 183 38.3
VMungo1127G1159 Vigna mungo HOM05D004082 ORTHO05D004729 5.0e-23 114.4 184 37.0
SGA_v2.0_scaffold54G19618 Striga asiatica HOM05D004082 ORTHO05D004729 8.2e-18 97.1 121 46.3
Cfa024522 Carpinus fangiana HOM05D004082 ORTHO05D004729 1.4e-17 96.3 308 26.0
CAN.G2092.2 Capsicum annuum HOM05D004082 ORTHO05D004729 5.3e-17 94.4 114 47.4
QL03p073950 Quercus lobata HOM05D004082 ORTHO05D004729 1.5e-16 92.8 119 46.2
QL03p007034 Quercus lobata HOM05D000125 ORTHO05D000120 1.4e-14 86.3 71 54.9
Hund20275 Selenicereus undatus HOM05D004082 ORTHO05D004729 4.4e-11 74.7 46 67.4
Hma1.2p1_0928F.1_g237760 Hydrangea macrophylla HOM05D004082 ORTHO05D004729 3.7e-10 71.6 49 75.5
Solyc12g038840.2 Solanum lycopersicum HOM05D004082 ORTHO05D004729 4.8e-10 71.2 76 50.0
CSS0034197 Camellia sinensis var. sinensis HOM05D000231 ORTHO05D000132 5.0e-07 61.2 25 96.0
SEGI_10811 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 6.5e-07 60.8 45 66.7


User provided reference genes

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