Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C015277.2 Cucumis melo HOM05D000947 ORTHO05D000079 1.6e-80 303.1 210 100.0
CsaV3_1G038510 Cucumis sativus L. HOM05D000947 ORTHO05D000079 1.4e-52 210.3 191 72.3
ClCG03G017510 Citrullus lanatus HOM05D000947 ORTHO05D000079 2.6e-38 162.9 215 54.4
Sed0021855 Sechium edule HOM05D000947 ORTHO05D000079 2.1e-19 100.1 201 39.3
TWI36G0181 Tripterygium wilfordii HOM05D000947 ORTHO05D000079 3.4e-14 82.8 178 38.2
CiPaw.08G157500 Carya illinoinensis HOM05D000947 ORTHO05D000079 1.3e-13 80.9 186 34.4
TWI12G0164 Tripterygium wilfordii HOM05D000947 ORTHO05D000079 3.8e-13 79.3 181 44.2
Gohir.A13G175000 Gossypium hirsutum HOM05D000947 ORTHO05D000079 6.5e-13 78.6 208 39.4
Gohir.D13G180900 Gossypium hirsutum HOM05D000947 ORTHO05D000079 1.4e-12 77.4 209 39.2
Gorai.013G206400 Gossypium raimondii HOM05D000947 ORTHO05D000079 1.4e-12 77.4 209 39.2
Potri.005G020500 Populus trichocarpa HOM05D000947 ORTHO05D000079 3.2e-12 76.3 178 42.1
Sabra15G0065300 Salix brachista HOM05D000947 ORTHO05D000079 9.4e-12 74.7 180 34.4
Lj1g0012894 Lotus japonicus HOM05D000947 ORTHO05D000079 1.2e-11 74.3 200 40.5
Sabra05G0026500 Salix brachista HOM05D000947 ORTHO05D000079 1.2e-11 74.3 180 45.0
CSS0049513 Camellia sinensis var. sinensis HOM05D000947 ORTHO05D000079 2.7e-11 73.2 199 41.7
Haze_04091 Corylus avellana HOM05D000947 ORTHO05D000079 2.7e-11 73.2 190 38.9
arahy.Tifrunner.gnm1.ann1.4Y7J59 Arachis hypogaea HOM05D000947 ORTHO05D000079 3.6e-11 72.8 204 31.4
Gohir.A13G111375 Gossypium hirsutum HOM05D000947 ORTHO05D000079 4.7e-11 72.4 207 32.4
Gohir.D13G114000 Gossypium hirsutum HOM05D000947 ORTHO05D000079 6.1e-11 72.0 198 37.4
Gorai.013G127900 Gossypium raimondii HOM05D000947 ORTHO05D000079 6.1e-11 72.0 198 37.4
Ca_09303_v3 Cicer arietinum L. HOM05D000947 ORTHO05D000079 7.9e-11 71.6 174 35.1
Duzib106G1584 Durio zibethinus HOM05D000947 ORTHO05D000079 1.4e-10 70.9 207 32.9
PGR083G1724 Punica granatum HOM05D000947 ORTHO05D000079 1.4e-10 70.9 187 33.7
Dinv02069 Davidia involucrata HOM05D000947 ORTHO05D000079 1.8e-10 70.5 202 29.7
Cc02_g34640 Coffea canephora HOM05D000947 ORTHO05D000079 3.0e-10 69.7 194 31.4
Dinv24417 Davidia involucrata HOM05D000947 ORTHO05D000079 3.0e-10 69.7 196 38.3
Sabra08G0149800 Salix brachista HOM05D000947 ORTHO05D000079 5.1e-10 68.9 174 31.6
Actinidia13373 Actinidia chinensis HOM05D000947 ORTHO05D000079 1.1e-09 67.8 199 31.2
Duzib177G0773 Durio zibethinus HOM05D000947 ORTHO05D000079 1.1e-09 67.8 206 36.9
Duzib212G0811 Durio zibethinus HOM05D000947 ORTHO05D000079 1.1e-09 67.8 174 32.2
Nn4g25675 Nelumbo nucifera HOM05D000947 ORTHO05D000079 1.1e-09 67.8 174 32.2
CAN.G1273.11 Capsicum annuum HOM05D000947 ORTHO05D000079 1.5e-09 67.4 180 34.4
Duzib106G0473 Durio zibethinus HOM05D000947 ORTHO05D000079 1.5e-09 67.4 185 33.0
Potri.002G199800 Populus trichocarpa HOM05D000947 ORTHO05D000079 1.5e-09 67.4 169 32.0
Duzib052G0902 Durio zibethinus HOM05D000947 ORTHO05D000079 2.0e-09 67.0 174 32.2
Medtr7g112330 Medicago truncatula HOM05D000947 ORTHO05D000079 2.0e-09 67.0 195 34.4
QL03p018017 Quercus lobata HOM05D000947 ORTHO05D000079 2.6e-09 66.6 196 42.3
TWI53G1518 Tripterygium wilfordii HOM05D000947 ORTHO05D000079 2.6e-09 66.6 174 32.2
Actinidia14268 Actinidia chinensis HOM05D000947 ORTHO05D000079 4.4e-09 65.9 177 31.1
Dinv44322 Davidia involucrata HOM05D000947 ORTHO05D000079 4.4e-09 65.9 179 30.2
Peaxi162Scf00073g00224 Petunia axillaris HOM05D000947 ORTHO05D000079 7.4e-09 65.1 181 30.9
Atru.chr4.2949 Acer truncatum HOM05D000947 ORTHO05D000079 9.7e-09 64.7 180 35.0
Actinidia35532 Actinidia chinensis HOM05D000947 ORTHO05D000079 9.7e-09 64.7 180 30.0
Hma1.2p1_0078F.1_g040180 Hydrangea macrophylla HOM05D000947 ORTHO05D000079 9.7e-09 64.7 181 33.7
PGSC0003DMG400024783 Solanum tuberosum HOM05D000947 ORTHO05D000079 9.7e-09 64.7 181 33.1
TAR365G0972 Trochodendron aralioides HOM05D000947 ORTHO05D000079 9.7e-09 64.7 172 30.8
TWI73G0953 Tripterygium wilfordii HOM05D000947 ORTHO05D000079 1.3e-08 64.3 174 32.2
CSS0018452 Camellia sinensis var. sinensis HOM05D000947 ORTHO05D000079 1.7e-08 63.9 196 32.1
Duzib151G1181 Durio zibethinus HOM05D000947 ORTHO05D000079 1.7e-08 63.9 174 33.3
Potri.014G124400 Populus trichocarpa HOM05D000947 ORTHO05D000079 1.7e-08 63.9 167 29.3
vmacro08079 Vaccinium macrocarpon HOM05D000947 ORTHO05D000079 1.7e-08 63.9 183 34.4
GSVIVG01031203001 Vitis vinifera HOM05D000947 ORTHO05D000079 1.7e-08 63.9 108 38.9
Ciclev10003698m.g Citrus clementina HOM05D000947 ORTHO05D000079 2.8e-08 63.2 208 35.6
Nitab4.5_0000368g0380 Nicotiana tabacum HOM05D000947 ORTHO05D000079 2.8e-08 63.2 199 32.7
TAR636G3276 Trochodendron aralioides HOM05D000947 ORTHO05D000079 2.8e-08 63.2 174 31.6
VMungo1383G0309 Vigna mungo HOM05D000947 ORTHO05D000079 2.8e-08 63.2 169 32.0
Aqoxy2G02830 Aquilegia oxysepala HOM05D000947 ORTHO05D000079 3.7e-08 62.8 174 37.4
TPR.G1666 Trifolium pratense HOM05D000947 ORTHO05D000079 3.7e-08 62.8 195 33.3
Actinidia40348 Actinidia chinensis HOM05D000947 ORTHO05D000079 4.8e-08 62.4 200 31.5
CSS0047505 Camellia sinensis var. sinensis HOM05D000947 ORTHO05D000079 4.8e-08 62.4 177 32.2
Phvul.001G226500 Phaseolus vulgaris HOM05D000947 ORTHO05D000079 4.8e-08 62.4 171 31.6
Hund03096 Selenicereus undatus HOM05D000947 ORTHO05D000079 4.8e-08 62.4 179 33.5
CAN.G1013.35 Capsicum annuum HOM05D000947 ORTHO05D000079 6.3e-08 62.0 210 30.0
Lsat_1_v5_gn_6_19400 Lactuca sativa HOM05D000947 ORTHO05D000079 6.3e-08 62.0 196 31.6
Lalb_Chr18g0045981 Lupinus albus HOM05D000299 ORTHO05D000079 6.3e-08 62.0 177 31.6
QL06p011255 Quercus lobata HOM05D000947 ORTHO05D000079 6.3e-08 62.0 185 31.4
Solyc01g100220.3 Solanum lycopersicum HOM05D000947 ORTHO05D000079 6.3e-08 62.0 177 32.2
CSS0044519 Camellia sinensis var. sinensis HOM05D000947 ORTHO05D000079 8.2e-08 61.6 173 30.6
Haze_01093 Corylus avellana HOM05D000947 ORTHO05D000079 8.2e-08 61.6 203 30.0
C01p47310 Brassica napus HOM05D000947 ORTHO05D000079 1.1e-07 61.2 181 33.1
BolC1t04701H Brassica oleracea HOM05D000947 ORTHO05D000079 1.1e-07 61.2 181 33.1
CiPaw.01G142600 Carya illinoinensis HOM05D000947 ORTHO05D000079 1.1e-07 61.2 174 29.3
COL.COLO4_04128 Corchorus olitorius HOM05D000947 ORTHO05D000079 1.1e-07 61.2 210 34.8
Glyma.03G232900 Glycine max HOM05D000299 ORTHO05D000079 1.1e-07 61.2 70 44.3
Gorai.005G065300 Gossypium raimondii HOM05D000947 ORTHO05D000079 1.1e-07 61.2 174 30.5
Lalb_Chr13g0298321 Lupinus albus HOM05D000947 ORTHO05D000079 1.1e-07 61.2 174 31.0
arahy.Tifrunner.gnm1.ann1.D56WMI Arachis hypogaea HOM05D000947 ORTHO05D000079 1.4e-07 60.8 190 36.3
BcaC09g48646 Brassica carinata HOM05D000947 ORTHO05D000079 1.4e-07 60.8 181 33.1
A03p39980 Brassica napus HOM05D000947 ORTHO05D000079 1.4e-07 60.8 180 32.2
PSO170G2932 Papaver somniferum HOM05D000947 ORTHO05D000079 1.4e-07 60.8 191 39.3
PSO357G0116 Papaver somniferum HOM05D000947 ORTHO05D000079 1.4e-07 60.8 191 39.3
Psat0s2521g0040 Pisum sativum HOM05D000947 ORTHO05D000079 1.4e-07 60.8 86 40.7
Actinidia15578 Actinidia chinensis HOM05D000947 ORTHO05D000079 1.8e-07 60.5 172 33.1
Aa31LG11G7830 Aethionema arabicum HOM05D000947 ORTHO05D000079 1.8e-07 60.5 176 34.1
Aa31LG11G9760 Aethionema arabicum HOM05D000947 ORTHO05D000079 1.8e-07 60.5 70 42.9
BraA01t03796Z Brassica rapa HOM05D000947 ORTHO05D000079 1.8e-07 60.5 179 33.5
Cpa.g.sc48.133 Carica papaya HOM05D000947 ORTHO05D000079 1.8e-07 60.5 82 40.2
Cfa015476 Carpinus fangiana HOM05D000947 ORTHO05D000079 1.8e-07 60.5 203 29.6
Glyma.19G229900 Glycine max HOM05D000947 ORTHO05D000079 1.8e-07 60.5 75 42.7
Rhsim02G0006100 Rhododendron simsii HOM05D000947 ORTHO05D000079 1.8e-07 60.5 174 30.5
Aa31LG5G17330 Aethionema arabicum HOM05D000947 ORTHO05D000079 2.4e-07 60.1 182 29.7
FvH4_4g19260 Fragaria vesca HOM05D000947 ORTHO05D000079 2.4e-07 60.1 194 28.9
FAN12G1806 Fragaria x ananassa HOM05D000947 ORTHO05D000079 2.4e-07 60.1 194 28.9
FAN12G3889 Fragaria x ananassa HOM05D000947 ORTHO05D000079 2.4e-07 60.1 194 28.9
THA.LOC104820276 Tarenaya hassleriana HOM05D000947 ORTHO05D000079 2.4e-07 60.1 179 34.1
TWI09G0287 Tripterygium wilfordii HOM05D000947 ORTHO05D000079 2.4e-07 60.1 174 31.6
Carub.0006s2455 Capsella rubella HOM05D000299 ORTHO05D000079 3.1e-07 59.7 66 45.5
CARHR182300 Cardamine hirsuta HOM05D000947 ORTHO05D000079 3.1e-07 59.7 195 30.8
Manes.01G224400 Manihot esculenta HOM05D000947 ORTHO05D000079 3.1e-07 59.7 172 29.1
Manes.15G007100 Manihot esculenta HOM05D000947 ORTHO05D000079 3.1e-07 59.7 174 33.3
SalBow7G3126 Salvia bowleyana HOM05D000947 ORTHO05D000079 3.1e-07 59.7 191 28.8
SalBow8G4529 Salvia bowleyana HOM05D000947 ORTHO05D000079 3.1e-07 59.7 178 40.4
BcaB07g34146 Brassica carinata HOM05D000947 ORTHO05D000079 4.1e-07 59.3 176 32.4
Gohir.D02G057800 Gossypium hirsutum HOM05D000947 ORTHO05D000079 4.1e-07 59.3 174 29.9
Hma1.2p1_0013F.1_g008970 Hydrangea macrophylla HOM05D000947 ORTHO05D000079 4.1e-07 59.3 180 43.3
Lsat_1_v5_gn_6_115200 Lactuca sativa HOM05D000947 ORTHO05D000079 4.1e-07 59.3 173 32.4
Nitab4.5_0002715g0010 Nicotiana tabacum HOM05D000947 ORTHO05D000079 4.1e-07 59.3 198 32.3
Sp2g19650 Schrenkiella parvula HOM05D000947 ORTHO05D000079 4.1e-07 59.3 177 33.3
Thecc.04G294500 Theobroma cacao HOM05D000947 ORTHO05D000079 4.1e-07 59.3 174 30.5
GSVIVG01035048001 Vitis vinifera HOM05D000947 ORTHO05D000079 4.1e-07 59.3 169 31.4
Nitab4.5_0003484g0090 Nicotiana tabacum HOM05D000947 ORTHO05D000079 5.3e-07 58.9 174 40.2
AL6G38830 Arabidopsis lyrata HOM05D000299 ORTHO05D000079 7.0e-07 58.5 65 44.6
CANSAT54G2371 Cannabis sativa HOM05D000947 ORTHO05D000079 7.0e-07 58.5 102 36.3
Dinv30862 Davidia involucrata HOM05D000947 ORTHO05D000079 7.0e-07 58.5 82 41.5
Sabra02G0158600 Salix brachista HOM05D000947 ORTHO05D000079 7.0e-07 58.5 205 28.3
Sed0006924 Sechium edule HOM05D000947 ORTHO05D000079 7.0e-07 58.5 176 31.8
BcaB04g18913 Brassica carinata HOM05D000947 ORTHO05D000079 9.1e-07 58.2 180 31.7
A01p37380 Brassica napus HOM05D000947 ORTHO05D000079 9.1e-07 58.2 179 33.0
CARHR186640 Cardamine hirsuta HOM05D000299 ORTHO05D000079 9.1e-07 58.2 65 44.6
CiPaw.02G077400 Carya illinoinensis HOM05D000947 ORTHO05D000079 9.1e-07 58.2 174 31.0
COL.COLO4_34678 Corchorus olitorius HOM05D000947 ORTHO05D000079 9.1e-07 58.2 174 30.5
HanXRQChr02g0049061 Helianthus annuus HOM05D000947 ORTHO05D000079 9.1e-07 58.2 201 29.9
MD16G1159200 Malus domestica HOM05D000947 ORTHO05D000079 9.1e-07 58.2 174 30.5
Sed0004649 Sechium edule HOM05D000947 ORTHO05D000079 9.1e-07 58.2 190 28.9
TPR.G16825 Trifolium pratense HOM05D000947 ORTHO05D000079 9.1e-07 58.2 172 30.2
TAR362G0689 Trochodendron aralioides HOM05D000947 ORTHO05D000079 9.1e-07 58.2 169 28.4
vmacro15201 Vaccinium macrocarpon HOM05D000947 ORTHO05D000079 9.1e-07 58.2 174 31.0
CsaV3_6G022580 Cucumis sativus L. HOM05D000947 ORTHO05D000079 1.2e-06 57.8 174 32.2
Sopen05g032880 Solanum pennellii HOM05D000947 ORTHO05D000079 1.2e-06 57.8 197 36.5
Aa31LG8G3950 Aethionema arabicum HOM05D000947 ORTHO05D000079 1.5e-06 57.4 182 31.3
MELO3C006696.2 Cucumis melo HOM05D000947 ORTHO05D000079 1.5e-06 57.4 174 29.3
Thhalv10005103m.g Eutrema salsugineum HOM05D000947 ORTHO05D000079 1.5e-06 57.4 176 33.0
Gohir.A12G127400 Gossypium hirsutum HOM05D000947 ORTHO05D000079 1.5e-06 57.4 174 29.9
Manes.03G201300 Manihot esculenta HOM05D000947 ORTHO05D000079 1.5e-06 57.4 174 33.3
Phvul.003G110400 Phaseolus vulgaris HOM05D000947 ORTHO05D000079 1.5e-06 57.4 209 29.7
PGSC0003DMG400023434 Solanum tuberosum HOM05D000947 ORTHO05D000079 1.5e-06 57.4 174 35.6
Thecc.05G319600 Theobroma cacao HOM05D000947 ORTHO05D000079 1.5e-06 57.4 101 36.6
vmacro19717 Vaccinium macrocarpon HOM05D000947 ORTHO05D000079 1.5e-06 57.4 179 36.9
Atru.chr5.1064 Acer truncatum HOM05D000947 ORTHO05D000079 2.0e-06 57.0 169 27.8
CsaV3_3G015000 Cucumis sativus L. HOM05D000947 ORTHO05D000079 2.0e-06 57.0 174 29.3
HanXRQChr08g0220821 Helianthus annuus HOM05D000947 ORTHO05D000079 2.0e-06 57.0 87 37.9
Lsat_1_v5_gn_8_166400 Lactuca sativa HOM05D000947 ORTHO05D000079 2.0e-06 57.0 97 37.1
BcaC09g47916 Brassica carinata HOM05D000947 ORTHO05D000079 2.6e-06 56.6 175 30.9
ClCG05G006370 Citrullus lanatus HOM05D000947 ORTHO05D000079 2.6e-06 56.6 174 28.7
ECA236G4712 Erigeron canadensis HOM05D000947 ORTHO05D000079 2.6e-06 56.6 86 38.4
Gohir.D12G130900 Gossypium hirsutum HOM05D000947 ORTHO05D000079 2.6e-06 56.6 70 44.3
Gorai.008G142200 Gossypium raimondii HOM05D000947 ORTHO05D000079 2.6e-06 56.6 70 44.3
MBI18_g04586_MAGBIO Magnolia biondii HOM05D000947 ORTHO05D000079 2.6e-06 56.6 170 31.2
Oeu006436.1 Olea europaea HOM05D000947 ORTHO05D000079 2.6e-06 56.6 175 37.1
Psat0s1646g0400 Pisum sativum HOM05D000947 ORTHO05D000079 2.6e-06 56.6 174 29.9
Sabra10G0001000 Salix brachista HOM05D000947 ORTHO05D000079 2.6e-06 56.6 186 31.2
Duzib138G1540 Durio zibethinus HOM05D000947 ORTHO05D000079 3.5e-06 56.2 79 40.5
MBI18_g05085_MAGBIO Magnolia biondii HOM05D000947 ORTHO05D000079 3.5e-06 56.2 170 31.2
SGA_v2.0_scaffold376G50262 Striga asiatica HOM05D000947 ORTHO05D000079 3.5e-06 56.2 181 30.4
CDE06G0020 Ceratophyllum demersum HOM05D000947 ORTHO05D000079 4.5e-06 55.8 84 35.7
Lalb_Chr12g0200991 Lupinus albus HOM05D000947 ORTHO05D000079 4.5e-06 55.8 174 31.0
Manes.09G174900 Manihot esculenta HOM05D000947 ORTHO05D000079 4.5e-06 55.8 174 43.1
PSO302G0305 Papaver somniferum HOM05D000947 ORTHO05D000079 4.5e-06 55.8 79 41.8
Rhsim04G0231900 Rhododendron simsii HOM05D000947 ORTHO05D000079 4.5e-06 55.8 176 37.5
Solyc05g054400.3 Solanum lycopersicum HOM05D000947 ORTHO05D000079 4.5e-06 55.8 173 37.6
CANSAT78G2367 Cannabis sativa HOM05D000947 ORTHO05D000079 5.9e-06 55.5 174 36.2
CARHR092140 Cardamine hirsuta HOM05D000947 ORTHO05D000079 5.9e-06 55.5 181 35.9
CDE08G1037 Ceratophyllum demersum HOM05D000947 ORTHO05D000079 5.9e-06 55.5 86 36.0
Ciclev10022856m.g Citrus clementina HOM05D000947 ORTHO05D000079 5.9e-06 55.5 174 31.0
MELO3C021288.2 Cucumis melo HOM05D000947 ORTHO05D000079 5.9e-06 55.5 174 31.6
Lj4g0003510 Lotus japonicus HOM05D000947 ORTHO05D000079 5.9e-06 55.5 174 30.5
MD13G1159000 Malus domestica HOM05D000947 ORTHO05D000079 5.9e-06 55.5 174 29.3
SGA_v2.0_scaffold374G50209 Striga asiatica HOM05D000947 ORTHO05D000079 5.9e-06 55.5 179 29.6
AT3G16870 Arabidopsis thaliana HOM05D000947 ORTHO05D000079 7.7e-06 55.1 190 31.6
MSTRG.20393 Avicennia marina HOM05D000947 ORTHO05D000079 7.7e-06 55.1 89 37.1
BolC7t45289H Brassica oleracea HOM05D000947 ORTHO05D000079 7.7e-06 55.1 175 30.9
ClCG06G004790 Citrullus lanatus HOM05D000947 ORTHO05D000079 7.7e-06 55.1 174 29.9
Dinv10059 Davidia involucrata HOM05D000947 ORTHO05D000079 7.7e-06 55.1 192 28.6
Glyma.07G243000 Glycine max HOM05D000947 ORTHO05D000079 7.7e-06 55.1 174 31.0
Glyma.17G030900 Glycine max HOM05D000947 ORTHO05D000079 7.7e-06 55.1 174 30.5
Gohir.A11G111700 Gossypium hirsutum HOM05D000947 ORTHO05D000079 7.7e-06 55.1 95 34.7
Gohir.D11G116833 Gossypium hirsutum HOM05D000947 ORTHO05D000079 7.7e-06 55.1 95 34.7
Gorai.007G125000 Gossypium raimondii HOM05D000947 ORTHO05D000079 7.7e-06 55.1 95 34.7
Nitab4.5_0000570g0300 Nicotiana tabacum HOM05D000947 ORTHO05D000079 7.7e-06 55.1 175 41.1
PSO170G5280 Papaver somniferum HOM05D000947 ORTHO05D000079 7.7e-06 55.1 78 42.3
Prupe.1G126000 Prunus persica HOM05D000947 ORTHO05D000079 7.7e-06 55.1 175 29.7
Zm00001eb063610 Zea mays HOM05D000947 ORTHO05D000079 7.7e-06 55.1 78 35.9


User provided reference genes

Program Settings