Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C015208.2 Cucumis melo HOM05D006389 ORTHO05D007863 0.0e+00 1175.6 569 100.0
CsaV3_1G042620 Cucumis sativus L. HOM05D006389 ORTHO05D007863 7.5e-205 717.6 470 77.9
ClCG03G013410 Citrullus lanatus HOM05D006389 ORTHO05D007863 1.2e-199 700.3 599 64.4
Sed0000566 Sechium edule HOM05D006389 ORTHO05D007863 8.1e-175 617.8 469 68.0
Cfa005620 Carpinus fangiana HOM05D006389 ORTHO05D007863 6.9e-142 508.4 471 56.9
QL01p005900 Quercus lobata HOM05D006389 ORTHO05D007863 2.0e-141 506.9 470 56.0
CiPaw.14G122900 Carya illinoinensis HOM05D006389 ORTHO05D007863 2.3e-137 493.4 470 54.3
Atru.chr3.2543 Acer truncatum HOM05D006389 ORTHO05D007863 3.3e-136 489.6 457 55.6
Manes.06G168100 Manihot esculenta HOM05D006389 ORTHO05D007863 9.6e-136 488.0 457 55.1
Prupe.6G021400 Prunus persica HOM05D006389 ORTHO05D007863 8.4e-132 474.9 461 53.6
Glyma.11G130800 Glycine max HOM05D006389 ORTHO05D007863 1.9e-131 473.8 471 52.0
Potri.001G016800 Populus trichocarpa HOM05D006389 ORTHO05D007863 1.9e-131 473.8 472 52.8
COL.COLO4_24825 Corchorus olitorius HOM05D006389 ORTHO05D007863 2.5e-131 473.4 474 52.7
MD11G1027100 Malus domestica HOM05D006389 ORTHO05D007863 7.9e-130 468.4 463 52.9
FvH4_3g43320 Fragaria vesca HOM05D006389 ORTHO05D007863 1.1e-128 464.5 457 54.7
FAN11G1995 Fragaria x ananassa HOM05D006389 ORTHO05D007863 1.1e-128 464.5 457 54.7
RcHm_v2.0_Chr5g0077431 Rosa chinensis HOM05D006389 ORTHO05D007863 9.7e-128 461.5 465 52.9
GSVIVG01025317001 Vitis vinifera HOM05D006389 ORTHO05D007863 2.4e-126 456.8 474 51.3
Gorai.006G129600 Gossypium raimondii HOM05D006389 ORTHO05D007863 3.1e-126 456.4 470 52.1
Gohir.D09G111800 Gossypium hirsutum HOM05D006389 ORTHO05D007863 4.1e-126 456.1 470 52.1
FAN16G0020 Fragaria x ananassa HOM05D006389 ORTHO05D007863 1.5e-125 454.1 454 54.6
Gohir.A09G115200 Gossypium hirsutum HOM05D006389 ORTHO05D007863 2.2e-124 450.3 457 53.0
FAN25G0313 Fragaria x ananassa HOM05D006389 ORTHO05D007863 6.5e-124 448.7 464 52.6
arahy.Tifrunner.gnm1.ann1.VM78M6 Arachis hypogaea HOM05D006389 ORTHO05D007863 7.2e-123 445.3 464 50.4
Sabra01G0011800 Salix brachista HOM05D006389 ORTHO05D007863 7.2e-123 445.3 312 67.0
Lalb_Chr03g0026221 Lupinus albus HOM05D006389 ORTHO05D007863 1.0e-121 441.4 470 49.8
PSO339G5502 Papaver somniferum HOM05D006389 ORTHO05D007863 6.7e-121 438.7 479 50.7
Phvul.011G057100 Phaseolus vulgaris HOM05D006389 ORTHO05D007863 1.9e-120 437.2 458 49.8
TWI34G0575 Tripterygium wilfordii HOM05D006389 ORTHO05D007863 2.5e-120 436.8 455 49.7
DCAR_023759 Daucus carota HOM05D006389 ORTHO05D007863 7.4e-120 435.3 460 51.1
arahy.Tifrunner.gnm1.ann1.XMKE9J Arachis hypogaea HOM05D006389 ORTHO05D007863 1.7e-119 434.1 464 49.8
TAR623G0704 Trochodendron aralioides HOM05D006389 ORTHO05D007863 1.1e-118 431.4 485 49.9
VMungo1127G1170 Vigna mungo HOM05D006389 ORTHO05D007863 4.5e-117 426.0 524 44.1
Oeu014062.1 Olea europaea HOM05D006389 ORTHO05D007863 6.5e-116 422.2 467 51.0
Cpa.g.sc84.94 Carica papaya HOM05D006389 ORTHO05D007863 2.5e-115 420.2 466 47.2
Actinidia16300 Actinidia chinensis HOM05D006389 ORTHO05D007863 1.6e-114 417.5 456 50.7
CAN.G409.1 Capsicum annuum HOM05D006389 ORTHO05D007863 1.0e-113 414.8 462 48.3
Nn7g36087 Nelumbo nucifera HOM05D006389 ORTHO05D007863 3.0e-113 413.3 467 51.0
AUR62019259 Chenopodium quinoa HOM05D006389 ORTHO05D007863 2.0e-112 410.6 468 47.2
Sopen11g021140 Solanum pennellii HOM05D006389 ORTHO05D007863 2.6e-112 410.2 466 48.3
Cc01_g04330 Coffea canephora HOM05D006389 ORTHO05D007863 6.3e-111 405.6 466 48.5
Migut.N02297 Erythranthe guttata HOM05D006389 ORTHO05D007863 1.1e-110 404.8 448 49.3
PGR102G3332 Punica granatum HOM05D006389 ORTHO05D007863 1.4e-110 404.4 460 48.0
THA.LOC104799096 Tarenaya hassleriana HOM05D006389 ORTHO05D007863 2.4e-110 403.7 470 47.0
SalBow4G3167 Salvia bowleyana HOM05D006389 ORTHO05D007863 2.6e-109 400.2 493 46.2
Nitab4.5_0003250g0030 Nicotiana tabacum HOM05D006389 ORTHO05D007863 7.7e-109 398.7 445 49.9
Medtr4g066000 Medicago truncatula HOM05D006389 ORTHO05D007863 8.5e-108 395.2 467 45.8
Lj3g0001596 Lotus japonicus HOM05D006389 ORTHO05D007863 8.0e-106 388.7 454 46.0
Aqoxy1G00204 Aquilegia oxysepala HOM05D006389 ORTHO05D007863 1.8e-105 387.5 454 47.8
Sc16g0011670 Simmondsia chinensis HOM05D006389 ORTHO05D007863 2.3e-105 387.1 312 57.7
TPR.G13666 Trifolium pratense HOM05D006389 ORTHO05D007863 6.7e-105 385.6 460 45.2
ECA238G3473 Erigeron canadensis HOM05D006389 ORTHO05D007863 2.6e-104 383.6 462 44.8
FAN21G1265 Fragaria x ananassa HOM05D002542 ORTHO05D005078 3.3e-104 383.3 273 67.4
Thecc.09G225900 Theobroma cacao HOM05D006389 ORTHO05D007863 3.3e-104 383.3 375 53.1
HanXRQChr13g0407081 Helianthus annuus HOM05D006389 ORTHO05D007863 5.7e-104 382.5 466 46.4
vmacro04176 Vaccinium macrocarpon HOM05D006389 ORTHO05D007863 7.4e-104 382.1 314 59.2
Hund22074 Selenicereus undatus HOM05D006389 ORTHO05D007863 9.7e-104 381.7 465 44.3
Haze_10646 Corylus avellana HOM05D006389 ORTHO05D007863 2.2e-103 380.6 528 43.2
Rhsim13G0224700 Rhododendron simsii HOM05D006389 ORTHO05D007863 1.1e-102 378.3 448 46.7
Lsat_1_v5_gn_2_101040 Lactuca sativa HOM05D006389 ORTHO05D007863 7.0e-102 375.6 452 47.1
Psat0s3083g0200 Pisum sativum HOM05D006389 ORTHO05D007863 1.6e-101 374.4 468 44.4
AT5G12920 Arabidopsis thaliana HOM05D006389 ORTHO05D007863 5.9e-101 372.5 450 44.4
HanXRQChr14g0453091 Helianthus annuus HOM05D006389 ORTHO05D007863 2.9e-100 370.2 338 55.6
COL.COLO4_26371 Corchorus olitorius HOM05D006389 ORTHO05D007863 1.1e-99 368.2 391 50.1
AL6G23480 Arabidopsis lyrata HOM05D006389 ORTHO05D007863 1.9e-99 367.5 453 43.0
Aa31LG3G14700 Aethionema arabicum HOM05D006389 ORTHO05D007863 3.2e-99 366.7 474 43.0
HanXRQChr14g0455041 Helianthus annuus HOM05D006389 ORTHO05D007863 7.2e-99 365.5 308 57.5
BcaB01g05390 Brassica carinata HOM05D006389 ORTHO05D007863 1.6e-98 364.4 459 42.9
Carub.0006s1110 Capsella rubella HOM05D006389 ORTHO05D007863 1.6e-98 364.4 452 43.1
HPP92_018945 Vanilla planifolia HOM05D006389 ORTHO05D007863 3.6e-98 363.2 455 43.1
C03p06650 Brassica napus HOM05D006389 ORTHO05D007863 1.8e-97 360.9 451 43.2
CARHR200530 Cardamine hirsuta HOM05D006389 ORTHO05D007863 2.3e-97 360.5 455 43.1
A03p05690 Brassica napus HOM05D006389 ORTHO05D007863 1.5e-96 357.8 461 43.0
CDE06G1860 Ceratophyllum demersum HOM05D006389 ORTHO05D007863 4.4e-96 356.3 299 56.2
SalBow4G2322 Salvia bowleyana HOM05D006389 ORTHO05D007863 2.2e-95 354.0 489 43.1
AUR62000087 Chenopodium quinoa HOM05D006389 ORTHO05D007863 2.8e-95 353.6 453 45.3
HanXRQChr13g0407091 Helianthus annuus HOM05D006389 ORTHO05D007863 8.2e-95 352.1 463 44.5
Sp6g31040 Schrenkiella parvula HOM05D006389 ORTHO05D007863 1.4e-94 351.3 455 41.5
Thhalv10015483m.g Eutrema salsugineum HOM05D006389 ORTHO05D007863 1.6e-93 347.8 463 42.3
Dinv36295 Davidia involucrata HOM05D006389 ORTHO05D007863 5.9e-93 345.9 367 51.5
Hma1.2p1_0728F.1_g209350 Hydrangea macrophylla HOM05D006389 ORTHO05D007863 5.9e-93 345.9 256 64.1
SGA_v2.0_scaffold3G01545 Striga asiatica HOM05D006389 ORTHO05D007863 2.2e-92 344.0 466 44.2
BolC3t13171H Brassica oleracea HOM05D006389 ORTHO05D007863 1.6e-90 337.8 511 39.1
Eucgr.B03666 Eucalyptus grandis HOM05D006389 ORTHO05D007863 3.6e-90 336.7 284 58.8
BraA03t09908Z Brassica rapa HOM05D006389 ORTHO05D007863 6.1e-90 335.9 508 39.2
Ah.02g115890 Amaranthus hybridus HOM05D006389 ORTHO05D007863 1.3e-87 328.2 459 39.0
Zm00001eb245730 Zea mays HOM05D006389 ORTHO05D007863 2.2e-87 327.4 465 41.5
ATR0605G326 Amborella trichopoda HOM05D006389 ORTHO05D007863 1.8e-86 324.3 458 40.8
AUR62043581 Chenopodium quinoa HOM05D006389 ORTHO05D007863 2.3e-84 317.4 456 41.9
unitig_699.g19125 Utricularia gibba HOM05D006389 ORTHO05D007863 2.0e-80 304.3 256 55.5
Os02g0591600 Oryza sativa ssp. japonica HOM05D006389 ORTHO05D007863 1.0e-76 292.0 483 37.7
MSTRG.17573 Avicennia marina HOM05D006389 ORTHO05D007863 2.0e-69 267.7 208 59.1
MBI01_g14331_MAGBIO Magnolia biondii HOM05D006389 ORTHO05D007863 4.9e-63 246.5 157 66.9
Pp3c6_27180 Physcomitrium patens HOM05D006389 ORTHO05D007863 1.6e-61 241.5 462 32.9
Ciclev10018279m.g Citrus clementina HOM05D006389 ORTHO05D007863 1.9e-59 234.6 168 64.3
Ca_20580_v3 Cicer arietinum L. HOM05D006389 ORTHO05D007863 2.8e-50 204.1 330 39.1
Mapoly0014s0037 Marchantia polymorpha HOM05D006389 ORTHO05D007863 1.1e-49 202.2 474 30.6
PSO384G2577 Papaver somniferum HOM05D006389 ORTHO05D007863 5.4e-46 189.9 294 42.5
Solyc11g045510.3 Solanum lycopersicum HOM05D006389 ORTHO05D007863 1.6e-45 188.3 277 42.2
Nitab4.5_0000175g0150 Nicotiana tabacum HOM05D006389 ORTHO05D007863 3.9e-44 183.7 282 42.9
SHI30505 Sapria himalayana HOM05D006389 ORTHO05D007863 5.3e-41 173.3 133 60.2
Peaxi162Scf00559g00114 Petunia axillaris HOM05D006389 ORTHO05D007863 1.3e-39 168.7 132 61.4
AagrBONN_evm.TU.Sc2ySwM_228.3166 Anthoceros agrestis HOM05D006389 ORTHO05D007863 8.7e-36 156.0 317 33.4
CSS0004435 Camellia sinensis var. sinensis HOM05D006389 ORTHO05D007863 4.3e-35 153.7 277 38.6
HanXRQChr14g0450961 Helianthus annuus HOM05D006389 ORTHO05D007863 8.1e-34 149.4 191 42.4
Nitab4.5_0000175g0160 Nicotiana tabacum HOM05D006389 ORTHO05D007863 1.2e-32 145.6 132 53.8
CBR_g1099 Chara braunii HOM05D000019 ORTHO05D000002 4.8e-26 123.6 275 30.9
Peaxi162Scf00185g00310 Petunia axillaris HOM05D006389 ORTHO05D007863 5.8e-24 116.7 132 43.2
SHI30507 Sapria himalayana HOM05D006389 ORTHO05D007863 1.0e-20 105.9 91 54.9
CSS0015492 Camellia sinensis var. sinensis HOM05D006389 ORTHO05D007863 5.6e-19 100.1 85 58.8
Psat4g014880 Pisum sativum HOM05D006389 ORTHO05D007863 6.2e-18 96.7 154 39.6
arahy.Tifrunner.gnm1.ann1.RII35Q Arachis hypogaea HOM05D006389 ORTHO05D007863 1.8e-17 95.1 287 27.9
HanXRQChr13g0389161 Helianthus annuus HOM05D006389 ORTHO05D007863 3.4e-16 90.9 53 69.8
Ciclev10016567m.g Citrus clementina HOM05D006389 ORTHO05D007863 2.2e-15 88.2 227 32.2
Hma1.2p1_0728F.1_g209340 Hydrangea macrophylla HOM05D006389 ORTHO05D007863 2.0e-08 65.1 175 30.9
Peaxi162Scf00559g00110 Petunia axillaris HOM05D006389 ORTHO05D007863 2.9e-07 61.2 48 52.1
SEGI_20259 Sequoiadendron giganteum HOM05D006389 ORTHO05D007863 3.8e-07 60.8 56 46.4


User provided reference genes

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