Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C015153.2 Cucumis melo HOM05D005156 ORTHO05D006710 4.1e-179 631.3 331 100.0
CsaV3_1G043140 Cucumis sativus L. HOM05D005156 ORTHO05D006710 1.4e-166 589.7 321 95.6
ClCG03G012920 Citrullus lanatus HOM05D005156 ORTHO05D006710 6.2e-143 511.1 353 81.0
Sed0002302 Sechium edule HOM05D005156 ORTHO05D006710 8.1e-143 510.8 321 85.4
Cfa009832 Carpinus fangiana HOM05D005156 ORTHO05D006710 6.2e-135 484.6 319 80.3
Lj3g0017854 Lotus japonicus HOM05D005156 ORTHO05D006710 3.4e-133 478.8 320 78.1
CiPaw.13G153000 Carya illinoinensis HOM05D005156 ORTHO05D006710 7.6e-133 477.6 320 78.4
Potri.001G254000 Populus trichocarpa HOM05D005156 ORTHO05D006710 1.3e-132 476.9 321 77.9
MD11G1196200 Malus domestica HOM05D005156 ORTHO05D006710 2.2e-132 476.1 321 77.9
TAR626G1548 Trochodendron aralioides HOM05D005156 ORTHO05D006710 3.8e-132 475.3 320 77.8
RcHm_v2.0_Chr5g0050911 Rosa chinensis HOM05D005156 ORTHO05D006710 2.4e-131 472.6 323 78.0
CSS0001612 Camellia sinensis var. sinensis HOM05D005156 ORTHO05D006710 2.7e-130 469.2 319 78.1
CSS0030488 Camellia sinensis var. sinensis HOM05D005156 ORTHO05D006710 3.5e-130 468.8 319 77.7
CANSAT54G2883 Cannabis sativa HOM05D005156 ORTHO05D006710 6.0e-130 468.0 321 78.2
Actinidia16358 Actinidia chinensis HOM05D005156 ORTHO05D006710 7.8e-130 467.6 320 76.9
Hma1.2p1_1115F.1_g258845 Hydrangea macrophylla HOM05D005156 ORTHO05D006710 1.3e-129 466.8 320 77.2
Prupe.4G258300 Prunus persica HOM05D005156 ORTHO05D006710 1.3e-129 466.8 321 76.6
Atru.chr3.2617 Acer truncatum HOM05D005156 ORTHO05D006710 1.7e-129 466.5 321 76.3
FvH4_3g28170 Fragaria vesca HOM05D005156 ORTHO05D006710 3.0e-129 465.7 321 76.3
Thecc.09G243300 Theobroma cacao HOM05D005156 ORTHO05D006710 3.9e-129 465.3 316 76.9
FAN16G2156 Fragaria x ananassa HOM05D005156 ORTHO05D006710 6.6e-129 464.5 321 76.0
GSVIVG01037376001 Vitis vinifera HOM05D005156 ORTHO05D006710 1.1e-128 463.8 319 77.4
Gorai.001G136000 Gossypium raimondii HOM05D005156 ORTHO05D006710 1.9e-128 463.0 321 76.0
QL01p017825 Quercus lobata HOM05D005156 ORTHO05D006710 5.6e-128 461.5 320 77.2
Haze_23195 Corylus avellana HOM05D005156 ORTHO05D006710 9.6e-128 460.7 326 77.0
Gohir.D07G126000 Gossypium hirsutum HOM05D005156 ORTHO05D006710 1.3e-127 460.3 321 75.7
PSO210G1653 Papaver somniferum HOM05D005156 ORTHO05D006710 1.6e-127 459.9 321 75.1
Eucgr.J00726 Eucalyptus grandis HOM05D005156 ORTHO05D006710 2.1e-127 459.5 319 74.6
Gohir.A07G121700 Gossypium hirsutum HOM05D005156 ORTHO05D006710 2.8e-127 459.1 321 75.7
Lalb_Chr10g0094741 Lupinus albus HOM05D005156 ORTHO05D006710 2.8e-127 459.1 323 74.3
MSTRG.18451 Avicennia marina HOM05D005156 ORTHO05D006710 6.2e-127 458.0 320 73.8
Aqoxy8s002 Aquilegia oxysepala HOM05D005156 ORTHO05D006710 8.1e-127 457.6 319 76.5
Sc16g0011170 Simmondsia chinensis HOM05D005156 ORTHO05D006710 1.8e-126 456.4 323 76.2
Glyma.09G002700 Glycine max HOM05D005156 ORTHO05D006710 2.4e-126 456.1 324 74.7
Ciclev10015838m.g Citrus clementina HOM05D005156 ORTHO05D006710 4.0e-126 455.3 291 80.4
PSO210G0499 Papaver somniferum HOM05D005156 ORTHO05D006710 9.0e-126 454.1 321 74.1
Cc01_g05890 Coffea canephora HOM05D005156 ORTHO05D006710 1.2e-125 453.8 316 76.3
Cpa.g.sc84.13 Carica papaya HOM05D005156 ORTHO05D006710 2.6e-125 452.6 321 74.5
AUR62000172 Chenopodium quinoa HOM05D005156 ORTHO05D006710 5.8e-125 451.4 319 74.6
Oeu001490.1 Olea europaea HOM05D005156 ORTHO05D006710 5.8e-125 451.4 320 74.4
EL10Ac4g10175 Beta vulgaris HOM05D005156 ORTHO05D006710 1.1e-123 447.2 318 74.2
TPR.G34160 Trifolium pratense HOM05D005156 ORTHO05D006710 1.1e-123 447.2 320 74.1
Hund21990 Selenicereus undatus HOM05D005156 ORTHO05D006710 4.2e-123 445.3 324 73.8
PGR119G1881 Punica granatum HOM05D005156 ORTHO05D006710 1.2e-122 443.7 318 73.3
Migut.D00644 Erythranthe guttata HOM05D005156 ORTHO05D006710 6.0e-122 441.4 320 74.1
Ah.06g194400 Amaranthus hybridus HOM05D005156 ORTHO05D006710 8.7e-121 437.6 319 72.7
PGSC0003DMG400019760 Solanum tuberosum HOM05D005156 ORTHO05D006710 2.5e-120 436.0 316 74.4
THA.LOC104804468 Tarenaya hassleriana HOM05D005156 ORTHO05D006710 2.5e-120 436.0 319 73.4
Phvul.011G080400 Phaseolus vulgaris HOM05D005156 ORTHO05D006710 7.4e-120 434.5 318 71.1
Solyc11g033260.2 Solanum lycopersicum HOM05D005156 ORTHO05D006710 2.1e-119 433.0 315 74.3
Sopen11g015730 Solanum pennellii HOM05D005156 ORTHO05D006710 3.6e-119 432.2 316 74.1
CAN.G1323.2 Capsicum annuum HOM05D005156 ORTHO05D006710 6.2e-119 431.4 319 73.4
VMungo1383G1089 Vigna mungo HOM05D005156 ORTHO05D006710 1.8e-118 429.9 320 70.6
FAN21G2369 Fragaria x ananassa HOM05D005156 ORTHO05D006710 3.1e-118 429.1 321 71.7
AUR62039839 Chenopodium quinoa HOM05D005156 ORTHO05D006710 5.3e-118 428.3 349 67.6
ECA238G2265 Erigeron canadensis HOM05D005156 ORTHO05D006710 6.9e-118 427.9 320 68.1
Nitab4.5_0006419g0030 Nicotiana tabacum HOM05D005156 ORTHO05D006710 6.9e-118 427.9 322 72.4
Rhsim13G0216600 Rhododendron simsii HOM05D005156 ORTHO05D006710 6.9e-118 427.9 315 73.7
FAN11G0102 Fragaria x ananassa HOM05D005156 ORTHO05D006710 1.2e-117 427.2 321 71.3
FAN25G0057 Fragaria x ananassa HOM05D005156 ORTHO05D006710 4.5e-117 425.2 321 70.7
unitig_90.g27461 Utricularia gibba HOM05D005156 ORTHO05D006710 4.5e-117 425.2 320 70.9
Manes.15G112800 Manihot esculenta HOM05D005156 ORTHO05D006710 5.8e-117 424.9 255 84.7
BcaB02g11155 Brassica carinata HOM05D005156 ORTHO05D006710 7.6e-117 424.5 317 71.3
Psat7g227760 Pisum sativum HOM05D005156 ORTHO05D006710 9.9e-117 424.1 320 70.0
HanXRQChr06g0183211 Helianthus annuus HOM05D005156 ORTHO05D006710 1.7e-116 423.3 313 69.3
Sabra16G0154700 Salix brachista HOM05D005156 ORTHO05D006710 1.7e-116 423.3 282 79.1
AL1G58170 Arabidopsis lyrata HOM05D005156 ORTHO05D006710 2.9e-116 422.5 323 70.3
arahy.Tifrunner.gnm1.ann1.KCM926 Arachis hypogaea HOM05D005156 ORTHO05D006710 6.4e-116 421.4 325 73.2
BcaC05g27410 Brassica carinata HOM05D005156 ORTHO05D006710 6.4e-116 421.4 323 70.0
HPP92_001936 Vanilla planifolia HOM05D005156 ORTHO05D006710 8.4e-116 421.0 285 74.0
A05p20090 Brassica napus HOM05D005156 ORTHO05D006710 1.1e-115 420.6 323 70.9
BraA05t20917Z Brassica rapa HOM05D005156 ORTHO05D006710 1.1e-115 420.6 323 70.9
Carub.0001s3958 Capsella rubella HOM05D005156 ORTHO05D006710 1.9e-115 419.9 323 70.0
Thhalv10011639m.g Eutrema salsugineum HOM05D005156 ORTHO05D006710 1.9e-115 419.9 323 70.0
Os08g0504400 Oryza sativa ssp. japonica HOM05D005156 ORTHO05D006710 1.9e-115 419.9 288 74.3
C05p33580 Brassica napus HOM05D005156 ORTHO05D006710 4.2e-115 418.7 325 70.2
arahy.Tifrunner.gnm1.ann1.9TL5ZW Arachis hypogaea HOM05D005156 ORTHO05D006710 5.5e-115 418.3 325 72.9
BcaB07g33488 Brassica carinata HOM05D005156 ORTHO05D006710 7.1e-115 417.9 326 69.6
BcaC08g43222 Brassica carinata HOM05D005156 ORTHO05D006710 7.1e-115 417.9 326 69.3
BraA06t23519Z Brassica rapa HOM05D005156 ORTHO05D006710 1.2e-114 417.2 328 68.9
CARHR040540 Cardamine hirsuta HOM05D005156 ORTHO05D006710 1.2e-114 417.2 323 69.3
Sp1g37360 Schrenkiella parvula HOM05D005156 ORTHO05D006710 1.2e-114 417.2 326 70.2
ATR0751G133 Amborella trichopoda HOM05D005156 ORTHO05D006710 1.6e-114 416.8 281 76.5
A06p03060 Brassica napus HOM05D005156 ORTHO05D006710 1.6e-114 416.8 329 68.7
AT1G50510 Arabidopsis thaliana HOM05D005156 ORTHO05D006710 3.5e-114 415.6 323 68.7
C06p05700 Brassica napus HOM05D005156 ORTHO05D006710 1.3e-113 413.7 324 68.8
Ca_12758_v3 Cicer arietinum L. HOM05D005156 ORTHO05D006710 3.9e-113 412.1 348 66.4
Peaxi162Scf00473g00218 Petunia axillaris HOM05D005156 ORTHO05D006710 1.1e-112 410.6 349 66.5
BolC5t32085H Brassica oleracea HOM05D005156 ORTHO05D006710 4.8e-111 405.2 346 65.3
Mapoly0048s0046 Marchantia polymorpha HOM05D005156 ORTHO05D006710 2.0e-109 399.8 315 66.3
Aa31LG10G3780 Aethionema arabicum HOM05D005156 ORTHO05D006710 7.6e-109 397.9 303 71.0
vmacro04002 Vaccinium macrocarpon HOM05D005156 ORTHO05D006710 1.7e-108 396.7 378 60.3
Lsat_1_v5_gn_2_29420 Lactuca sativa HOM05D005156 ORTHO05D006710 4.2e-107 392.1 322 64.3
SMO147G0151 Selaginella moellendorffii HOM05D005156 ORTHO05D006710 4.6e-106 388.7 317 65.9
Nitab4.5_0002113g0190 Nicotiana tabacum HOM05D005156 ORTHO05D006710 1.1e-104 384.0 255 77.3
Zm00001eb251060 Zea mays HOM05D005156 ORTHO05D006710 1.9e-104 383.3 248 76.6
Pp3c21_8650 Physcomitrium patens HOM05D005156 ORTHO05D006710 4.3e-104 382.1 325 63.1
DCAR_002091 Daucus carota HOM05D005156 ORTHO05D006710 9.0e-102 374.4 303 67.0
Lj2C655T2 Lonicera japonica HOM05D005156 ORTHO05D006710 9.0e-102 374.4 298 69.1
CDE12G0606 Ceratophyllum demersum HOM05D005156 ORTHO05D006710 1.5e-101 373.6 248 77.4
SHI21395 Sapria himalayana HOM05D005156 ORTHO05D006710 5.0e-100 368.6 274 70.8
Aqoxy4G00402 Aquilegia oxysepala HOM05D005156 ORTHO05D006710 6.5e-100 368.2 290 71.0
Dinv22149 Davidia involucrata HOM05D005156 ORTHO05D006710 4.6e-98 362.1 224 83.9
AagrBONN_evm.TU.Sc2ySwM_368.760 Anthoceros agrestis HOM05D005156 ORTHO05D006710 3.3e-96 355.9 283 65.0
CBR_g12801 Chara braunii HOM05D005156 ORTHO05D006710 1.6e-95 353.6 280 64.6
MCO15G168 Micromonas commoda HOM05D005156 ORTHO05D006710 2.0e-93 346.7 285 61.4
SGA_v2.0_scaffold29G12276 Striga asiatica HOM05D005156 ORTHO05D006710 2.6e-93 346.3 221 80.1
PRCOL_00003626 Prasinoderma coloniale HOM05D005156 ORTHO05D006710 3.3e-88 329.3 293 58.0
Medtr4g031220 Medicago truncatula HOM05D005156 ORTHO05D006710 5.7e-88 328.6 232 75.4
MBI15_g27827_MAGBIO Magnolia biondii HOM05D005156 ORTHO05D006710 1.7e-84 317.0 204 78.4
Hma1.2p1_2309F.1_g319520 Hydrangea macrophylla HOM05D005156 ORTHO05D006710 2.7e-82 309.7 191 82.7
Lj2C684T3 Lonicera japonica HOM05D005156 ORTHO05D006710 3.6e-82 309.3 210 78.1
Cre02.g144000 Chlamydomonas reinhardtii HOM05D005156 ORTHO05D006710 4.5e-77 292.4 252 60.3
BcaB02g11038 Brassica carinata HOM05D005156 ORTHO05D006710 5.3e-70 268.9 208 71.2
SMO273G0012 Selaginella moellendorffii HOM05D005156 ORTHO05D006710 9.1e-70 268.1 192 71.9
BcaB01g01392 Brassica carinata HOM05D005156 ORTHO05D006710 7.5e-64 248.4 207 68.6
Nn1g08054 Nelumbo nucifera HOM05D005156 ORTHO05D006710 2.0e-61 240.4 150 80.7
Cfa025164 Carpinus fangiana HOM05D005156 ORTHO05D006710 1.2e-58 231.1 282 44.7
Nn1g08053 Nelumbo nucifera HOM05D005156 ORTHO05D006710 4.9e-47 192.6 154 67.5
Haze_26247 Corylus avellana HOM05D005156 ORTHO05D006710 2.0e-45 187.2 277 43.0
COL.COLO4_04116 Corchorus olitorius HOM05D005156 ORTHO05D006710 8.0e-42 175.3 147 66.7
Medtr4g031235 Medicago truncatula HOM05D005156 ORTHO05D006710 2.5e-27 127.1 88 73.9
Aqoxy1G04277 Aquilegia oxysepala HOM05D005156 ORTHO05D006710 8.9e-25 118.6 102 65.7
ATR0585G005 Amborella trichopoda HOM05D005156 ORTHO05D006710 1.3e-23 114.8 90 63.3
SMO147G0118 Selaginella moellendorffii HOM05D005156 ORTHO05D006710 2.2e-23 114.0 183 42.6
Oeu016690.1 Olea europaea HOM05D005156 ORTHO05D006710 4.9e-23 112.8 224 37.1
SalBow6G0988 Salvia bowleyana HOM05D005156 ORTHO05D006710 7.1e-22 109.0 79 70.9
SMO164G0249 Selaginella moellendorffii HOM05D005156 ORTHO05D006710 3.5e-21 106.7 118 55.9
EL10Ac8g19800 Beta vulgaris HOM05D005156 ORTHO05D006710 6.0e-21 105.9 101 57.4
MELO3C033715.2 Cucumis melo HOM05D005156 ORTHO05D006710 6.0e-21 105.9 61 85.2
MELO3C034160.2 Cucumis melo HOM05D005156 ORTHO05D006710 6.0e-21 105.9 62 85.5
MELO3C030656.2 Cucumis melo HOM05D005156 ORTHO05D006710 1.0e-20 105.1 62 87.1
MELO3C034654.2 Cucumis melo HOM05D005156 ORTHO05D006710 2.3e-20 104.0 62 87.1
SMO147G0310 Selaginella moellendorffii HOM05D000066 ORTHO05D373802 2.8e-18 97.1 87 59.8
EL10Ac2g04378 Beta vulgaris HOM05D005156 ORTHO05D006710 4.7e-18 96.3 84 54.8
EL10Ac3g06833 Beta vulgaris HOM05D005156 ORTHO05D006710 6.2e-18 95.9 81 55.6
MELO3C016526.2 Cucumis melo HOM05D005156 ORTHO05D006710 5.2e-17 92.8 55 87.3
MELO3C030457.2 Cucumis melo HOM05D005156 ORTHO05D006710 5.2e-17 92.8 56 85.7
SEGI_37101 Sequoiadendron giganteum HOM05D005156 ORTHO05D006710 8.9e-17 92.0 64 70.3
Hma1.2p1_1115F.1_g258870 Hydrangea macrophylla HOM05D005156 ORTHO05D006710 9.6e-11 72.0 37 89.2
EL10Ac2g02892 Beta vulgaris HOM05D005156 ORTHO05D039042 1.8e-09 67.8 42 76.2
EL10As2g23197 Beta vulgaris HOM05D005156 ORTHO05D039042 1.2e-08 65.1 40 77.5
EL10Ac8g20129 Beta vulgaris HOM05D005156 ORTHO05D000004 2.6e-08 63.9 35 85.7
EL10Ac9g22728 Beta vulgaris HOM05D005156 ORTHO05D000004 2.6e-08 63.9 35 85.7
Rhsim05G0077000 Rhododendron simsii HOM05D003003 ORTHO05D008343 2.2e-07 60.8 43 72.1
MELO3C034994.2 Cucumis melo HOM05D064854 ORTHO05D170439 2.4e-06 57.4 32 90.6
SMO147G0023 Selaginella moellendorffii HOM05D005156 ORTHO05D376049 5.4e-06 56.2 110 36.4


User provided reference genes

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