Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C014951.2 Cucumis melo HOM05D007191 ORTHO05D009370 1.8e-190 669.1 329 100.0
CsaV3_3G006990 Cucumis sativus L. HOM05D007191 ORTHO05D009370 3.6e-183 644.8 329 96.4
ClCG10G008240 Citrullus lanatus HOM05D007191 ORTHO05D009370 1.6e-167 592.8 326 90.2
Sed0016887 Sechium edule HOM05D007191 ORTHO05D009370 3.4e-141 505.4 327 79.5
Dinv13563 Davidia involucrata HOM05D007191 ORTHO05D009370 1.6e-119 433.3 344 66.3
GSVIVG01003951001 Vitis vinifera HOM05D007191 ORTHO05D003232 2.1e-119 433.0 327 67.9
Dinv36956 Davidia involucrata HOM05D007191 ORTHO05D009370 6.2e-119 431.4 342 66.4
QL06p036361 Quercus lobata HOM05D007191 ORTHO05D009370 1.4e-115 420.2 338 66.6
Thhalv10025567m.g Eutrema salsugineum HOM05D007191 ORTHO05D009370 3.2e-115 419.1 292 69.5
BolC1t00117H Brassica oleracea HOM05D007191 ORTHO05D009370 2.1e-114 416.4 290 69.0
Carub.0007s0220 Capsella rubella HOM05D007191 ORTHO05D009370 2.1e-114 416.4 292 69.2
CiPaw.07G045700 Carya illinoinensis HOM05D007191 ORTHO05D009370 2.7e-114 416.0 314 66.9
Sp7g35660 Schrenkiella parvula HOM05D007191 ORTHO05D009370 2.7e-114 416.0 293 68.6
Prupe.6G204900 Prunus persica HOM05D007191 ORTHO05D009370 7.8e-114 414.5 318 66.7
BcaNung00953 Brassica carinata HOM05D007191 ORTHO05D009370 1.3e-113 413.7 290 68.3
BcaNung05371 Brassica carinata HOM05D007191 ORTHO05D009370 3.0e-113 412.5 344 61.0
C01p01190 Brassica napus HOM05D007191 ORTHO05D009370 3.9e-113 412.1 290 68.3
MD01G1041100 Malus domestica HOM05D007191 ORTHO05D009370 5.1e-113 411.8 289 69.9
AL7G12620 Arabidopsis lyrata HOM05D007191 ORTHO05D009370 6.6e-113 411.4 293 68.9
RcHm_v2.0_Chr2g0110691 Rosa chinensis HOM05D007191 ORTHO05D003232 8.7e-113 411.0 330 64.2
Actinidia25299 Actinidia chinensis HOM05D007191 ORTHO05D009370 1.1e-112 410.6 340 63.8
CARHR246430 Cardamine hirsuta HOM05D007191 ORTHO05D009370 1.5e-112 410.2 292 68.8
CSS0046556 Camellia sinensis var. sinensis HOM05D007191 ORTHO05D009370 2.5e-112 409.5 288 71.2
AT4G38020 Arabidopsis thaliana HOM05D007191 ORTHO05D009370 3.3e-112 409.1 291 67.7
FvH4_1g19321 Fragaria vesca HOM05D007191 ORTHO05D009370 3.3e-112 409.1 318 65.1
A01p01070 Brassica napus HOM05D007191 ORTHO05D009370 5.6e-112 408.3 290 67.9
BraA01t00105Z Brassica rapa HOM05D007191 ORTHO05D009370 5.6e-112 408.3 290 67.9
CANSAT01G2982 Cannabis sativa HOM05D007191 ORTHO05D009370 7.3e-112 407.9 322 64.0
Atru.chr3.1215 Acer truncatum HOM05D007191 ORTHO05D009370 1.2e-111 407.1 336 64.3
Haze_03901 Corylus avellana HOM05D007191 ORTHO05D009370 2.1e-111 406.4 407 57.5
Ciclev10025907m.g Citrus clementina HOM05D007191 ORTHO05D009370 2.8e-111 406.0 289 69.9
FAN19G0835 Fragaria x ananassa HOM05D007191 ORTHO05D000122 6.9e-110 401.4 312 65.1
TWI74G0882 Tripterygium wilfordii HOM05D007191 ORTHO05D009370 9.0e-110 401.0 364 60.2
FAN19G2137 Fragaria x ananassa HOM05D007191 ORTHO05D000122 1.5e-109 400.2 312 65.1
Manes.13G101800 Manihot esculenta HOM05D007191 ORTHO05D009370 1.5e-109 400.2 348 60.1
THA.LOC104804178 Tarenaya hassleriana HOM05D007191 ORTHO05D009370 7.6e-109 397.9 290 66.9
Glyma.08G276900 Glycine max HOM05D007191 ORTHO05D009370 1.3e-108 397.1 281 69.8
Manes.13G092280 Manihot esculenta HOM05D007191 ORTHO05D009370 2.9e-108 396.0 348 59.5
Cpa.g.sc55.6 Carica papaya HOM05D007191 ORTHO05D009370 4.9e-108 395.2 286 70.3
vmacro13023 Vaccinium macrocarpon HOM05D007191 ORTHO05D009370 4.9e-108 395.2 294 67.3
VMungo0251G2065 Vigna mungo HOM05D007191 ORTHO05D009370 5.4e-107 391.7 281 69.4
Aqoxy6G01485 Aquilegia oxysepala HOM05D007191 ORTHO05D009370 1.2e-106 390.6 290 65.5
MBI16_g30311_MAGBIO Magnolia biondii HOM05D007191 ORTHO05D009370 2.7e-106 389.4 324 63.0
Duzib147G1243 Durio zibethinus HOM05D007191 ORTHO05D009370 3.5e-106 389.0 313 62.9
Phvul.003G287700 Phaseolus vulgaris HOM05D007191 ORTHO05D009370 3.5e-106 389.0 286 67.8
Cfa006863 Carpinus fangiana HOM05D007191 ORTHO05D000122 4.6e-106 388.7 369 60.7
COL.COLO4_27378 Corchorus olitorius HOM05D007191 ORTHO05D009370 1.0e-105 387.5 289 67.5
Lj4g0026970 Lotus japonicus HOM05D007191 ORTHO05D009370 1.0e-105 387.5 283 68.2
Ca_22623_v3 Cicer arietinum L. HOM05D007191 ORTHO05D009370 3.0e-105 386.0 281 69.0
Psat4g117600 Pisum sativum HOM05D007191 ORTHO05D009370 3.0e-105 386.0 290 65.9
Thecc.01G088100 Theobroma cacao HOM05D007191 ORTHO05D009370 3.9e-105 385.6 289 65.1
arahy.Tifrunner.gnm1.ann1.DV4H7C Arachis hypogaea HOM05D007191 ORTHO05D009370 8.7e-105 384.4 281 68.7
Medtr8g068220 Medicago truncatula HOM05D007191 ORTHO05D009370 1.1e-104 384.0 281 68.7
Nitab4.5_0000402g0060 Nicotiana tabacum HOM05D007191 ORTHO05D009370 1.5e-104 383.6 308 64.3
Gohir.D11G215700 Gossypium hirsutum HOM05D007191 ORTHO05D009370 2.5e-104 382.9 319 62.4
TPR.G29816 Trifolium pratense HOM05D007191 ORTHO05D009370 2.5e-104 382.9 307 63.5
PSO675G0552 Papaver somniferum HOM05D007191 ORTHO05D009370 9.6e-104 380.9 288 65.6
Gohir.A11G207400 Gossypium hirsutum HOM05D007191 ORTHO05D009370 1.3e-103 380.6 290 65.9
Potri.005G147600 Populus trichocarpa HOM05D007191 ORTHO05D009370 1.3e-103 380.6 284 68.7
Aa31LG6G14960 Aethionema arabicum HOM05D007191 ORTHO05D009370 1.6e-103 380.2 315 61.0
Lalb_Chr16g0392111 Lupinus albus HOM05D007191 ORTHO05D009370 3.6e-103 379.0 281 66.9
Peaxi162Scf00085g00523 Petunia axillaris HOM05D007191 ORTHO05D009370 3.6e-103 379.0 317 62.5
Eucgr.H02435 Eucalyptus grandis HOM05D007191 ORTHO05D009370 3.1e-102 375.9 292 65.1
Gorai.007G232000 Gossypium raimondii HOM05D007191 ORTHO05D009370 9.0e-102 374.4 290 65.5
PSO541G2681 Papaver somniferum HOM05D007191 ORTHO05D009370 2.6e-101 372.9 288 64.2
Lsat_1_v5_gn_4_142441 Lactuca sativa HOM05D007191 ORTHO05D009370 5.8e-101 371.7 287 64.5
Sabra05G0118000 Salix brachista HOM05D007191 ORTHO05D009370 7.6e-101 371.3 289 66.4
Solyc11g010900.2 Solanum lycopersicum HOM05D007191 ORTHO05D009370 1.3e-100 370.5 288 63.9
AUR62003688 Chenopodium quinoa HOM05D007191 ORTHO05D009370 2.2e-100 369.8 346 56.9
Sopen11g005640 Solanum pennellii HOM05D007191 ORTHO05D009370 3.8e-100 369.0 288 63.5
AUR62018000 Chenopodium quinoa HOM05D007191 ORTHO05D009370 1.6e-98 363.6 290 63.8
CDE04G1458 Ceratophyllum demersum HOM05D007191 ORTHO05D009370 7.9e-98 361.3 283 62.5
Oeu017115.1 Olea europaea HOM05D007191 ORTHO05D009370 8.7e-97 357.8 330 57.0
HanXRQChr09g0259541 Helianthus annuus HOM05D007191 ORTHO05D009370 3.3e-96 355.9 287 64.1
Nn5g29827 Nelumbo nucifera HOM05D007191 ORTHO05D009370 2.1e-95 353.2 315 59.0
Ah.03g143260 Amaranthus hybridus HOM05D007191 ORTHO05D009370 3.7e-95 352.4 338 57.1
MSTRG.23388 Avicennia marina HOM05D007191 ORTHO05D009370 4.8e-95 352.1 290 60.3
Nitab4.5_0005446g0010 Nicotiana tabacum HOM05D007191 ORTHO05D009370 3.4e-93 345.9 291 62.5
arahy.Tifrunner.gnm1.ann1.6T17AW Arachis hypogaea HOM05D007191 ORTHO05D009370 9.3e-91 337.8 281 63.0
Migut.H02278 Erythranthe guttata HOM05D007191 ORTHO05D009370 1.2e-90 337.4 297 58.6
Sc03g0000490 Simmondsia chinensis HOM05D007191 ORTHO05D009370 2.5e-88 329.7 309 56.6
SalBow3G4077 Salvia bowleyana HOM05D007191 ORTHO05D009370 3.7e-87 325.9 303 56.8
DCAR_003441 Daucus carota HOM05D007191 ORTHO05D003232 5.3e-86 322.0 243 66.7
Os03g0685100 Oryza sativa ssp. japonica HOM05D007191 ORTHO05D009370 8.4e-84 314.7 300 54.3
CAN.G1771.10 Capsicum annuum HOM05D007191 ORTHO05D009370 2.1e-82 310.1 247 63.6
SGA_v2.0_scaffold108G30936 Striga asiatica HOM05D007191 ORTHO05D009370 2.7e-82 309.7 274 56.6
unitig_27.g25347 Utricularia gibba HOM05D007191 ORTHO05D009370 4.6e-82 308.9 291 56.4
Lj2A526T20 Lonicera japonica HOM05D007191 ORTHO05D009370 1.5e-77 293.9 348 49.7
HPP92_014152 Vanilla planifolia HOM05D007191 ORTHO05D009370 1.0e-76 291.2 271 57.2
HPP92_014172 Vanilla planifolia HOM05D007191 ORTHO05D009370 9.4e-75 284.6 282 55.0
ECA232G3284 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.4e-73 280.8 258 57.8
Zm00001eb053350 Zea mays HOM05D007191 ORTHO05D009370 2.5e-72 276.6 261 53.6
Pp3c5_6200 Physcomitrium patens HOM05D007191 ORTHO05D009370 5.7e-72 275.4 303 46.2
SMO364G0498 Selaginella moellendorffii HOM05D007191 ORTHO05D009370 2.8e-71 273.1 299 46.5
PGSC0003DMG400016118 Solanum tuberosum HOM05D007191 ORTHO05D009370 3.4e-69 266.2 199 64.3
Mapoly0036s0111 Marchantia polymorpha HOM05D007191 ORTHO05D009370 4.1e-62 242.7 337 41.8
CBR_g31860 Chara braunii HOM05D000601 ORTHO05D000407 1.7e-60 237.3 297 43.8
AUR62043608 Chenopodium quinoa HOM05D007191 ORTHO05D009370 3.3e-56 223.0 147 70.7
Pp3c5_6210 Physcomitrium patens HOM05D007191 ORTHO05D009370 6.3e-55 218.8 272 42.3
AUR62014153 Chenopodium quinoa HOM05D007191 ORTHO05D002709 6.1e-50 202.2 136 69.9
PGR102G1719 Punica granatum HOM05D007191 ORTHO05D009370 3.0e-49 199.9 204 53.9
Cc00_g34880 Coffea canephora HOM05D007191 ORTHO05D009370 7.5e-48 195.3 154 61.7
MCO07G132 Micromonas commoda HOM05D007191 ORTHO05D009370 2.2e-47 193.7 288 39.2
Cre17.g744947 Chlamydomonas reinhardtii HOM05D007191 ORTHO05D009370 2.4e-38 163.7 363 31.7
SEGI_38116 Sequoiadendron giganteum HOM05D007191 ORTHO05D009370 4.4e-32 142.9 167 44.9
PRCOL_00003319 Prasinoderma coloniale HOM05D007191 ORTHO05D009370 1.1e-30 138.3 302 33.8
SEGI_29034 Sequoiadendron giganteum HOM05D007191 ORTHO05D009370 1.2e-29 134.8 145 48.3
RcHm_v2.0_Chr6g0269301 Rosa chinensis HOM05D007191 ORTHO05D009370 1.9e-22 110.9 99 55.6
Cc07_g13870 Coffea canephora HOM05D007191 ORTHO05D003232 8.6e-20 102.1 67 64.2
Cc07_g13860 Coffea canephora HOM05D007191 ORTHO05D009370 3.3e-19 100.1 82 58.5
Ca_28666_v3 Cicer arietinum L. HOM05D005801 ORTHO05D009370 4.3e-11 73.2 150 32.0
CSS0007107 Camellia sinensis var. sinensis HOM05D007191 ORTHO05D009370 1.1e-09 68.6 61 60.7
CSS0022959 Camellia sinensis var. sinensis HOM05D007191 ORTHO05D009370 1.1e-09 68.6 61 60.7
Lsat_1_v5_gn_5_144900 Lactuca sativa HOM05D005801 ORTHO05D008555 1.1e-06 58.5 164 32.3
GSVIVG01015302001 Vitis vinifera HOM05D005801 ORTHO05D008555 1.9e-06 57.8 154 31.8
SalBow8G1474 Salvia bowleyana HOM05D000221 ORTHO05D359434 3.2e-06 57.0 61 44.3


User provided reference genes

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