Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C014882.2 Cucumis melo HOM05D005629 ORTHO05D008000 3.9e-137 491.5 252 100.0
CsaV3_3G027030 Cucumis sativus L. HOM05D005629 ORTHO05D008000 6.2e-127 457.6 246 95.5
ClCG05G013480 Citrullus lanatus HOM05D005629 ORTHO05D008000 1.6e-119 433.0 246 90.7
Sed0004120 Sechium edule HOM05D005629 ORTHO05D008000 1.2e-109 400.2 247 84.6
Haze_14872 Corylus avellana HOM05D005629 ORTHO05D008000 4.9e-100 368.2 249 76.3
Cfa007230 Carpinus fangiana HOM05D005629 ORTHO05D008000 6.4e-100 367.9 249 76.7
CiPaw.03G055300 Carya illinoinensis HOM05D005629 ORTHO05D008000 7.9e-98 360.9 250 74.0
Hma1.2p1_1278F.1_g272330 Hydrangea macrophylla HOM05D005629 ORTHO05D008000 1.3e-97 360.1 248 75.0
Prupe.3G305800 Prunus persica HOM05D005629 ORTHO05D008000 2.3e-97 359.4 250 75.2
QL02p071469 Quercus lobata HOM05D005629 ORTHO05D008000 2.3e-97 359.4 252 74.6
Dinv33339 Davidia involucrata HOM05D005629 ORTHO05D008000 3.9e-97 358.6 249 75.1
RcHm_v2.0_Chr2g0175511 Rosa chinensis HOM05D005629 ORTHO05D008000 4.3e-96 355.1 249 74.3
GSVIVG01033097001 Vitis vinifera HOM05D005629 ORTHO05D008000 1.3e-95 353.6 246 74.0
FvH4_6g53470 Fragaria vesca HOM05D005629 ORTHO05D008000 1.6e-95 353.2 252 73.4
FAN05G5024 Fragaria x ananassa HOM05D005629 ORTHO05D008000 2.1e-95 352.8 257 71.6
Nitab4.5_0005161g0130 Nicotiana tabacum HOM05D005629 ORTHO05D008000 8.1e-95 350.9 250 72.4
MD09G1011200 Malus domestica HOM05D005629 ORTHO05D008000 1.1e-94 350.5 247 73.3
Eucgr.I01649 Eucalyptus grandis HOM05D005629 ORTHO05D008000 1.4e-94 350.1 249 72.7
FAN09G2642 Fragaria x ananassa HOM05D005629 ORTHO05D008000 1.4e-94 350.1 252 72.6
Peaxi162Scf00700g00023 Petunia axillaris HOM05D005629 ORTHO05D008000 1.4e-94 350.1 233 73.8
Cpa.g.sc171.18 Carica papaya HOM05D005629 ORTHO05D008000 4.0e-94 348.6 258 69.8
Potri.001G330800 Populus trichocarpa HOM05D005629 ORTHO05D008000 4.0e-94 348.6 259 71.0
CANSAT64G1539 Cannabis sativa HOM05D005629 ORTHO05D008000 5.3e-94 348.2 232 76.3
Nitab4.5_0000559g0400 Nicotiana tabacum HOM05D005629 ORTHO05D008000 5.3e-94 348.2 246 72.0
Sc03g0006560 Simmondsia chinensis HOM05D005629 ORTHO05D008000 2.0e-93 346.3 217 78.3
Oeu058781.1 Olea europaea HOM05D005629 ORTHO05D008000 2.6e-93 345.9 246 72.0
arahy.Tifrunner.gnm1.ann1.26H0NE Arachis hypogaea HOM05D005629 ORTHO05D008000 3.4e-93 345.5 247 72.1
Manes.15G160600 Manihot esculenta HOM05D005629 ORTHO05D008000 3.4e-93 345.5 255 71.0
Aqoxy3G01541 Aquilegia oxysepala HOM05D005629 ORTHO05D008000 4.5e-93 345.1 239 74.1
FAN02G3075 Fragaria x ananassa HOM05D005629 ORTHO05D008000 4.5e-93 345.1 265 69.4
COL.COLO4_17207 Corchorus olitorius HOM05D005629 ORTHO05D008000 9.9e-93 344.0 254 69.7
CSS0048682 Camellia sinensis var. sinensis HOM05D005629 ORTHO05D004503 1.3e-92 343.6 212 80.2
Ciclev10015840m.g Citrus clementina HOM05D005629 ORTHO05D008000 1.3e-92 343.6 252 71.8
PGR142G0641 Punica granatum HOM05D005629 ORTHO05D008000 1.7e-92 343.2 253 71.1
Sabra16G0211800 Salix brachista HOM05D005629 ORTHO05D008000 1.7e-92 343.2 230 77.0
Thecc.04G035600 Theobroma cacao HOM05D005629 ORTHO05D008000 1.7e-92 343.2 255 70.2
Actinidia36200 Actinidia chinensis HOM05D005629 ORTHO05D008000 4.9e-92 341.7 231 75.3
Phvul.001G094100 Phaseolus vulgaris HOM05D005629 ORTHO05D008000 4.9e-92 341.7 248 72.2
ECA246G2396 Erigeron canadensis HOM05D005629 ORTHO05D008000 6.4e-92 341.3 253 69.2
Gohir.A07G228100 Gossypium hirsutum HOM05D005629 ORTHO05D008000 8.4e-92 340.9 255 71.4
Lalb_Chr14g0363391 Lupinus albus HOM05D005629 ORTHO05D008000 8.4e-92 340.9 247 73.3
Atru.chr6.2566 Acer truncatum HOM05D005629 ORTHO05D008000 1.4e-91 340.1 248 71.4
SalBow4G2288 Salvia bowleyana HOM05D005629 ORTHO05D008000 1.4e-91 340.1 247 71.7
Lj1g0025061 Lotus japonicus HOM05D005629 ORTHO05D008000 1.9e-91 339.7 253 72.7
PGSC0003DMG400013378 Solanum tuberosum HOM05D005629 ORTHO05D008000 2.5e-91 339.3 202 80.2
Ca_26782_v3 Cicer arietinum L. HOM05D005629 ORTHO05D008000 3.2e-91 339.0 250 71.6
Gohir.D07G235300 Gossypium hirsutum HOM05D005629 ORTHO05D008000 3.2e-91 339.0 256 70.3
VMungo1383G2395 Vigna mungo HOM05D005629 ORTHO05D008000 3.2e-91 339.0 254 69.3
TWI56G1125 Tripterygium wilfordii HOM05D005629 ORTHO05D008000 5.5e-91 338.2 252 70.6
Gohir.A11G064500 Gossypium hirsutum HOM05D005629 ORTHO05D008000 1.2e-90 337.0 254 68.9
BcaC06g33860 Brassica carinata HOM05D005629 ORTHO05D008000 1.6e-90 336.7 212 76.9
HanXRQChr17g0550111 Helianthus annuus HOM05D005629 ORTHO05D008000 1.6e-90 336.7 252 69.0
AL5G16240 Arabidopsis lyrata HOM05D005629 ORTHO05D008000 2.1e-90 336.3 254 68.5
A06p41480 Brassica napus HOM05D005629 ORTHO05D008000 2.1e-90 336.3 212 76.9
BraA06t27073Z Brassica rapa HOM05D005629 ORTHO05D008000 2.1e-90 336.3 212 76.9
Gohir.D11G068800 Gossypium hirsutum HOM05D005629 ORTHO05D008000 2.1e-90 336.3 254 68.5
TPR.G38340 Trifolium pratense HOM05D005629 ORTHO05D008000 2.1e-90 336.3 248 70.6
C07p36170 Brassica napus HOM05D005629 ORTHO05D008000 2.7e-90 335.9 212 76.9
Actinidia05920 Actinidia chinensis HOM05D005629 ORTHO05D008000 3.5e-90 335.5 202 82.2
Duzib264G0865 Durio zibethinus HOM05D005629 ORTHO05D008000 3.5e-90 335.5 255 70.2
Gorai.001G271100 Gossypium raimondii HOM05D005629 ORTHO05D008000 3.5e-90 335.5 257 70.4
BolC7t44133H Brassica oleracea HOM05D005629 ORTHO05D008000 4.6e-90 335.1 212 76.4
Psat3g164800 Pisum sativum HOM05D005629 ORTHO05D008000 6.0e-90 334.7 238 73.1
AT3G27110 Arabidopsis thaliana HOM05D005629 ORTHO05D008000 7.9e-90 334.3 254 68.1
Glyma.16G056900 Glycine max HOM05D005629 ORTHO05D008000 7.9e-90 334.3 247 70.9
PSO017G3506 Papaver somniferum HOM05D005629 ORTHO05D008000 7.9e-90 334.3 248 69.8
Aa31LG2G5490 Aethionema arabicum HOM05D005629 ORTHO05D008000 1.0e-89 334.0 249 68.3
CAN.G1751.5 Capsicum annuum HOM05D005629 ORTHO05D008000 1.0e-89 334.0 250 71.2
Solyc03g005000.4 Solanum lycopersicum HOM05D005629 ORTHO05D008000 1.0e-89 334.0 202 78.7
Sopen03g001010 Solanum pennellii HOM05D005629 ORTHO05D008000 1.0e-89 334.0 202 78.7
Gorai.007G073600 Gossypium raimondii HOM05D005629 ORTHO05D008000 3.0e-89 332.4 255 68.2
Sp2g16240 Schrenkiella parvula HOM05D005629 ORTHO05D008000 3.9e-89 332.0 249 68.7
BcaC06g31019 Brassica carinata HOM05D005629 ORTHO05D008000 1.1e-88 330.5 231 71.4
BcaC06g33857 Brassica carinata HOM05D005629 ORTHO05D008000 1.1e-88 330.5 231 71.4
Thhalv10004520m.g Eutrema salsugineum HOM05D005629 ORTHO05D008000 1.1e-88 330.5 249 68.7
Carub.0005s0536 Capsella rubella HOM05D005629 ORTHO05D008000 1.5e-88 330.1 251 69.3
Cc07_g00800 Coffea canephora HOM05D005629 ORTHO05D008000 2.5e-88 329.3 257 66.1
Lju41A52T99 Lonicera japonica HOM05D005629 ORTHO05D008000 2.5e-88 329.3 220 75.5
CARHR148330 Cardamine hirsuta HOM05D005629 ORTHO05D008000 3.3e-88 328.9 250 68.0
Migut.F00066 Erythranthe guttata HOM05D005629 ORTHO05D008000 3.3e-88 328.9 204 77.5
SGA_v2.0_scaffold253G45198 Striga asiatica HOM05D005629 ORTHO05D008000 3.3e-88 328.9 203 79.8
EL10Ac6g15359 Beta vulgaris HOM05D005629 ORTHO05D008000 4.3e-88 328.6 251 66.1
THA.LOC104825621 Tarenaya hassleriana HOM05D005629 ORTHO05D008000 1.3e-87 327.0 200 78.5
Medtr7g033405 Medicago truncatula HOM05D005629 ORTHO05D008000 1.6e-87 326.6 249 68.3
FAN14G4117 Fragaria x ananassa HOM05D005629 ORTHO05D008000 1.8e-86 323.2 321 58.3
Mapoly0033s0112 Marchantia polymorpha HOM05D005629 ORTHO05D008000 4.0e-86 322.0 196 78.6
Ah.02g120470 Amaranthus hybridus HOM05D005629 ORTHO05D008000 6.9e-86 321.2 254 64.2
Os01g0970700 Oryza sativa ssp. japonica HOM05D005629 ORTHO05D008000 2.0e-85 319.7 197 79.2
unitig_52.g17654 Utricularia gibba HOM05D005629 ORTHO05D008000 2.6e-85 319.3 193 80.3
ATR0561G239 Amborella trichopoda HOM05D005629 ORTHO05D008000 5.8e-85 318.2 200 77.5
DCAR_011309 Daucus carota HOM05D005629 ORTHO05D008000 1.3e-84 317.0 246 65.9
Zm00001eb127160 Zea mays HOM05D005629 ORTHO05D008000 1.3e-84 317.0 192 80.7
HPP92_024304 Vanilla planifolia HOM05D005629 ORTHO05D008000 1.4e-83 313.5 199 76.4
SEGI_10761 Sequoiadendron giganteum HOM05D005629 ORTHO05D008000 1.2e-82 310.5 229 69.0
HPP92_024293 Vanilla planifolia HOM05D005629 ORTHO05D008000 1.2e-82 310.5 199 75.9
Rhsim10G0006600 Rhododendron simsii HOM05D005629 ORTHO05D008000 1.6e-82 310.1 249 66.3
vmacro05954 Vaccinium macrocarpon HOM05D005629 ORTHO05D008000 2.3e-81 306.2 212 72.6
Hund04337 Selenicereus undatus HOM05D005629 ORTHO05D008000 3.7e-79 298.9 277 58.5
Migut.H00778 Erythranthe guttata HOM05D005629 ORTHO05D008000 1.4e-75 287.0 173 79.8
CDE05G1086 Ceratophyllum demersum HOM05D001132 ORTHO05D002510 2.8e-71 272.7 208 64.9
Nn4g22342 Nelumbo nucifera HOM05D005629 ORTHO05D008000 1.1e-70 270.8 246 61.4
Dinv25662 Davidia involucrata HOM05D005629 ORTHO05D000552 7.7e-69 264.6 146 87.7
AUR62003511 Chenopodium quinoa HOM05D005629 ORTHO05D008000 4.2e-67 258.8 161 75.8
Migut.G01029 Erythranthe guttata HOM05D005629 ORTHO05D008000 3.0e-65 252.7 181 72.4
Migut.K01513 Erythranthe guttata HOM05D005629 ORTHO05D008000 1.5e-64 250.4 184 69.6
Cre14.g620150 Chlamydomonas reinhardtii HOM05D005629 ORTHO05D008000 9.7e-64 247.7 189 65.1
AUR62017822 Chenopodium quinoa HOM05D005629 ORTHO05D008000 1.4e-62 243.8 146 78.1
Gorai.004G126700 Gossypium raimondii HOM05D005629 ORTHO05D008000 1.3e-60 237.3 148 79.1
MCO03G471 Micromonas commoda HOM05D005629 ORTHO05D008000 3.8e-60 235.7 187 60.4
Gohir.D08G117950 Gossypium hirsutum HOM05D005629 ORTHO05D008000 1.1e-59 234.2 146 79.5
Migut.K01251 Erythranthe guttata HOM05D005629 ORTHO05D008000 1.5e-56 223.8 159 71.7
AagrBONN_evm.TU.Sc2ySwM_117.2248 Anthoceros agrestis HOM05D005629 ORTHO05D008000 1.0e-52 211.1 123 79.7
Zm00001eb427710 Zea mays HOM05D005629 ORTHO05D003422 2.5e-51 206.5 120 82.5
Zm00001eb174780 Zea mays HOM05D005629 ORTHO05D008000 3.2e-51 206.1 122 82.0
PRCOL_00001739 Prasinoderma coloniale HOM05D005629 ORTHO05D008000 2.1e-50 203.4 183 52.5
Zm00001eb146790 Zea mays HOM05D005629 ORTHO05D003607 2.6e-48 196.4 116 83.6
Zm00001eb332250 Zea mays HOM05D002343 ORTHO05D002443 4.8e-47 192.2 130 74.6
FvH4_6g53350 Fragaria vesca HOM05D005629 ORTHO05D022663 1.7e-31 140.6 255 39.2
Zm00001eb202540 Zea mays HOM05D002249 ORTHO05D002443 6.3e-31 138.7 91 73.6
FvH4_6g53390 Fragaria vesca HOM05D005629 ORTHO05D022663 4.1e-30 136.0 256 37.5
Lsat_1_v5_gn_9_1240 Lactuca sativa HOM05D005629 ORTHO05D008000 1.3e-28 131.0 70 85.7
arahy.Tifrunner.gnm1.ann1.0H9GWB Arachis hypogaea HOM05D005629 ORTHO05D008000 7.3e-27 125.2 76 78.9
FvH4_6g53420 Fragaria vesca HOM05D005629 ORTHO05D022663 1.2e-26 124.4 144 47.2
Lsat_1_v5_gn_0_46360 Lactuca sativa HOM05D005629 ORTHO05D008000 6.1e-26 122.1 128 55.5
FAN14G1519 Fragaria x ananassa HOM05D005629 ORTHO05D022663 3.7e-15 86.3 223 28.3
PRCOL_00005410 Prasinoderma coloniale HOM05D005629 ORTHO05D333266 4.6e-13 79.3 187 29.9
AagrBONN_evm.TU.Sc2ySwM_228.873 Anthoceros agrestis HOM05D005629 ORTHO05D008000 1.3e-12 77.8 210 25.7
FvH4_6g53460 Fragaria vesca HOM05D005629 ORTHO05D022663 6.6e-12 75.5 173 33.5
CDE02G4678 Ceratophyllum demersum HOM05D000139 ORTHO05D000103 4.3e-11 72.8 193 29.0
TAR622G1261 Trochodendron aralioides HOM05D005629 ORTHO05D008000 4.9e-07 59.3 29 96.6
FvH4_6g53450 Fragaria vesca HOM05D005629 ORTHO05D008000 6.4e-07 58.9 103 37.9
Zm00001eb059400 Zea mays HOM05D003056 ORTHO05D003422 8.3e-07 58.5 59 59.3


User provided reference genes

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