Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C014554.2 Cucumis melo HOM05D004351 ORTHO05D005196 1.6e-255 885.6 450 100.0
ClCG02G022760 Citrullus lanatus HOM05D004351 ORTHO05D005196 9.1e-214 746.9 439 87.2
CsaV3_6G038890 Cucumis sativus L. HOM05D004351 ORTHO05D005196 6.1e-210 734.2 395 94.7
Sed0012563 Sechium edule HOM05D004351 ORTHO05D005196 4.7e-194 681.4 408 85.3
Duzib168G2208 Durio zibethinus HOM05D004351 ORTHO05D005196 1.5e-187 659.8 391 84.9
Thecc.09G247500 Theobroma cacao HOM05D004351 ORTHO05D005196 2.5e-187 659.1 391 84.9
GSVIVG01037327001 Vitis vinifera HOM05D004351 ORTHO05D005196 9.8e-184 647.1 393 83.0
Gorai.001G133200 Gossypium raimondii HOM05D004351 ORTHO05D005196 2.2e-183 646.0 392 82.7
Gohir.D07G123400 Gossypium hirsutum HOM05D004351 ORTHO05D005196 6.4e-183 644.4 392 82.4
CSS0023003 Camellia sinensis var. sinensis HOM05D004351 ORTHO05D005196 1.4e-182 643.3 389 82.0
Dinv36161 Davidia involucrata HOM05D004351 ORTHO05D005196 9.2e-182 640.6 389 82.8
QL05p016402 Quercus lobata HOM05D004351 ORTHO05D005196 1.6e-181 639.8 391 81.6
TWI31G0625 Tripterygium wilfordii HOM05D004351 ORTHO05D005196 2.7e-181 639.0 402 80.8
Prupe.4G264000 Prunus persica HOM05D004351 ORTHO05D005196 7.8e-181 637.5 392 81.1
Gohir.A07G119100 Gossypium hirsutum HOM05D004351 ORTHO05D005196 2.3e-180 636.0 396 80.8
Ca_06202_v3 Cicer arietinum L. HOM05D004351 ORTHO05D005196 1.6e-178 629.8 391 81.1
Eucgr.J00682 Eucalyptus grandis HOM05D004351 ORTHO05D005196 1.6e-178 629.8 393 80.7
PGR119G2369 Punica granatum HOM05D004351 ORTHO05D005196 4.7e-178 628.2 392 80.4
TAR633G2420 Trochodendron aralioides HOM05D004351 ORTHO05D005196 6.2e-178 627.9 390 81.5
Actinidia24469 Actinidia chinensis HOM05D004351 ORTHO05D005196 8.0e-178 627.5 389 80.7
CiPaw.13G149200 Carya illinoinensis HOM05D004351 ORTHO05D005196 1.4e-177 626.7 393 79.9
Cfa009892 Carpinus fangiana HOM05D004351 ORTHO05D005196 3.1e-177 625.5 405 79.0
Atru.chr3.3000 Acer truncatum HOM05D004351 ORTHO05D005196 4.0e-177 625.2 392 80.4
Nn7g36761 Nelumbo nucifera HOM05D004351 ORTHO05D005196 4.0e-177 625.2 390 81.3
Potri.009G067700 Populus trichocarpa HOM05D004351 ORTHO05D005196 5.2e-177 624.8 394 78.7
RcHm_v2.0_Chr5g0050371 Rosa chinensis HOM05D004351 ORTHO05D005196 6.8e-177 624.4 391 79.8
PGR119G0622 Punica granatum HOM05D004351 ORTHO05D005196 8.9e-177 624.0 393 79.1
Manes.02G136500 Manihot esculenta HOM05D004351 ORTHO05D005196 1.5e-176 623.2 394 78.7
Medtr5g089280 Medicago truncatula HOM05D004351 ORTHO05D005196 2.0e-176 622.9 394 79.9
Ca_06205_v3 Cicer arietinum L. HOM05D004351 ORTHO05D005196 2.6e-176 622.5 399 79.4
Lalb_Chr17g0347771 Lupinus albus HOM05D004351 ORTHO05D005196 4.4e-176 621.7 392 79.6
LjContig00564g0010016 Lotus japonicus HOM05D004351 ORTHO05D005196 5.8e-176 621.3 408 77.9
TPR.G16412 Trifolium pratense HOM05D004351 ORTHO05D005196 7.5e-176 620.9 393 79.6
Cfa009891 Carpinus fangiana HOM05D004351 ORTHO05D005196 1.3e-175 620.2 405 77.0
Glyma.15G055500 Glycine max HOM05D004351 ORTHO05D005196 1.7e-175 619.8 394 79.9
Oeu013460.1 Olea europaea HOM05D004351 ORTHO05D005196 2.2e-175 619.4 374 81.8
Prupe.4G264100 Prunus persica HOM05D004351 ORTHO05D005196 2.2e-175 619.4 392 79.3
Phvul.006G204400 Phaseolus vulgaris HOM05D004351 ORTHO05D005196 3.7e-175 618.6 387 80.1
VMungo0540G1132 Vigna mungo HOM05D004351 ORTHO05D005196 6.4e-175 617.8 389 79.9
Potri.001G273400 Populus trichocarpa HOM05D004351 ORTHO05D005196 1.1e-174 617.1 406 77.3
SalBow6G0501 Salvia bowleyana HOM05D004351 ORTHO05D005196 1.4e-174 616.7 393 79.1
TWI79G1476 Tripterygium wilfordii HOM05D004351 ORTHO05D005196 1.4e-174 616.7 395 79.0
Ciclev10014772m.g Citrus clementina HOM05D004351 ORTHO05D005196 2.4e-174 615.9 406 76.6
Migut.D00673 Erythranthe guttata HOM05D004351 ORTHO05D005196 2.4e-174 615.9 389 78.1
MD03G1164800 Malus domestica HOM05D004351 ORTHO05D005196 7.0e-174 614.4 396 78.0
PSO339G1418 Papaver somniferum HOM05D004351 ORTHO05D005196 1.2e-173 613.6 391 79.8
FAN21G2561 Fragaria x ananassa HOM05D004351 ORTHO05D005196 2.1e-173 612.8 420 74.8
Lj2C622G21 Lonicera japonica HOM05D004351 ORTHO05D005196 2.1e-173 612.8 404 77.0
THA.LOC104811202 Tarenaya hassleriana HOM05D004351 ORTHO05D005196 2.7e-173 612.5 390 78.2
FvH4_3g27770 Fragaria vesca HOM05D004351 ORTHO05D005196 6.0e-173 611.3 395 78.0
DCAR_023830 Daucus carota HOM05D004351 ORTHO05D005196 1.3e-172 610.1 387 77.8
MSTRG.18468 Avicennia marina HOM05D004351 ORTHO05D005196 3.9e-172 608.6 400 77.2
A10p25600 Brassica napus HOM05D004351 ORTHO05D005196 3.9e-172 608.6 392 77.3
C09p64690 Brassica napus HOM05D004351 ORTHO05D005196 5.0e-172 608.2 391 77.2
BraA10t44627Z Brassica rapa HOM05D004351 ORTHO05D005196 5.0e-172 608.2 403 75.9
AL6G22990 Arabidopsis lyrata HOM05D004351 ORTHO05D005196 6.6e-172 607.8 387 77.3
BolC9t59301H Brassica oleracea HOM05D004351 ORTHO05D005196 6.6e-172 607.8 391 77.0
QL01p016827 Quercus lobata HOM05D004351 ORTHO05D005196 6.6e-172 607.8 387 78.6
CANSAT80G2609 Cannabis sativa HOM05D004351 ORTHO05D005196 1.5e-171 606.7 391 77.7
CiPaw.14G111600 Carya illinoinensis HOM05D004351 ORTHO05D005196 1.9e-171 606.3 390 76.7
AT5G12200 Arabidopsis thaliana HOM05D004351 ORTHO05D005196 3.3e-171 605.5 387 76.7
Aa31LG3G15030 Aethionema arabicum HOM05D004351 ORTHO05D005196 7.3e-171 604.4 392 77.3
CARHR200920 Cardamine hirsuta HOM05D004351 ORTHO05D005196 7.3e-171 604.4 389 76.9
arahy.Tifrunner.gnm1.ann1.3AG2SN Arachis hypogaea HOM05D004351 ORTHO05D005196 1.6e-170 603.2 396 76.8
Nitab4.5_0009266g0060 Nicotiana tabacum HOM05D004351 ORTHO05D005196 2.8e-170 602.4 405 73.6
arahy.Tifrunner.gnm1.ann1.A6ZB5M Arachis hypogaea HOM05D004351 ORTHO05D005196 3.6e-170 602.1 396 76.5
BcaNung06879 Brassica carinata HOM05D004351 ORTHO05D005196 3.6e-170 602.1 396 76.8
Haze_23254 Corylus avellana HOM05D004351 ORTHO05D005196 3.6e-170 602.1 407 76.4
Thhalv10013212m.g Eutrema salsugineum HOM05D004351 ORTHO05D005196 8.1e-170 600.9 392 75.8
Sp6g31440 Schrenkiella parvula HOM05D004351 ORTHO05D005196 8.1e-170 600.9 393 76.3
Sopen11g024720 Solanum pennellii HOM05D004351 ORTHO05D005196 8.1e-170 600.9 402 75.1
Carub.0006s1070 Capsella rubella HOM05D004351 ORTHO05D005196 1.4e-169 600.1 389 77.1
Glyma.02G278600 Glycine max HOM05D004351 ORTHO05D005196 1.4e-169 600.1 402 75.6
unitig_62.g23874 Utricularia gibba HOM05D004351 ORTHO05D005196 1.8e-169 599.7 388 75.5
Glyma.14G036000 Glycine max HOM05D004351 ORTHO05D005196 3.1e-169 599.0 402 76.4
Aqoxy2G00403 Aquilegia oxysepala HOM05D004351 ORTHO05D005196 4.0e-169 598.6 356 83.7
HanXRQChr13g0418801 Helianthus annuus HOM05D004351 ORTHO05D005196 6.8e-169 597.8 391 78.0
Solyc11g064920.2 Solanum lycopersicum HOM05D004351 ORTHO05D005196 8.9e-169 597.4 403 75.2
ECA240G3738 Erigeron canadensis HOM05D004351 ORTHO05D005196 1.2e-168 597.0 449 69.9
Ah.06g194690 Amaranthus hybridus HOM05D004351 ORTHO05D005196 2.0e-168 596.3 393 75.3
Lj2A623G23 Lonicera japonica HOM05D004351 ORTHO05D005196 2.6e-168 595.9 399 75.7
Sabra09G0050700 Salix brachista HOM05D004351 ORTHO05D005196 2.6e-168 595.9 464 67.5
TPR.G16392 Trifolium pratense HOM05D004351 ORTHO05D005196 3.4e-168 595.5 393 76.1
Nitab4.5_0006764g0060 Nicotiana tabacum HOM05D004351 ORTHO05D005196 4.4e-168 595.1 416 72.4
FAN11G3899 Fragaria x ananassa HOM05D004351 ORTHO05D005196 5.8e-168 594.7 395 76.7
VMungo0647G2253 Vigna mungo HOM05D004351 ORTHO05D005196 5.8e-168 594.7 388 76.5
Actinidia06976 Actinidia chinensis HOM05D004351 ORTHO05D005196 9.9e-168 594.0 389 78.1
Rhsim13G0207700 Rhododendron simsii HOM05D004351 ORTHO05D005196 1.3e-167 593.6 403 74.9
CAN.G468.6 Capsicum annuum HOM05D004351 ORTHO05D005196 2.9e-167 592.4 378 77.2
Phvul.008G202200 Phaseolus vulgaris HOM05D004351 ORTHO05D005196 6.4e-167 591.3 360 81.1
Medtr5g089200 Medicago truncatula HOM05D004351 ORTHO05D005196 2.4e-166 589.3 390 75.1
Sc09g0001080 Simmondsia chinensis HOM05D004351 ORTHO05D005196 2.4e-166 589.3 394 75.6
AUR62006553 Chenopodium quinoa HOM05D004351 ORTHO05D005196 5.4e-166 588.2 410 73.2
Psat2g020840 Pisum sativum HOM05D004351 ORTHO05D005196 1.6e-165 586.6 403 74.2
ATR1096G054 Amborella trichopoda HOM05D004351 ORTHO05D005196 3.5e-165 585.5 371 77.6
Peaxi162Scf00004g04314 Petunia axillaris HOM05D004351 ORTHO05D005196 3.3e-163 578.9 397 73.6
COL.COLO4_24484 Corchorus olitorius HOM05D004351 ORTHO05D005196 5.6e-163 578.2 394 76.9
Dinv15025 Davidia involucrata HOM05D004351 ORTHO05D005196 1.2e-162 577.0 389 75.3
Os01g0807900 Oryza sativa ssp. japonica HOM05D004351 ORTHO05D005196 5.4e-158 561.6 353 78.2
Zm00001eb150370 Zea mays HOM05D004351 ORTHO05D005196 1.3e-156 557.0 374 74.1
SEGI_39462 Sequoiadendron giganteum HOM05D004351 ORTHO05D005196 1.7e-156 556.6 371 74.7
HPP92_018205 Vanilla planifolia HOM05D004351 ORTHO05D005196 2.3e-156 556.2 390 72.3
Gohir.D08G020300 Gossypium hirsutum HOM05D004351 ORTHO05D005196 1.5e-155 553.5 394 73.9
CDE09G1005 Ceratophyllum demersum HOM05D004351 ORTHO05D005196 2.0e-152 543.1 395 70.4
Gohir.A08G010200 Gossypium hirsutum HOM05D004351 ORTHO05D005196 7.6e-152 541.2 352 79.0
Hma1.2p1_0460F.1_g157460 Hydrangea macrophylla HOM05D004351 ORTHO05D005196 8.4e-151 537.7 335 79.7
Lsat_1_v5_gn_3_110020 Lactuca sativa HOM05D004351 ORTHO05D005196 7.1e-150 534.6 360 76.9
Hma1.2p1_0460F.1_g157450 Hydrangea macrophylla HOM05D004351 ORTHO05D005196 9.3e-150 534.3 319 80.9
LjContig00564g0013946 Lotus japonicus HOM05D004351 ORTHO05D005196 2.1e-149 533.1 377 72.1
SMO351G0214 Selaginella moellendorffii HOM05D004351 ORTHO05D005196 2.5e-147 526.2 354 73.2
Mapoly0086s0068 Marchantia polymorpha HOM05D004351 ORTHO05D005196 5.6e-147 525.0 393 66.4
TPR.G16403 Trifolium pratense HOM05D004351 ORTHO05D005196 1.1e-145 520.8 317 80.1
AUR62000207 Chenopodium quinoa HOM05D004351 ORTHO05D005196 1.2e-141 507.3 327 76.5
Cc00_g05700 Coffea canephora HOM05D004351 ORTHO05D005196 2.1e-141 506.5 338 75.4
Hund21970 Selenicereus undatus HOM05D004351 ORTHO05D005196 2.5e-139 499.6 400 66.5
EL10Ac4g10103 Beta vulgaris HOM05D004351 ORTHO05D005196 1.4e-134 483.8 399 64.2
Rhsim13G0210300 Rhododendron simsii HOM05D004351 ORTHO05D005196 1.3e-132 477.2 303 79.2
Cc00_g05720 Coffea canephora HOM05D004351 ORTHO05D005196 4.5e-128 462.2 306 74.8
AagrBONN_evm.TU.Sc2ySwM_344.922 Anthoceros agrestis HOM05D004351 ORTHO05D005196 1.6e-125 453.8 302 73.8
TAR636G2603 Trochodendron aralioides HOM05D004351 ORTHO05D005196 3.9e-116 422.5 255 81.6
Cre02.g097000 Chlamydomonas reinhardtii HOM05D004351 ORTHO05D005196 8.8e-116 421.4 362 58.8
Pp3c24_19320 Physcomitrium patens HOM05D004351 ORTHO05D005196 2.8e-114 416.4 284 69.7
Sc09g0005690 Simmondsia chinensis HOM05D004351 ORTHO05D005196 9.1e-113 411.4 289 73.0
PRCOL_00004379 Prasinoderma coloniale HOM05D004351 ORTHO05D005196 1.5e-112 410.6 375 56.8
Eucgr.J00683 Eucalyptus grandis HOM05D004351 ORTHO05D005196 6.5e-111 405.2 375 59.5
Cpa.g.sc34.180 Carica papaya HOM05D004351 ORTHO05D005196 5.5e-110 402.1 265 75.5
Psat0s6670g0080 Pisum sativum HOM05D004351 ORTHO05D005196 6.1e-109 398.7 235 82.6
Psat0s4007g0120 Pisum sativum HOM05D004351 ORTHO05D005196 3.9e-108 396.0 234 82.9
SGA_v2.0_scaffold8G04539 Striga asiatica HOM05D004351 ORTHO05D005196 2.0e-104 383.6 395 55.7
Sed0017489 Sechium edule HOM05D004351 ORTHO05D005196 5.9e-104 382.1 408 56.4
Psat6g063440 Pisum sativum HOM05D004351 ORTHO05D005196 7.7e-96 355.1 201 86.6
Glyma.08G177502 Glycine max HOM05D004351 ORTHO05D005196 1.4e-92 344.4 229 75.5
Haze_26731 Corylus avellana HOM05D004351 ORTHO05D005196 7.2e-86 322.0 370 48.4
MCO02G098 Micromonas commoda HOM05D004351 ORTHO05D005196 7.5e-83 312.0 349 46.1
vmacro04976 Vaccinium macrocarpon HOM05D004351 ORTHO05D005196 4.8e-82 309.3 164 90.2
Gorai.004G014900 Gossypium raimondii HOM05D004351 ORTHO05D005196 8.6e-79 298.5 312 54.5
LjContig00564g0001423 Lotus japonicus HOM05D004351 ORTHO05D005196 6.6e-71 272.3 189 70.4
Haze_26934 Corylus avellana HOM05D004351 ORTHO05D005196 9.5e-70 268.5 366 42.3
PSO211G0001 Papaver somniferum HOM05D004351 ORTHO05D005196 9.3e-41 172.2 114 75.4
PSO384G0035 Papaver somniferum HOM05D004351 ORTHO05D005196 9.3e-41 172.2 114 75.4
CBR_g36941 Chara braunii HOM05D004351 ORTHO05D005196 5.6e-38 162.9 191 46.1
vmacro04977 Vaccinium macrocarpon HOM05D004351 ORTHO05D005196 1.2e-35 155.2 151 58.9
VMungo0540G1052 Vigna mungo HOM05D004351 ORTHO05D005196 4.2e-33 146.7 104 70.2
Psat2g075720 Pisum sativum HOM05D000058 ORTHO05D002699 2.0e-27 127.9 68 85.3
Pp3s42_40 Physcomitrium patens HOM05D004829 ORTHO05D034576 2.1e-24 117.9 366 27.6
Psat6g063400 Pisum sativum HOM05D013666 ORTHO05D015141 5.1e-23 113.2 74 74.3
Psat2g075680 Pisum sativum HOM05D004351 ORTHO05D005196 2.5e-22 110.9 60 83.3
TAR636G1014 Trochodendron aralioides HOM05D004351 ORTHO05D005196 3.8e-18 97.1 110 54.5
Rhsim13G0210400 Rhododendron simsii HOM05D004351 ORTHO05D005196 4.9e-18 96.7 70 65.7
Cc00_g05710 Coffea canephora HOM05D004351 ORTHO05D005196 1.9e-17 94.7 70 65.7
Cc00_g23240 Coffea canephora HOM05D004351 ORTHO05D005196 1.3e-13 82.0 58 70.7
TAR636G0959 Trochodendron aralioides HOM05D004351 ORTHO05D005196 9.0e-12 75.9 59 69.5
MBI13_g08984_MAGBIO Magnolia biondii HOM05D004351 ORTHO05D005196 1.5e-11 75.1 106 47.2
Oeu038112.1 Olea europaea HOM05D004351 ORTHO05D005196 3.8e-10 70.5 41 82.9
QL03p008751 Quercus lobata HOM05D004351 ORTHO05D005196 3.8e-10 70.5 35 88.6
MBI13_g09228_MAGBIO Magnolia biondii HOM05D004351 ORTHO05D005196 8.4e-10 69.3 77 55.8
CSS0045717 Camellia sinensis var. sinensis HOM05D004351 ORTHO05D005196 2.5e-09 67.8 62 56.5
GSVIVG01019275001 Vitis vinifera HOM05D004351 ORTHO05D005196 2.5e-09 67.8 83 45.8
QL06p042225 Quercus lobata HOM05D004351 ORTHO05D005196 4.2e-09 67.0 35 82.9
Cc00_g05730 Coffea canephora HOM05D004351 ORTHO05D005196 1.2e-08 65.5 31 87.1
GSVIVG01027881001 Vitis vinifera HOM05D003070 ORTHO05D003567 2.3e-07 61.2 55 54.5
Pp3c14_11050 Physcomitrium patens HOM05D005670 ORTHO05D007612 5.1e-07 60.1 334 24.6
Zm00001eb423560 Zea mays HOM05D000760 ORTHO05D000618 3.3e-06 57.4 40 62.5


User provided reference genes

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