Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C014471.2 Cucumis melo HOM05D006973 ORTHO05D008636 9.2e-63 243.4 127 100.0
CsaV3_6G038070 Cucumis sativus L. HOM05D006973 ORTHO05D008636 3.6e-59 231.5 127 97.6
ClCG09G022400 Citrullus lanatus HOM05D006973 ORTHO05D008636 6.6e-53 210.7 127 89.8
Sed0009997 Sechium edule HOM05D006973 ORTHO05D008636 7.1e-31 137.5 128 68.0
RcHm_v2.0_Chr2g0151491 Rosa chinensis HOM05D006973 ORTHO05D008636 6.3e-19 97.8 140 50.0
Glyma.02G286900 Glycine max HOM05D006973 ORTHO05D008636 8.2e-19 97.4 102 56.9
VMungo0647G1950 Vigna mungo HOM05D006973 ORTHO05D008636 8.2e-19 97.4 68 69.1
Cfa021245 Carpinus fangiana HOM05D006973 ORTHO05D008636 1.1e-18 97.1 68 75.0
Sabra02G0048600 Salix brachista HOM05D006973 ORTHO05D008636 1.8e-18 96.3 132 46.2
Haze_13497 Corylus avellana HOM05D006973 ORTHO05D008636 3.1e-18 95.5 64 76.6
FAN05G1052 Fragaria x ananassa HOM05D006973 ORTHO05D008636 5.3e-18 94.7 66 72.7
FAN09G4519 Fragaria x ananassa HOM05D006973 ORTHO05D008636 5.3e-18 94.7 66 72.7
Dinv21566 Davidia involucrata HOM05D006973 ORTHO05D008636 6.9e-18 94.4 119 50.4
Glyma.14G028000 Glycine max HOM05D006973 ORTHO05D008636 6.9e-18 94.4 105 53.3
Manes.02G084300 Manihot esculenta HOM05D006973 ORTHO05D008636 6.9e-18 94.4 134 47.8
Phvul.008G191400 Phaseolus vulgaris HOM05D006973 ORTHO05D008636 6.9e-18 94.4 65 70.8
FAN02G1229 Fragaria x ananassa HOM05D006973 ORTHO05D008636 9.0e-18 94.0 137 46.7
Prupe.3G172700 Prunus persica HOM05D006973 ORTHO05D008636 9.0e-18 94.0 143 46.9
FvH4_6g38230 Fragaria vesca HOM05D006973 ORTHO05D008636 2.6e-17 92.4 137 46.0
FAN14G5571 Fragaria x ananassa HOM05D006973 ORTHO05D008636 2.6e-17 92.4 137 46.0
QL08p044096 Quercus lobata HOM05D006973 ORTHO05D008636 2.6e-17 92.4 121 48.8
Potri.002G060100 Populus trichocarpa HOM05D006973 ORTHO05D008636 3.4e-17 92.0 132 47.7
Medtr5g091690 Medicago truncatula HOM05D006973 ORTHO05D008636 7.6e-17 90.9 66 66.7
Nn6g34359 Nelumbo nucifera HOM05D006973 ORTHO05D008636 1.3e-16 90.1 127 48.0
Thecc.01G161800 Theobroma cacao HOM05D006973 ORTHO05D008636 2.9e-16 89.0 132 47.7
LjContig00310g0018130 Lotus japonicus HOM05D006973 ORTHO05D008636 3.8e-16 88.6 61 73.8
Duzib187G1733 Durio zibethinus HOM05D006973 ORTHO05D008636 5.0e-16 88.2 116 50.0
TPR.G12665 Trifolium pratense HOM05D006973 ORTHO05D008636 5.0e-16 88.2 124 45.2
Lalb_Chr17g0348291 Lupinus albus HOM05D006973 ORTHO05D008636 8.5e-16 87.4 68 63.2
MBI07_g21782_MAGBIO Magnolia biondii HOM05D006973 ORTHO05D008636 8.5e-16 87.4 66 65.2
MBI07_g41313_MAGBIO Magnolia biondii HOM05D006973 ORTHO05D008636 8.5e-16 87.4 66 65.2
Potri.005G201500 Populus trichocarpa HOM05D006973 ORTHO05D008636 1.1e-15 87.0 140 43.6
Nn3g20922 Nelumbo nucifera HOM05D006973 ORTHO05D008636 4.2e-15 85.1 66 63.6
Duzib147G0021 Durio zibethinus HOM05D006973 ORTHO05D008636 5.5e-15 84.7 64 67.2
TAR629G2498 Trochodendron aralioides HOM05D006973 ORTHO05D008636 5.5e-15 84.7 108 47.2
Gohir.A11G060500 Gossypium hirsutum HOM05D006973 ORTHO05D008636 7.2e-15 84.3 124 42.7
PGR042G1786 Punica granatum HOM05D006973 ORTHO05D008636 9.4e-15 84.0 58 72.4
Peaxi162Scf00111g00009 Petunia axillaris HOM05D006973 ORTHO05D008636 1.2e-14 83.6 69 60.9
Nitab4.5_0001675g0100 Nicotiana tabacum HOM05D006973 ORTHO05D008636 1.6e-14 83.2 96 47.9
Oeu020059.1 Olea europaea HOM05D006973 ORTHO05D008636 1.6e-14 83.2 69 62.3
Gohir.D11G064600 Gossypium hirsutum HOM05D006973 ORTHO05D008636 4.6e-14 81.6 124 42.7
Lalb_Chr04g0248771 Lupinus albus HOM05D006973 ORTHO05D008636 6.1e-14 81.3 137 43.1
Ciclev10033026m.g Citrus clementina HOM05D006973 ORTHO05D008636 7.9e-14 80.9 65 61.5
Rhsim06G0116300 Rhododendron simsii HOM05D006973 ORTHO05D008636 7.9e-14 80.9 123 48.0
Gorai.007G069800 Gossypium raimondii HOM05D006973 ORTHO05D008636 1.0e-13 80.5 124 42.7
CAN.G585.39 Capsicum annuum HOM05D006973 ORTHO05D008636 1.4e-13 80.1 64 65.6
DCAR_013315 Daucus carota HOM05D006973 ORTHO05D008636 1.4e-13 80.1 65 63.1
BcaC02g07217 Brassica carinata HOM05D006973 ORTHO05D008636 1.8e-13 79.7 69 55.1
A04p32440 Brassica napus HOM05D006973 ORTHO05D008636 1.8e-13 79.7 69 55.1
C04p69950 Brassica napus HOM05D006973 ORTHO05D008636 1.8e-13 79.7 69 55.1
BolC4t28495H Brassica oleracea HOM05D006973 ORTHO05D008636 1.8e-13 79.7 69 55.1
BraA04t18696Z Brassica rapa HOM05D006973 ORTHO05D008636 1.8e-13 79.7 69 55.1
CANSAT64G0305 Cannabis sativa HOM05D006973 ORTHO05D008636 1.8e-13 79.7 55 72.7
Oeu040038.1 Olea europaea HOM05D006973 ORTHO05D008636 1.8e-13 79.7 69 60.9
Lalb_Chr10g0106711 Lupinus albus HOM05D006973 ORTHO05D008636 3.9e-13 78.6 61 60.7
Nitab4.5_0003934g0010 Nicotiana tabacum HOM05D006973 ORTHO05D008636 3.9e-13 78.6 64 62.5
Actinidia32515 Actinidia chinensis HOM05D006973 ORTHO05D008636 5.1e-13 78.2 121 42.1
Aqoxy4G00147 Aquilegia oxysepala HOM05D006973 ORTHO05D008636 8.8e-13 77.4 69 52.2
BcaB06g29268 Brassica carinata HOM05D006973 ORTHO05D008636 8.8e-13 77.4 69 53.6
BcaB06g29270 Brassica carinata HOM05D006973 ORTHO05D008636 8.8e-13 77.4 69 53.6
A03p23820 Brassica napus HOM05D006973 ORTHO05D008636 8.8e-13 77.4 123 39.0
BraA03t11597Z Brassica rapa HOM05D006973 ORTHO05D008636 8.8e-13 77.4 123 39.0
BraA05t19306Z Brassica rapa HOM05D006973 ORTHO05D008636 1.1e-12 77.0 69 53.6
Atru.chr6.2093 Acer truncatum HOM05D006973 ORTHO05D008636 1.5e-12 76.6 61 60.7
Carub.0004s2531 Capsella rubella HOM05D006973 ORTHO05D008636 2.5e-12 75.9 119 40.3
Cc05_g09430 Coffea canephora HOM05D006973 ORTHO05D008636 2.5e-12 75.9 101 47.5
PGSC0003DMG400017344 Solanum tuberosum HOM05D006973 ORTHO05D008636 2.5e-12 75.9 61 62.3
A05p03160 Brassica napus HOM05D006973 ORTHO05D008636 3.3e-12 75.5 69 53.6
Solyc07g056360.1 Solanum lycopersicum HOM05D006973 ORTHO05D008636 5.7e-12 74.7 61 59.0
MSTRG.14293 Avicennia marina HOM05D006973 ORTHO05D008636 7.4e-12 74.3 100 47.0
BcaB02g08235 Brassica carinata HOM05D006973 ORTHO05D008636 7.4e-12 74.3 89 47.2
A04p02340 Brassica napus HOM05D006973 ORTHO05D008636 9.7e-12 73.9 115 40.9
Thhalv10006323m.g Eutrema salsugineum HOM05D006973 ORTHO05D008636 1.3e-11 73.6 121 39.7
Sopen07g029740 Solanum pennellii HOM05D006973 ORTHO05D008636 1.3e-11 73.6 61 57.4
BraA04t15963Z Brassica rapa HOM05D006973 ORTHO05D008636 2.2e-11 72.8 115 40.0
AT3G58850 Arabidopsis thaliana HOM05D006973 ORTHO05D008636 2.8e-11 72.4 63 57.1
CSS0041461 Camellia sinensis var. sinensis HOM05D006973 ORTHO05D008636 2.8e-11 72.4 66 57.6
BcaC02g10032 Brassica carinata HOM05D006973 ORTHO05D008636 3.7e-11 72.0 117 40.2
C04p33710 Brassica napus HOM05D006973 ORTHO05D008636 3.7e-11 72.0 117 40.2
BolC4t24939H Brassica oleracea HOM05D006973 ORTHO05D008636 3.7e-11 72.0 117 40.2
Sp5g04010 Schrenkiella parvula HOM05D006973 ORTHO05D008636 3.7e-11 72.0 122 39.3
Aa31LG1G24640 Aethionema arabicum HOM05D006973 ORTHO05D008636 4.8e-11 71.6 61 54.1
CARHR169260 Cardamine hirsuta HOM05D006973 ORTHO05D008636 4.8e-11 71.6 69 49.3
Thhalv10017430m.g Eutrema salsugineum HOM05D006973 ORTHO05D008636 8.2e-11 70.9 61 55.7
C03p28410 Brassica napus HOM05D006973 ORTHO05D008636 1.4e-10 70.1 124 37.9
BolC3t15210H Brassica oleracea HOM05D006973 ORTHO05D008636 1.4e-10 70.1 124 37.9
Carub.0005s2563 Capsella rubella HOM05D006973 ORTHO05D008636 1.4e-10 70.1 124 41.1
CARHR137940 Cardamine hirsuta HOM05D006973 ORTHO05D008636 1.4e-10 70.1 120 39.2
AL4G41480 Arabidopsis lyrata HOM05D006973 ORTHO05D008636 1.8e-10 69.7 61 54.1
AL713U10010 Arabidopsis lyrata HOM05D006973 ORTHO05D008636 1.8e-10 69.7 61 54.1
BcaB01g03419 Brassica carinata HOM05D006973 ORTHO05D008636 1.8e-10 69.7 59 55.9
BcaC02g12446 Brassica carinata HOM05D006973 ORTHO05D008636 1.8e-10 69.7 117 38.5
BolC4t22017H Brassica oleracea HOM05D006973 ORTHO05D008636 1.8e-10 69.7 117 38.5
C04p03810 Brassica napus HOM05D006973 ORTHO05D008636 2.4e-10 69.3 117 38.5
Sp4g25000 Schrenkiella parvula HOM05D006973 ORTHO05D008636 2.4e-10 69.3 58 56.9
AT2G42870 Arabidopsis thaliana HOM05D006973 ORTHO05D008636 3.1e-10 68.9 61 52.5
A09p51360 Brassica napus HOM05D006973 ORTHO05D008636 5.3e-10 68.2 60 53.3
BraA09t40577Z Brassica rapa HOM05D006973 ORTHO05D008636 5.3e-10 68.2 60 53.3
BcaC07g40299 Brassica carinata HOM05D006973 ORTHO05D008636 2.0e-09 66.2 57 56.1
C08p34140 Brassica napus HOM05D006973 ORTHO05D008636 2.0e-09 66.2 57 56.1
BolC8t51013H Brassica oleracea HOM05D006973 ORTHO05D008636 2.0e-09 66.2 57 56.1
MBI10_g03529_MAGBIO Magnolia biondii HOM05D006973 ORTHO05D008636 2.0e-09 66.2 54 57.4
BcaC07g40229 Brassica carinata HOM05D006973 ORTHO05D008636 2.6e-09 65.9 115 37.4
AL5G40650 Arabidopsis lyrata HOM05D006973 ORTHO05D008636 3.4e-09 65.5 122 37.7
Aa31LG10G13410 Aethionema arabicum HOM05D006973 ORTHO05D008636 1.7e-08 63.2 59 49.2
arahy.Tifrunner.gnm1.ann1.9T2B0R Arachis hypogaea HOM05D006973 ORTHO05D008636 2.2e-08 62.8 53 58.5
arahy.Tifrunner.gnm1.ann1.D7Q1BT Arachis hypogaea HOM05D006973 ORTHO05D008636 3.8e-08 62.0 54 55.6
arahy.Tifrunner.gnm1.ann1.SG1KTY Arachis hypogaea HOM05D006973 ORTHO05D008636 3.8e-08 62.0 54 55.6
SEGI_09603 Sequoiadendron giganteum HOM05D001624 ORTHO05D008636 5.0e-08 61.6 49 61.2
CDE04G0049 Ceratophyllum demersum HOM05D006973 ORTHO05D008636 6.5e-08 61.2 61 44.3
THA.LOC104803237 Tarenaya hassleriana HOM05D006973 ORTHO05D008636 1.1e-07 60.5 59 49.2
HPP92_024628 Vanilla planifolia HOM05D006973 ORTHO05D008636 4.2e-07 58.5 65 41.5
Eucgr.A01970 Eucalyptus grandis HOM05D006973 ORTHO05D008636 9.4e-07 57.4 69 50.7
SalBow3G4324 Salvia bowleyana HOM05D006547 ORTHO05D008112 1.6e-06 56.6 58 43.1
SEGI_27334 Sequoiadendron giganteum HOM05D001624 ORTHO05D008636 2.7e-06 55.8 49 55.1
Zm00001eb159180 Zea mays HOM05D006973 ORTHO05D008636 3.6e-06 55.5 54 50.0
Nn3g16936 Nelumbo nucifera HOM05D008443 ORTHO05D010587 6.1e-06 54.7 53 45.3
Lsat_1_v5_gn_3_47940 Lactuca sativa HOM05D008443 ORTHO05D010587 7.9e-06 54.3 50 48.0
MBI19_g03260_MAGBIO Magnolia biondii HOM05D001624 ORTHO05D001530 7.9e-06 54.3 48 52.1
Nn4g25552 Nelumbo nucifera HOM05D006547 ORTHO05D008112 7.9e-06 54.3 46 52.2


User provided reference genes

Program Settings