Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C014058.2 Cucumis melo HOM05D003762 ORTHO05D004374 4.4e-138 494.6 244 100.0
CsaV3_3G003760 Cucumis sativus L. HOM05D003762 ORTHO05D004374 1.4e-136 489.6 244 98.8
ClCG00G001180 Citrullus lanatus HOM05D003762 ORTHO05D004374 1.4e-131 473.0 244 94.7
ClCG10G003800 Citrullus lanatus HOM05D003762 ORTHO05D004374 1.4e-131 473.0 244 94.7
ClCG02G018290 Citrullus lanatus HOM05D003762 ORTHO05D004374 2.6e-106 389.0 244 78.7
MELO3C007348.2 Cucumis melo HOM05D003762 ORTHO05D004374 4.2e-104 381.7 208 93.3
Sed0021000 Sechium edule HOM05D003762 ORTHO05D004374 8.1e-100 367.5 245 74.7
Sed0000714 Sechium edule HOM05D003762 ORTHO05D004374 1.1e-88 330.5 217 73.7
CiPaw.09G152500 Carya illinoinensis HOM05D003762 ORTHO05D004374 7.6e-82 307.8 244 61.5
Cfa001979 Carpinus fangiana HOM05D003762 ORTHO05D004374 1.8e-78 296.6 244 59.8
QL01p011549 Quercus lobata HOM05D003762 ORTHO05D004374 1.8e-78 296.6 243 60.5
GSVIVG01004444001 Vitis vinifera HOM05D003762 ORTHO05D004374 6.3e-76 288.1 245 61.6
Potri.001G003700 Populus trichocarpa HOM05D003762 ORTHO05D004374 1.1e-75 287.3 244 56.6
Potri.018G000800 Populus trichocarpa HOM05D003762 ORTHO05D004374 1.8e-75 286.6 244 57.0
Glyma.18G279200 Glycine max HOM05D003762 ORTHO05D004374 2.4e-75 286.2 244 58.2
Sabra01G0002500 Salix brachista HOM05D003762 ORTHO05D004374 6.9e-75 284.6 244 55.7
Phvul.008G021700 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 2.0e-74 283.1 244 57.4
Manes.04G114300 Manihot esculenta HOM05D003762 ORTHO05D004374 5.9e-74 281.6 234 59.0
Thecc.06G021200 Theobroma cacao HOM05D003762 ORTHO05D004374 7.7e-74 281.2 244 56.6
arahy.Tifrunner.gnm1.ann1.VKA3KK Arachis hypogaea HOM05D003762 ORTHO05D004374 1.3e-73 280.4 244 54.5
Duzib160G0900 Durio zibethinus HOM05D003762 ORTHO05D004374 1.7e-73 280.0 244 57.0
arahy.Tifrunner.gnm1.ann1.IN3X4V Arachis hypogaea HOM05D003762 ORTHO05D004374 2.2e-73 279.6 244 54.5
VMungo1383G0008 Vigna mungo HOM05D003762 ORTHO05D004374 2.9e-73 279.3 244 56.6
Ciclev10026399m.g Citrus clementina HOM05D003762 ORTHO05D004374 1.4e-72 276.9 236 57.6
Prupe.1G576300 Prunus persica HOM05D003762 ORTHO05D004374 1.9e-72 276.6 238 57.6
Potri.003G033600 Populus trichocarpa HOM05D003762 ORTHO05D004374 5.5e-72 275.0 245 55.9
Prupe.5G067300 Prunus persica HOM05D003762 ORTHO05D004374 1.6e-71 273.5 238 57.1
CANSAT35G0296 Cannabis sativa HOM05D003762 ORTHO05D004374 1.1e-69 267.3 244 54.5
Nn1g05222 Nelumbo nucifera HOM05D003762 ORTHO05D004374 2.0e-69 266.5 237 59.1
GSVIVG01017309001 Vitis vinifera HOM05D003762 ORTHO05D004374 2.6e-69 266.2 238 59.2
TWI56G0980 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 1.7e-68 263.5 244 52.9
Atru.chr1.3040 Acer truncatum HOM05D003762 ORTHO05D004374 6.3e-68 261.5 236 54.7
Cc08_g05300 Coffea canephora HOM05D003762 ORTHO05D004374 8.2e-68 261.2 244 51.6
Gorai.005G071700 Gossypium raimondii HOM05D003762 ORTHO05D004374 4.5e-66 255.4 234 53.0
Gohir.A02G058000 Gossypium hirsutum HOM05D003762 ORTHO05D004374 1.0e-65 254.2 234 53.0
MSTRG.11877 Avicennia marina HOM05D003762 ORTHO05D004374 1.7e-65 253.4 236 51.3
Gohir.D02G063800 Gossypium hirsutum HOM05D003762 ORTHO05D004374 2.9e-65 252.7 234 52.6
Cpa.g.sc37.21 Carica papaya HOM05D003762 ORTHO05D004374 3.8e-65 252.3 234 53.4
Aqoxy6G02090 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 5.0e-65 251.9 236 55.1
MD15G1431400 Malus domestica HOM05D003762 ORTHO05D004374 8.5e-65 251.1 201 59.2
TWI36G0443 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 8.5e-65 251.1 244 51.2
Actinidia15994 Actinidia chinensis HOM05D003762 ORTHO05D004374 1.9e-64 250.0 243 52.3
Lalb_Chr17g0343451 Lupinus albus HOM05D003762 ORTHO05D004374 4.2e-64 248.8 234 49.1
Dinv08128 Davidia involucrata HOM05D003762 ORTHO05D004374 5.5e-64 248.4 243 53.1
CSS0030442 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 9.4e-64 247.7 244 52.9
CSS0038493 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 9.4e-64 247.7 244 53.3
Migut.J01128 Erythranthe guttata HOM05D003762 ORTHO05D004374 1.6e-63 246.9 239 51.5
Lj1g0002607 Lotus japonicus HOM05D003762 ORTHO05D004374 2.1e-63 246.5 246 51.2
vmacro11452 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 3.6e-63 245.7 244 53.3
Rhsim05G0080000 Rhododendron simsii HOM05D003762 ORTHO05D004374 6.1e-63 245.0 244 52.0
Haze_16536 Corylus avellana HOM05D003762 ORTHO05D004374 8.0e-63 244.6 215 57.7
Oeu056611.1 Olea europaea HOM05D003762 ORTHO05D004374 8.0e-63 244.6 242 51.7
COL.COLO4_12944 Corchorus olitorius HOM05D003762 ORTHO05D004374 1.0e-62 244.2 250 50.4
Hma1.2p1_0515F.1_g170140 Hydrangea macrophylla HOM05D003762 ORTHO05D004374 5.2e-62 241.9 241 52.3
FAN05G3809 Fragaria x ananassa HOM05D003762 ORTHO05D004374 6.7e-62 241.5 244 49.2
FAN14G5252 Fragaria x ananassa HOM05D003762 ORTHO05D004374 6.7e-62 241.5 244 49.2
FvH4_6g29950 Fragaria vesca HOM05D003762 ORTHO05D004374 8.8e-62 241.1 244 49.2
FAN09G0714 Fragaria x ananassa HOM05D003762 ORTHO05D004374 8.8e-62 241.1 244 49.2
Ca_06841_v3 Cicer arietinum L. HOM05D003762 ORTHO05D004374 1.1e-61 240.7 237 48.5
FAN02G0052 Fragaria x ananassa HOM05D003762 ORTHO05D004374 5.7e-61 238.4 244 48.8
Eucgr.J01004 Eucalyptus grandis HOM05D003762 ORTHO05D004374 1.7e-60 236.9 229 52.8
arahy.Tifrunner.gnm1.ann1.RFRX47 Arachis hypogaea HOM05D003762 ORTHO05D004374 6.3e-60 235.0 234 48.3
Eucgr.F01771 Eucalyptus grandis HOM05D003762 ORTHO05D004374 8.2e-60 234.6 234 49.1
arahy.Tifrunner.gnm1.ann1.1PQR27 Arachis hypogaea HOM05D003762 ORTHO05D004374 1.8e-59 233.4 234 48.7
ECA246G1447 Erigeron canadensis HOM05D000759 ORTHO05D000574 4.1e-59 232.3 234 46.2
arahy.Tifrunner.gnm1.ann1.3GPH34 Arachis hypogaea HOM05D003762 ORTHO05D004374 5.3e-59 231.9 214 51.4
CAN.G812.32 Capsicum annuum HOM05D003762 ORTHO05D004374 5.3e-59 231.9 243 46.1
Peaxi162Scf00053g00522 Petunia axillaris HOM05D003762 ORTHO05D004374 1.2e-58 230.7 243 49.0
Nitab4.5_0000255g0050 Nicotiana tabacum HOM05D003762 ORTHO05D004374 4.5e-58 228.8 242 47.1
Nitab4.5_0000898g0100 Nicotiana tabacum HOM05D003762 ORTHO05D004374 7.7e-58 228.0 243 48.1
Psat4g001640 Pisum sativum HOM05D003762 ORTHO05D004374 1.3e-57 227.3 244 47.5
Lsat_1_v5_gn_3_23460 Lactuca sativa HOM05D003762 ORTHO05D004374 2.2e-57 226.5 228 47.4
Sopen08g024260 Solanum pennellii HOM05D003762 ORTHO05D004374 2.2e-57 226.5 242 46.7
DCAR_002196 Daucus carota HOM05D003762 ORTHO05D004374 2.9e-57 226.1 244 45.9
PGR044G0538 Punica granatum HOM05D003762 ORTHO05D004374 6.5e-57 224.9 236 50.0
THA.LOC104798921 Tarenaya hassleriana HOM05D003762 ORTHO05D004374 6.5e-57 224.9 238 48.7
Phvul.010G127200 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 1.5e-56 223.8 236 47.9
MBI14_g44482_MAGBIO Magnolia biondii HOM05D003762 ORTHO05D004374 3.2e-56 222.6 237 47.7
Rhsim11G0183700 Rhododendron simsii HOM05D003762 ORTHO05D004374 4.2e-56 222.2 237 49.8
Aqoxy6G01949 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 5.5e-56 221.9 234 47.0
SGA_v2.0_scaffold120G32921 Striga asiatica HOM05D003762 ORTHO05D004374 1.2e-55 220.7 235 49.4
RcHm_v2.0_Chr6g0271261 Rosa chinensis HOM05D003762 ORTHO05D004374 1.6e-55 220.3 244 45.5
RcHm_v2.0_Chr2g0135951 Rosa chinensis HOM05D003762 ORTHO05D004374 2.7e-55 219.5 244 45.5
RcHm_v2.0_Chr6g0271271 Rosa chinensis HOM05D003762 ORTHO05D004374 3.6e-55 219.2 244 45.5
SGA_v2.0_scaffold146G36137 Striga asiatica HOM05D003762 ORTHO05D004374 3.6e-55 219.2 241 48.1
PGSC0003DMG402007612 Solanum tuberosum HOM05D003762 ORTHO05D004374 4.7e-55 218.8 242 45.9
Glyma.07G041800 Glycine max HOM05D003762 ORTHO05D004374 1.4e-54 217.2 234 45.3
TPR.G19896 Trifolium pratense HOM05D003762 ORTHO05D004374 2.3e-54 216.5 244 44.3
Sp2g23520 Schrenkiella parvula HOM05D003762 ORTHO05D004374 4.0e-54 215.7 236 47.0
Aa31sc38G110 Aethionema arabicum HOM05D003762 ORTHO05D004374 6.7e-54 214.9 234 46.2
HanXRQChr17g0537091 Helianthus annuus HOM05D003762 ORTHO05D004374 6.7e-54 214.9 201 48.3
Thhalv10005351m.g Eutrema salsugineum HOM05D003762 ORTHO05D004374 1.2e-53 214.2 236 47.5
HPP92_015034 Vanilla planifolia HOM05D003762 ORTHO05D004374 1.5e-53 213.8 228 49.6
A06p34610 Brassica napus HOM05D003762 ORTHO05D004374 2.6e-53 213.0 236 48.3
BraA06t26389Z Brassica rapa HOM05D003762 ORTHO05D004374 2.6e-53 213.0 236 48.3
Glyma.09G089900 Glycine max HOM05D003762 ORTHO05D004374 3.3e-53 212.6 248 45.2
C07p43880 Brassica napus HOM05D003762 ORTHO05D004374 4.4e-53 212.2 236 47.9
ECA240G1229 Erigeron canadensis HOM05D003762 ORTHO05D004374 4.4e-53 212.2 234 45.3
BcaNung01845 Brassica carinata HOM05D003762 ORTHO05D004374 5.7e-53 211.8 236 47.9
BolC7t44916H Brassica oleracea HOM05D003762 ORTHO05D004374 5.7e-53 211.8 236 47.9
Lj8P331T26 Lonicera japonica HOM05D003762 ORTHO05D004374 9.7e-53 211.1 198 51.0
PGSC0003DMG400003846 Solanum tuberosum HOM05D003762 ORTHO05D004374 2.2e-52 209.9 245 45.3
PSO170G1737 Papaver somniferum HOM05D003762 ORTHO05D004374 3.7e-52 209.1 240 48.3
HanXRQChr03g0081311 Helianthus annuus HOM05D003762 ORTHO05D004374 4.8e-52 208.8 236 44.9
DCAR_030901 Daucus carota HOM05D003762 ORTHO05D004374 4.1e-51 205.7 245 42.0
AT5G23710 Arabidopsis thaliana HOM05D003762 ORTHO05D004374 7.0e-51 204.9 236 47.0
Sc24g0003260 Simmondsia chinensis HOM05D003762 ORTHO05D004374 7.0e-51 204.9 246 44.7
Aa31LG11G3050 Aethionema arabicum HOM05D003762 ORTHO05D004374 1.6e-50 203.8 235 45.1
PSO455G0078 Papaver somniferum HOM05D003762 ORTHO05D004374 1.6e-50 203.8 242 45.9
SalBow2G2359 Salvia bowleyana HOM05D003762 ORTHO05D004374 2.7e-50 203.0 245 42.0
AUR62024643 Chenopodium quinoa HOM05D003762 ORTHO05D004374 4.5e-50 202.2 245 44.1
Ciclev10009494m.g Citrus clementina HOM05D003762 ORTHO05D004374 5.0e-49 198.7 243 44.0
Peaxi162Scf00573g00044 Petunia axillaris HOM05D003762 ORTHO05D004374 6.5e-49 198.4 232 44.4
Atru.chr1.3022 Acer truncatum HOM05D003762 ORTHO05D004374 1.1e-48 197.6 155 56.8
TAR625G0731 Trochodendron aralioides HOM05D003762 ORTHO05D004374 1.9e-48 196.8 203 49.3
Hund13161 Selenicereus undatus HOM05D003762 ORTHO05D004374 7.2e-48 194.9 244 44.7
Ah.03g133930 Amaranthus hybridus HOM05D003762 ORTHO05D004374 2.7e-47 193.0 237 44.7
BolC9t53671H Brassica oleracea HOM05D003762 ORTHO05D004374 2.7e-47 193.0 235 45.1
Carub.0006s2146 Capsella rubella HOM05D003762 ORTHO05D004374 1.4e-46 190.7 236 44.9
AL6G34980 Arabidopsis lyrata HOM05D003762 ORTHO05D004374 1.8e-46 190.3 236 44.5
TPR.G20064 Trifolium pratense HOM05D003762 ORTHO05D004374 1.8e-46 190.3 242 41.7
BcaC04g23509 Brassica carinata HOM05D003762 ORTHO05D004374 8.8e-46 188.0 232 44.0
Medtr7g109780 Medicago truncatula HOM05D003762 ORTHO05D004374 8.8e-46 188.0 195 45.1
TAR636G2311 Trochodendron aralioides HOM05D003762 ORTHO05D004374 1.2e-45 187.6 152 57.2
CARHR189840 Cardamine hirsuta HOM05D003762 ORTHO05D004374 1.5e-45 187.2 237 43.5
BraA09t36329Z Brassica rapa HOM05D003762 ORTHO05D004374 5.7e-45 185.3 237 45.6
QL03p059502 Quercus lobata HOM05D003762 ORTHO05D004374 2.8e-44 183.0 227 40.5
FAN09G1243 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.1e-43 181.0 242 40.5
HPP92_015113 Vanilla planifolia HOM05D003762 ORTHO05D004374 1.2e-42 177.6 152 53.3
C09p07550 Brassica napus HOM05D003762 ORTHO05D004374 2.0e-42 176.8 230 43.5
CAN.G1683.1 Capsicum annuum HOM05D003762 ORTHO05D004374 2.7e-42 176.4 214 41.1
A09p06830 Brassica napus HOM05D003762 ORTHO05D004374 1.0e-41 174.5 235 43.8
CAN.G2872.1 Capsicum annuum HOM05D003762 ORTHO05D004374 1.3e-41 174.1 214 41.1
ATR0580G255 Amborella trichopoda HOM05D003762 ORTHO05D004374 3.8e-41 172.6 230 39.1
Lsat_1_v5_gn_3_23440 Lactuca sativa HOM05D003762 ORTHO05D004374 5.0e-41 172.2 182 45.6
Oeu056610.1 Olea europaea HOM05D003762 ORTHO05D004374 8.6e-41 171.4 145 54.5
VMungo0331G0552 Vigna mungo HOM05D003762 ORTHO05D004374 8.6e-41 171.4 219 41.1
Medtr0003s0690 Medicago truncatula HOM05D003762 ORTHO05D004374 2.5e-40 169.9 179 42.5
Zm00001eb276730 Zea mays HOM05D003762 ORTHO05D004374 3.3e-40 169.5 215 37.7
Solyc08g075580.3 Solanum lycopersicum HOM05D003762 ORTHO05D004374 7.2e-40 168.3 150 50.0
Zm00001eb386260 Zea mays HOM05D003762 ORTHO05D004374 9.5e-40 167.9 216 37.5
vmacro16904 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 1.6e-39 167.2 165 47.9
BcaB04g19852 Brassica carinata HOM05D003762 ORTHO05D004374 2.8e-39 166.4 240 40.4
BcaB04g19853 Brassica carinata HOM05D003762 ORTHO05D004374 2.8e-39 166.4 240 40.4
Mapoly0090s0008 Marchantia polymorpha HOM05D003762 ORTHO05D004374 3.0e-38 162.9 218 37.2
AagrBONN_evm.TU.Sc2ySwM_228.1250 Anthoceros agrestis HOM05D003762 ORTHO05D004374 5.2e-38 162.2 219 37.9
QL06p036898 Quercus lobata HOM05D003762 ORTHO05D004374 2.0e-37 160.2 122 59.8
unitig_0.g2831 Utricularia gibba HOM05D003762 ORTHO05D004374 5.7e-37 158.7 214 39.3
PSO455G0143 Papaver somniferum HOM05D003762 ORTHO05D004374 1.3e-36 157.5 245 41.6
Pp3c22_6800 Physcomitrium patens HOM05D003762 ORTHO05D004374 1.7e-36 157.1 218 34.4
FAN02G2701 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.8e-35 153.7 220 39.1
Oeu039594.1 Olea europaea HOM05D003762 ORTHO05D004374 2.4e-35 153.3 174 47.1
Rhsim12G0192200 Rhododendron simsii HOM05D003762 ORTHO05D004374 1.1e-32 144.4 146 50.7
MD08G1239800 Malus domestica HOM05D003762 ORTHO05D004374 3.3e-32 142.9 119 58.0
Cre07.g314950 Chlamydomonas reinhardtii HOM05D003762 ORTHO05D004374 2.8e-31 139.8 221 33.5
MCO15G473 Micromonas commoda HOM05D003762 ORTHO05D004374 8.0e-31 138.3 227 32.6
VMungo0720G1683 Vigna mungo HOM05D003762 ORTHO05D004374 3.1e-30 136.3 140 44.3
Zm00001eb356740 Zea mays HOM05D003762 ORTHO05D004374 4.0e-30 136.0 192 34.4
FAN05G0849 Fragaria x ananassa HOM05D003762 ORTHO05D004374 2.7e-26 123.2 210 35.2
HanXRQChr03g0081131 Helianthus annuus HOM05D003762 ORTHO05D004374 2.1e-23 113.6 81 64.2
Atru.chr1.3024 Acer truncatum HOM05D003762 ORTHO05D004374 1.5e-21 107.5 115 48.7
Potri.003G221301 Populus trichocarpa HOM05D003762 ORTHO05D004374 1.3e-20 104.4 205 34.1
QL05p029016 Quercus lobata HOM05D003762 ORTHO05D004374 2.2e-20 103.6 87 52.9
Aqoxy6G01956 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 6.4e-20 102.1 89 50.6
Nitab4.5_0009310g0060 Nicotiana tabacum HOM05D003762 ORTHO05D004374 1.1e-19 101.3 93 47.3
Nn1g05046 Nelumbo nucifera HOM05D002280 ORTHO05D002322 1.9e-19 100.5 89 56.2
FvH4_6g41460 Fragaria vesca HOM05D003762 ORTHO05D004374 1.0e-17 94.7 141 38.3
AUR62011796 Chenopodium quinoa HOM05D003762 ORTHO05D004374 2.3e-17 93.6 131 42.7
FAN14G0588 Fragaria x ananassa HOM05D003762 ORTHO05D004374 3.0e-17 93.2 151 35.1
vmacro18986 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 7.3e-16 88.6 221 33.9
PSO384G2135 Papaver somniferum HOM05D003762 ORTHO05D004374 9.5e-16 88.2 101 40.6
Atru.chr1.3033 Acer truncatum HOM05D003762 ORTHO05D004374 1.6e-15 87.4 78 48.7
PSO384G3622 Papaver somniferum HOM05D003762 ORTHO05D004374 1.6e-15 87.4 100 41.0
VMungo1383G0391 Vigna mungo HOM05D003762 ORTHO05D004374 1.5e-13 80.9 106 35.8
SEGI_04069 Sequoiadendron giganteum HOM05D003762 ORTHO05D004374 1.7e-12 77.4 81 45.7
PRCOL_00004812 Prasinoderma coloniale HOM05D003762 ORTHO05D004374 4.9e-12 75.9 170 27.6
Os06g0603400 Oryza sativa ssp. japonica HOM05D003762 ORTHO05D004374 1.2e-10 71.2 55 56.4
TAR636G2069 Trochodendron aralioides HOM05D003762 ORTHO05D004374 2.1e-07 60.5 71 53.5
Nitab4.5_0009310g0070 Nicotiana tabacum HOM05D003419 ORTHO05D004374 1.8e-06 57.4 106 37.7


User provided reference genes

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