Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C014007.2 Cucumis melo HOM05D005378 ORTHO05D006986 1.7e-191 672.5 348 100.0
CsaV3_3G003410 Cucumis sativus L. HOM05D005378 ORTHO05D006986 1.6e-157 559.7 362 84.5
ClCG10G003380 Citrullus lanatus HOM05D005378 ORTHO05D006986 6.3e-138 494.6 360 76.9
ClCG00G000130 Citrullus lanatus HOM05D005378 ORTHO05D006986 1.4e-129 466.8 353 74.2
Sed0008997 Sechium edule HOM05D005378 ORTHO05D006986 8.8e-124 447.6 364 71.4
Cfa012056 Carpinus fangiana HOM05D005378 ORTHO05D006986 4.9e-114 415.2 362 66.3
Haze_09001 Corylus avellana HOM05D005378 ORTHO05D006986 1.5e-110 403.7 363 64.7
CANSAT21G0731 Cannabis sativa HOM05D005378 ORTHO05D006986 6.8e-108 394.8 363 63.6
FAN13G1015 Fragaria x ananassa HOM05D005378 ORTHO05D006986 5.7e-107 391.7 357 63.3
TAR629G1125 Trochodendron aralioides HOM05D005378 ORTHO05D006986 1.3e-106 390.6 364 62.1
Manes.02G028800 Manihot esculenta HOM05D005378 ORTHO05D006986 2.4e-105 386.3 364 61.8
QL12p016275 Quercus lobata HOM05D005378 ORTHO05D006986 3.2e-105 386.0 362 61.6
Phvul.003G217000 Phaseolus vulgaris HOM05D005378 ORTHO05D006986 5.4e-105 385.2 357 62.5
Duzib205G1930 Durio zibethinus HOM05D005378 ORTHO05D006986 2.7e-104 382.9 361 62.3
CiPaw.11G143700 Carya illinoinensis HOM05D005378 ORTHO05D006986 2.3e-103 379.8 363 60.6
Gohir.A08G176000 Gossypium hirsutum HOM05D005378 ORTHO05D006986 8.6e-103 377.9 331 63.7
Gorai.004G205500 Gossypium raimondii HOM05D005378 ORTHO05D006986 1.1e-102 377.5 332 63.3
Prupe.5G084900 Prunus persica HOM05D005378 ORTHO05D006986 1.1e-102 377.5 371 61.7
Gohir.D08G194800 Gossypium hirsutum HOM05D005378 ORTHO05D006986 1.5e-102 377.1 332 63.0
Hma1.2p1_2135F.1_g314860 Hydrangea macrophylla HOM05D005378 ORTHO05D006986 1.5e-102 377.1 364 61.3
Glyma.05G055000 Glycine max HOM05D005378 ORTHO05D006986 1.9e-102 376.7 357 61.6
RcHm_v2.0_Chr7g0200231 Rosa chinensis HOM05D005378 ORTHO05D006986 1.9e-102 376.7 362 61.0
arahy.Tifrunner.gnm1.ann1.1K1ZSN Arachis hypogaea HOM05D005378 ORTHO05D006986 5.6e-102 375.2 307 65.5
Lalb_Chr05g0225201 Lupinus albus HOM05D005378 ORTHO05D006986 5.6e-102 375.2 359 61.6
MD04G1072900 Malus domestica HOM05D005378 ORTHO05D006986 5.6e-102 375.2 366 60.4
TWI60G1116 Tripterygium wilfordii HOM05D005378 ORTHO05D006986 5.6e-102 375.2 360 60.6
Lj4g0009345 Lotus japonicus HOM05D005378 ORTHO05D006986 7.3e-102 374.8 357 60.8
arahy.Tifrunner.gnm1.ann1.2GQ0W5 Arachis hypogaea HOM05D005378 ORTHO05D006986 9.5e-102 374.4 307 65.5
Medtr4g101820 Medicago truncatula HOM05D005378 ORTHO05D006986 1.6e-101 373.6 359 61.6
Ca_12295_v3 Cicer arietinum L. HOM05D005378 ORTHO05D006986 3.6e-101 372.5 320 64.7
Psat4g069440 Pisum sativum HOM05D005378 ORTHO05D006986 3.6e-101 372.5 310 67.1
Thecc.03G266200 Theobroma cacao HOM05D005378 ORTHO05D006986 1.0e-100 370.9 360 61.4
Lj2A203G52 Lonicera japonica HOM05D005378 ORTHO05D006986 5.2e-100 368.6 378 60.1
Potri.001G113800 Populus trichocarpa HOM05D005378 ORTHO05D006986 6.8e-100 368.2 364 59.3
Cpa.g.sc29.47 Carica papaya HOM05D005378 ORTHO05D006986 3.4e-99 365.9 365 59.7
Eucgr.E00505 Eucalyptus grandis HOM05D005378 ORTHO05D006986 3.4e-99 365.9 324 63.6
FvH4_5g01090 Fragaria vesca HOM05D005378 ORTHO05D006986 3.4e-99 365.9 363 60.1
FAN18G4319 Fragaria x ananassa HOM05D005378 ORTHO05D006986 5.8e-99 365.2 360 60.3
TPR.G37594 Trifolium pratense HOM05D005378 ORTHO05D006986 2.2e-98 363.2 304 65.8
VMungo0251G1120 Vigna mungo HOM05D005378 ORTHO05D006986 6.4e-98 361.7 357 58.3
Aqoxy7G00527 Aquilegia oxysepala HOM05D005378 ORTHO05D006986 1.1e-97 360.9 362 58.6
Rhsim10G0118700 Rhododendron simsii HOM05D005378 ORTHO05D006986 1.1e-97 360.9 265 71.7
Atru.chr9.1492 Acer truncatum HOM05D005378 ORTHO05D006986 1.9e-97 360.1 353 58.9
DCAR_006775 Daucus carota HOM05D005378 ORTHO05D006986 1.9e-97 360.1 363 58.1
Oeu001912.1 Olea europaea HOM05D005378 ORTHO05D006986 3.2e-97 359.4 370 59.2
HanXRQChr02g0047721 Helianthus annuus HOM05D005378 ORTHO05D006986 5.4e-97 358.6 358 57.0
Potri.003G118400 Populus trichocarpa HOM05D005378 ORTHO05D006986 7.0e-97 358.2 306 62.7
AUR62017340 Chenopodium quinoa HOM05D005378 ORTHO05D006986 1.6e-96 357.1 359 58.5
Sabra01G0087000 Salix brachista HOM05D005378 ORTHO05D006986 1.6e-96 357.1 364 59.1
SGA_v2.0_scaffold37G14872 Striga asiatica HOM05D005378 ORTHO05D006986 2.7e-96 356.3 364 59.1
Ciclev10021134m.g Citrus clementina HOM05D005378 ORTHO05D006986 4.6e-96 355.5 333 60.1
FAN08G1559 Fragaria x ananassa HOM05D005378 ORTHO05D006986 4.6e-96 355.5 409 54.5
Sabra03G0082400 Salix brachista HOM05D005378 ORTHO05D006986 2.3e-95 353.2 366 57.1
Migut.A00880 Erythranthe guttata HOM05D005378 ORTHO05D006986 5.0e-95 352.1 371 58.2
Nn6g34347 Nelumbo nucifera HOM05D005378 ORTHO05D006986 6.6e-95 351.7 300 62.7
Sopen08g028190 Solanum pennellii HOM05D005378 ORTHO05D006986 1.1e-94 350.9 359 57.9
MSTRG.25561 Avicennia marina HOM05D005378 ORTHO05D006986 3.3e-94 349.4 365 57.3
SalBow6G7208 Salvia bowleyana HOM05D005378 ORTHO05D006986 3.3e-94 349.4 364 56.6
Solyc08g079830.4 Solanum lycopersicum HOM05D005378 ORTHO05D006986 4.3e-94 349.0 360 58.6
PGR031G2614 Punica granatum HOM05D005378 ORTHO05D006986 5.6e-94 348.6 370 55.1
PGR042G0099 Punica granatum HOM05D005378 ORTHO05D006986 7.3e-94 348.2 295 65.1
Hund14698 Selenicereus undatus HOM05D005378 ORTHO05D006986 1.6e-93 347.1 316 61.1
PGSC0003DMG400003914 Solanum tuberosum HOM05D005378 ORTHO05D006986 4.7e-93 345.5 357 58.0
ECA233G4179 Erigeron canadensis HOM05D005378 ORTHO05D006986 2.3e-92 343.2 361 55.1
EL10Ac5g12674 Beta vulgaris HOM05D005378 ORTHO05D006986 3.1e-92 342.8 369 55.0
THA.LOC104818281 Tarenaya hassleriana HOM05D005378 ORTHO05D006986 3.1e-92 342.8 302 60.6
MD00G1069800 Malus domestica HOM05D005378 ORTHO05D006986 4.0e-92 342.4 365 55.1
Nitab4.5_0012494g0030 Nicotiana tabacum HOM05D005378 ORTHO05D006986 1.5e-91 340.5 356 55.6
GSVIVG01019902001 Vitis vinifera HOM05D005378 ORTHO05D006986 3.4e-91 339.3 287 63.4
Cc08_g13620 Coffea canephora HOM05D005378 ORTHO05D006986 4.4e-91 339.0 358 57.0
MSTRG.12037 Avicennia marina HOM05D005378 ORTHO05D006986 5.8e-91 338.6 265 67.5
PSO782G2812 Papaver somniferum HOM05D005378 ORTHO05D006986 5.8e-91 338.6 356 57.0
Nitab4.5_0005167g0010 Nicotiana tabacum HOM05D005378 ORTHO05D006986 1.3e-90 337.4 359 55.4
Sc01g0008970 Simmondsia chinensis HOM05D005378 ORTHO05D006986 1.3e-90 337.4 297 60.9
C08p47320 Brassica napus HOM05D005378 ORTHO05D006986 1.1e-89 334.3 363 54.5
Oeu001910.1 Olea europaea HOM05D005378 ORTHO05D006986 2.4e-89 333.2 285 63.2
AL1G23870 Arabidopsis lyrata HOM05D005378 ORTHO05D006986 3.2e-89 332.8 365 53.7
CAN.G630.23 Capsicum annuum HOM05D005378 ORTHO05D006986 9.2e-89 331.3 354 55.4
BolC8t52274H Brassica oleracea HOM05D005378 ORTHO05D006986 1.2e-88 330.9 366 53.8
AUR62010552 Chenopodium quinoa HOM05D005378 ORTHO05D006986 1.6e-88 330.5 283 64.3
Sp1g11100 Schrenkiella parvula HOM05D005378 ORTHO05D006986 2.7e-88 329.7 361 54.0
Lsat_1_v5_gn_6_10640 Lactuca sativa HOM05D005378 ORTHO05D006986 1.0e-87 327.8 305 60.3
Aa31LG2G450 Aethionema arabicum HOM05D005378 ORTHO05D006986 3.0e-87 326.2 332 55.7
A09p63820 Brassica napus HOM05D005378 ORTHO05D006986 5.1e-87 325.5 363 54.3
BcaC07g41696 Brassica carinata HOM05D005378 ORTHO05D006986 8.6e-87 324.7 333 55.0
Zm00001eb073490 Zea mays HOM05D005378 ORTHO05D006986 3.3e-86 322.8 346 55.5
Peaxi162Scf00620g00241 Petunia axillaris HOM05D005378 ORTHO05D006986 5.6e-86 322.0 257 64.2
BcaB08g34272 Brassica carinata HOM05D005378 ORTHO05D006986 1.6e-85 320.5 356 54.5
BcaB03g13183 Brassica carinata HOM05D005378 ORTHO05D006986 2.8e-85 319.7 310 56.5
Carub.0001s1221 Capsella rubella HOM05D005378 ORTHO05D006986 3.6e-85 319.3 358 52.5
CARHR012800 Cardamine hirsuta HOM05D005378 ORTHO05D006986 3.6e-85 319.3 359 52.6
Ah.12g057930 Amaranthus hybridus HOM05D005378 ORTHO05D006986 4.7e-85 318.9 265 64.2
BraA09t41728Z Brassica rapa HOM05D005378 ORTHO05D006986 6.2e-85 318.5 323 55.7
C08p15470 Brassica napus HOM05D005378 ORTHO05D006986 2.3e-84 316.6 311 56.6
BolC8t49175H Brassica oleracea HOM05D005378 ORTHO05D006986 2.3e-84 316.6 311 56.6
COL.COLO4_23814 Corchorus olitorius HOM05D005378 ORTHO05D006986 1.2e-83 314.3 358 54.5
PSO478G1428 Papaver somniferum HOM05D005378 ORTHO05D006986 2.0e-83 313.5 365 52.6
AT1G12520 Arabidopsis thaliana HOM05D005378 ORTHO05D006986 3.4e-83 312.8 359 51.3
BraA08t35202Z Brassica rapa HOM05D005378 ORTHO05D006986 4.4e-83 312.4 323 55.4
A08p32790 Brassica napus HOM05D005378 ORTHO05D006986 7.6e-83 311.6 304 56.6
ATR0757G076 Amborella trichopoda HOM05D005378 ORTHO05D006986 1.7e-82 310.5 261 62.5
Thhalv10008232m.g Eutrema salsugineum HOM05D005378 ORTHO05D006986 5.4e-81 305.4 361 51.8
CDE01G0558 Ceratophyllum demersum HOM05D005378 ORTHO05D006986 1.9e-78 297.0 265 59.6
Actinidia02066 Actinidia chinensis HOM05D005378 ORTHO05D006986 3.1e-76 289.7 296 55.4
HPP92_021079 Vanilla planifolia HOM05D005378 ORTHO05D006986 5.8e-75 285.4 349 49.3
Os04g0573200 Oryza sativa ssp. japonica HOM05D005378 ORTHO05D006986 7.1e-73 278.5 241 61.4
AagrBONN_evm.TU.Sc2ySwM_228.1340 Anthoceros agrestis HOM05D005378 ORTHO05D006986 8.7e-71 271.6 260 54.6
Mapoly0127s0018 Marchantia polymorpha HOM05D005378 ORTHO05D006986 5.6e-70 268.9 283 51.9
Pp3c21_8100 Physcomitrium patens HOM05D005378 ORTHO05D006986 2.1e-69 266.9 260 54.2
SMO201G0146 Selaginella moellendorffii HOM05D005378 ORTHO05D006986 1.8e-68 263.8 252 57.5
Pp3c18_10490 Physcomitrium patens HOM05D005378 ORTHO05D006986 5.3e-68 262.3 260 55.0
Dinv37717 Davidia involucrata HOM05D005378 ORTHO05D006986 1.2e-64 251.1 263 59.3
CSS0049222 Camellia sinensis var. sinensis HOM05D005378 ORTHO05D006986 1.2e-59 234.6 260 56.9
Oeu001911.1 Olea europaea HOM05D005378 ORTHO05D006986 8.1e-53 211.8 158 69.0
SEGI_32640 Sequoiadendron giganteum HOM05D005378 ORTHO05D006986 1.1e-49 201.4 153 68.0
Actinidia14494 Actinidia chinensis HOM05D005378 ORTHO05D006986 1.4e-49 201.1 177 61.6
CBR_g27778 Chara braunii HOM05D005378 ORTHO05D006986 2.4e-44 183.7 307 38.4
BcaC04g22737 Brassica carinata HOM05D005378 ORTHO05D006986 4.5e-43 179.5 170 53.5
C09p15780 Brassica napus HOM05D005378 ORTHO05D006986 4.5e-43 179.5 170 53.5
BolC9t54490H Brassica oleracea HOM05D005378 ORTHO05D006986 4.5e-43 179.5 170 53.5
BcaC06g31923 Brassica carinata HOM05D005378 ORTHO05D006986 1.0e-42 178.3 197 50.3
A09p13280 Brassica napus HOM05D005378 ORTHO05D006986 2.1e-40 170.6 170 52.4
BraA09t36976Z Brassica rapa HOM05D005378 ORTHO05D006986 3.6e-40 169.9 170 52.4
unitig_744.g24326 Utricularia gibba HOM05D005378 ORTHO05D006986 3.0e-39 166.8 169 55.6
ClCG00G006560 Citrullus lanatus HOM05D005378 ORTHO05D006986 9.7e-38 161.8 86 90.7
CSS0006015 Camellia sinensis var. sinensis HOM05D005378 ORTHO05D006986 9.0e-36 155.2 92 79.3
Atru.chr3.15 Acer truncatum HOM05D000534 ORTHO05D000389 3.4e-35 153.3 119 68.9
Migut.D00824 Erythranthe guttata HOM05D005378 ORTHO05D006986 1.7e-34 151.0 187 50.8
Atru.chr7.434 Acer truncatum HOM05D005378 ORTHO05D006986 1.1e-33 148.3 120 68.3
Atru.chr1.3076 Acer truncatum HOM05D005378 ORTHO05D006986 1.2e-32 144.8 119 66.4
AagrBONN_evm.TU.Sc2ySwM_228.914 Anthoceros agrestis HOM05D005378 ORTHO05D006986 4.8e-29 132.9 169 46.7
MCO04G010 Micromonas commoda HOM05D005378 ORTHO05D006986 2.3e-23 114.0 272 34.2
Mapoly0152s0017 Marchantia polymorpha HOM05D005378 ORTHO05D006986 3.0e-23 113.6 287 32.8
unitig_22.g5478 Utricularia gibba HOM05D002871 ORTHO05D003307 2.6e-22 110.5 165 43.6
BolC4t24476H Brassica oleracea HOM05D005378 ORTHO05D006986 9.7e-22 108.6 66 77.3
TAR374G0182 Trochodendron aralioides HOM05D005378 ORTHO05D006986 3.1e-20 103.6 159 40.3
Pp3c17_14500 Physcomitrium patens HOM05D005378 ORTHO05D001264 2.0e-19 100.9 173 35.8
Atru.chr3.3516 Acer truncatum HOM05D005378 ORTHO05D006986 4.7e-16 89.7 75 62.7
Cfa026490 Carpinus fangiana HOM05D005378 ORTHO05D125958 2.7e-11 73.9 144 33.3
SMO340G0225 Selaginella moellendorffii HOM05D001405 ORTHO05D001264 1.4e-07 61.6 138 33.3
Peaxi162Scf00983g00213 Petunia axillaris HOM05D001405 ORTHO05D001264 6.8e-07 59.3 139 31.7
EL10Ac9g22624 Beta vulgaris HOM05D001405 ORTHO05D001264 8.8e-07 58.9 136 33.8
PSO801G0219 Papaver somniferum HOM05D001405 ORTHO05D001264 1.2e-06 58.5 142 31.7
CBR_g48191 Chara braunii HOM05D005378 ORTHO05D000399 1.5e-06 58.2 65 36.9
GSVIVG01031462001 Vitis vinifera HOM05D001405 ORTHO05D001264 1.5e-06 58.2 170 28.8
Hma1.2p1_0051F.1_g029480 Hydrangea macrophylla HOM05D001405 ORTHO05D001264 2.6e-06 57.4 139 32.4
Nitab4.5_0000173g0130 Nicotiana tabacum HOM05D001405 ORTHO05D001264 2.6e-06 57.4 140 30.7
Nitab4.5_0004871g0010 Nicotiana tabacum HOM05D001405 ORTHO05D001264 3.4e-06 57.0 140 31.4
HPP92_025381 Vanilla planifolia HOM05D001405 ORTHO05D001264 3.4e-06 57.0 136 33.1
Atru.chr5.2888 Acer truncatum HOM05D005378 ORTHO05D037884 4.4e-06 56.6 52 57.7
Thecc.09G298500 Theobroma cacao HOM05D001405 ORTHO05D001264 4.4e-06 56.6 146 31.5
PSO339G2292 Papaver somniferum HOM05D001405 ORTHO05D001264 5.7e-06 56.2 142 31.0
SalBow6G1068 Salvia bowleyana HOM05D001405 ORTHO05D001264 5.7e-06 56.2 139 31.7
CANSAT64G0315 Cannabis sativa HOM05D001405 ORTHO05D001264 7.5e-06 55.8 136 31.6
FvH4_3g30620 Fragaria vesca HOM05D001405 ORTHO05D001264 7.5e-06 55.8 136 32.4
SGA_v2.0_scaffold277G46694 Striga asiatica HOM05D001405 ORTHO05D001264 7.5e-06 55.8 139 30.9
Dinv16224 Davidia involucrata HOM05D001405 ORTHO05D001264 9.8e-06 55.5 139 31.7
Hund01520 Selenicereus undatus HOM05D001405 ORTHO05D001264 9.8e-06 55.5 139 30.9


User provided reference genes

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