Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C013914.2 Cucumis melo HOM05D003706 ORTHO05D004487 2.7e-126 455.3 222 100.0
ClCG10G002430 Citrullus lanatus HOM05D003706 ORTHO05D004487 9.7e-76 287.3 174 84.5
Sed0008996 Sechium edule HOM05D003706 ORTHO05D004487 8.0e-62 241.1 134 86.6
Glyma.17G145500 Glycine max HOM05D003706 ORTHO05D004487 1.4e-58 230.3 130 85.4
arahy.Tifrunner.gnm1.ann1.JF7LYS Arachis hypogaea HOM05D003706 ORTHO05D004487 3.1e-58 229.2 157 74.5
arahy.Tifrunner.gnm1.ann1.MI1D26 Arachis hypogaea HOM05D003706 ORTHO05D004487 3.1e-58 229.2 157 74.5
CsaV3_3G002450 Cucumis sativus L. HOM05D003706 ORTHO05D004487 4.1e-58 228.8 113 98.2
Gohir.D08G185500 Gossypium hirsutum HOM05D003706 ORTHO05D004487 9.2e-58 227.6 137 81.0
Thhalv10026137m.g Eutrema salsugineum HOM05D003706 ORTHO05D004487 2.0e-57 226.5 139 82.0
Glyma.05G063800 Glycine max HOM05D003706 ORTHO05D004487 2.0e-57 226.5 130 84.6
AT4G17510 Arabidopsis thaliana HOM05D003706 ORTHO05D004487 3.5e-57 225.7 133 83.5
Carub.0007s2389 Capsella rubella HOM05D003706 ORTHO05D004487 3.5e-57 225.7 132 84.8
BcaNung03459 Brassica carinata HOM05D003706 ORTHO05D004487 4.5e-57 225.3 135 82.2
BraA03t14138Z Brassica rapa HOM05D003706 ORTHO05D004487 4.5e-57 225.3 135 82.2
THA.LOC104813337 Tarenaya hassleriana HOM05D003706 ORTHO05D004487 4.5e-57 225.3 135 80.0
A03p50490 Brassica napus HOM05D003706 ORTHO05D004487 5.9e-57 224.9 135 82.2
C07p48810 Brassica napus HOM05D003706 ORTHO05D004487 5.9e-57 224.9 135 82.2
BolC7t45389H Brassica oleracea HOM05D003706 ORTHO05D004487 5.9e-57 224.9 135 82.2
Phvul.003G223748 Phaseolus vulgaris HOM05D003706 ORTHO05D004487 5.9e-57 224.9 130 83.8
Thecc.03G244800 Theobroma cacao HOM05D003706 ORTHO05D004487 7.7e-57 224.6 137 81.0
CARHR224210 Cardamine hirsuta HOM05D003706 ORTHO05D004487 1.0e-56 224.2 135 82.2
Gohir.A08G166700 Gossypium hirsutum HOM05D003706 ORTHO05D004487 1.0e-56 224.2 137 80.3
Gorai.004G194900 Gossypium raimondii HOM05D003706 ORTHO05D004487 1.0e-56 224.2 137 80.3
BcaC09g51635 Brassica carinata HOM05D003706 ORTHO05D004487 1.3e-56 223.8 133 83.5
BolC1t01081H Brassica oleracea HOM05D003706 ORTHO05D004487 1.3e-56 223.8 133 83.5
BcaNung00085 Brassica carinata HOM05D003706 ORTHO05D004487 1.7e-56 223.4 133 83.5
Lalb_Chr05g0214291 Lupinus albus HOM05D003706 ORTHO05D004487 2.3e-56 223.0 142 76.1
CSS0020819 Camellia sinensis var. sinensis HOM05D003706 ORTHO05D004487 2.9e-56 222.6 134 79.9
PGR042G3774 Punica granatum HOM05D003706 ORTHO05D004487 2.9e-56 222.6 130 81.5
A01p09590 Brassica napus HOM05D003706 ORTHO05D004487 3.8e-56 222.2 133 82.7
Glyma.01G206200 Glycine max HOM05D003706 ORTHO05D004487 3.8e-56 222.2 135 79.3
COL.COLO4_10024 Corchorus olitorius HOM05D003706 ORTHO05D004487 5.0e-56 221.9 137 78.8
Aa31LG6G250 Aethionema arabicum HOM05D003706 ORTHO05D004487 6.6e-56 221.5 135 77.8
PGSC0003DMG400024158 Solanum tuberosum HOM05D003706 ORTHO05D004487 6.6e-56 221.5 135 78.5
AL7G37120 Arabidopsis lyrata HOM05D003706 ORTHO05D004487 8.6e-56 221.1 133 82.7
Gohir.A12G214200 Gossypium hirsutum HOM05D003706 ORTHO05D004487 8.6e-56 221.1 132 81.1
Sopen06g021000 Solanum pennellii HOM05D003706 ORTHO05D004487 8.6e-56 221.1 135 78.5
C01p11160 Brassica napus HOM05D003706 ORTHO05D004487 1.1e-55 220.7 133 82.7
BraA01t00901Z Brassica rapa HOM05D003706 ORTHO05D004487 1.1e-55 220.7 133 82.0
Peaxi162Scf00190g01214 Petunia axillaris HOM05D003706 ORTHO05D004487 1.1e-55 220.7 133 80.5
Gohir.D12G216800 Gossypium hirsutum HOM05D003706 ORTHO05D004487 1.5e-55 220.3 132 81.1
Gorai.008G232400 Gossypium raimondii HOM05D003706 ORTHO05D004487 1.5e-55 220.3 132 81.1
QL12p009718 Quercus lobata HOM05D003706 ORTHO05D004487 1.5e-55 220.3 138 81.2
Actinidia25892 Actinidia chinensis HOM05D003706 ORTHO05D004487 1.9e-55 219.9 134 81.3
Dinv21679 Davidia involucrata HOM05D003706 ORTHO05D004487 2.5e-55 219.5 130 83.1
Potri.003G081000 Populus trichocarpa HOM05D003706 ORTHO05D004487 2.5e-55 219.5 134 80.6
Duzib068G0005 Durio zibethinus HOM05D003706 ORTHO05D004487 3.3e-55 219.2 130 82.3
Lalb_Chr16g0386511 Lupinus albus HOM05D003706 ORTHO05D004487 3.3e-55 219.2 131 80.9
Oeu040685.1 Olea europaea HOM05D003706 ORTHO05D004487 3.3e-55 219.2 132 81.8
Solyc06g060850.3 Solanum lycopersicum HOM05D003706 ORTHO05D004487 3.3e-55 219.2 135 77.8
Phvul.002G000300 Phaseolus vulgaris HOM05D003706 ORTHO05D004487 4.3e-55 218.8 128 83.6
Ca_21985_v3 Cicer arietinum L. HOM05D003706 ORTHO05D004487 5.6e-55 218.4 132 79.5
Ca_21998_v3 Cicer arietinum L. HOM05D003706 ORTHO05D004487 5.6e-55 218.4 132 79.5
Lalb_Chr05g0221021 Lupinus albus HOM05D003706 ORTHO05D004487 5.6e-55 218.4 131 79.4
Manes.02G042700 Manihot esculenta HOM05D003706 ORTHO05D004487 5.6e-55 218.4 130 81.5
Manes.01G085700 Manihot esculenta HOM05D003706 ORTHO05D004487 7.3e-55 218.0 137 78.8
QL12p009287 Quercus lobata HOM05D003706 ORTHO05D004487 7.3e-55 218.0 138 80.4
Sp7g16650 Schrenkiella parvula HOM05D003706 ORTHO05D004487 7.3e-55 218.0 139 80.6
TAR629G3078 Trochodendron aralioides HOM05D003706 ORTHO05D004487 7.3e-55 218.0 134 79.1
GSVIVG01004795001 Vitis vinifera HOM05D003706 ORTHO05D004487 7.3e-55 218.0 137 79.6
CiPaw.11G084300 Carya illinoinensis HOM05D003706 ORTHO05D004487 9.5e-55 217.6 138 79.7
TWI15G0458 Tripterygium wilfordii HOM05D003706 ORTHO05D004487 1.6e-54 216.9 134 79.1
TAR636G2892 Trochodendron aralioides HOM05D003706 ORTHO05D004487 1.6e-54 216.9 134 78.4
Carub.0007s2388 Capsella rubella HOM05D003706 ORTHO05D004487 2.1e-54 216.5 131 81.7
Eucgr.E00375 Eucalyptus grandis HOM05D003706 ORTHO05D004487 2.1e-54 216.5 136 77.2
FAN08G3606 Fragaria x ananassa HOM05D003706 ORTHO05D004487 2.1e-54 216.5 149 72.5
RcHm_v2.0_Chr7g0204661 Rosa chinensis HOM05D003706 ORTHO05D004487 2.8e-54 216.1 132 80.3
Dinv28848 Davidia involucrata HOM05D003706 ORTHO05D004487 3.6e-54 215.7 132 81.1
Dinv39188 Davidia involucrata HOM05D003706 ORTHO05D004487 3.6e-54 215.7 132 81.1
Nitab4.5_0000618g0150 Nicotiana tabacum HOM05D003706 ORTHO05D004487 3.6e-54 215.7 133 78.9
Lj4g0012322 Lotus japonicus HOM05D003706 ORTHO05D004487 8.0e-54 214.5 130 80.0
HanXRQChr16g0511641 Helianthus annuus HOM05D003706 ORTHO05D004487 1.0e-53 214.2 134 79.1
arahy.Tifrunner.gnm1.ann1.PS7EZR Arachis hypogaea HOM05D003706 ORTHO05D004487 1.4e-53 213.8 130 80.8
Lsat_1_v5_gn_9_30321 Lactuca sativa HOM05D003706 ORTHO05D004487 1.8e-53 213.4 134 78.4
Nitab4.5_0002206g0070 Nicotiana tabacum HOM05D003706 ORTHO05D004487 1.8e-53 213.4 133 78.2
Sabra03G0052000 Salix brachista HOM05D003706 ORTHO05D004487 1.8e-53 213.4 134 79.9
Atru.chr9.1245 Acer truncatum HOM05D003706 ORTHO05D004487 2.3e-53 213.0 132 77.3
AL7G37110 Arabidopsis lyrata HOM05D003706 ORTHO05D004487 2.3e-53 213.0 132 79.5
FAN13G2930 Fragaria x ananassa HOM05D003706 ORTHO05D004487 2.3e-53 213.0 132 79.5
FAN04G0187 Fragaria x ananassa HOM05D003706 ORTHO05D004487 4.0e-53 212.2 132 78.8
Hma1.2p1_0821F.1_g224200 Hydrangea macrophylla HOM05D003706 ORTHO05D004487 4.0e-53 212.2 132 81.1
MD04G1057500 Malus domestica HOM05D003706 ORTHO05D004487 4.0e-53 212.2 137 77.4
CAN.G62.15 Capsicum annuum HOM05D003706 ORTHO05D004487 5.2e-53 211.8 134 76.9
Cpa.g.sc89.37 Carica papaya HOM05D003706 ORTHO05D004487 6.8e-53 211.5 131 79.4
VMungo0251G2656 Vigna mungo HOM05D003706 ORTHO05D004487 6.8e-53 211.5 130 80.8
arahy.Tifrunner.gnm1.ann1.P7CRZW Arachis hypogaea HOM05D003706 ORTHO05D004487 8.9e-53 211.1 130 79.2
Medtr4g100360 Medicago truncatula HOM05D003706 ORTHO05D004487 8.9e-53 211.1 133 76.7
FAN18G2986 Fragaria x ananassa HOM05D003706 ORTHO05D004487 1.2e-52 210.7 132 78.0
MBI04_g41760_MAGBIO Magnolia biondii HOM05D003706 ORTHO05D004487 1.2e-52 210.7 138 73.2
Prupe.5G061500 Prunus persica HOM05D003706 ORTHO05D004487 1.2e-52 210.7 137 76.6
CANSAT21G1120 Cannabis sativa HOM05D003706 ORTHO05D004487 1.5e-52 210.3 138 75.4
Migut.A01026 Erythranthe guttata HOM05D003706 ORTHO05D004487 1.5e-52 210.3 130 79.2
CAN.G1856.6 Capsicum annuum HOM05D003706 ORTHO05D004487 2.0e-52 209.9 128 78.9
MD06G1051100 Malus domestica HOM05D003706 ORTHO05D004487 2.0e-52 209.9 138 77.5
FvH4_5g19870 Fragaria vesca HOM05D003706 ORTHO05D004487 2.6e-52 209.5 132 77.3
Solyc08g078140.3 Solanum lycopersicum HOM05D003706 ORTHO05D004487 3.4e-52 209.1 130 78.5
Aqoxy3G02726 Aquilegia oxysepala HOM05D003706 ORTHO05D004487 4.4e-52 208.8 140 70.7
Psat4g074200 Pisum sativum HOM05D003706 ORTHO05D004487 4.4e-52 208.8 130 78.5
TPR.G10445 Trifolium pratense HOM05D003706 ORTHO05D004487 4.4e-52 208.8 128 78.9
ECA240G2285 Erigeron canadensis HOM05D003706 ORTHO05D004487 5.7e-52 208.4 130 78.5
Nitab4.5_0006805g0040 Nicotiana tabacum HOM05D003706 ORTHO05D004487 7.5e-52 208.0 133 75.9
PSO782G4370 Papaver somniferum HOM05D003706 ORTHO05D004487 7.5e-52 208.0 141 69.5
PSO063G5263 Papaver somniferum HOM05D003706 ORTHO05D004487 9.8e-52 207.6 141 68.8
SGA_v2.0_scaffold104G30203 Striga asiatica HOM05D003706 ORTHO05D004487 9.8e-52 207.6 133 76.7
MSTRG.12138 Avicennia marina HOM05D003706 ORTHO05D004487 1.7e-51 206.8 131 78.6
AUR62007134 Chenopodium quinoa HOM05D003706 ORTHO05D004487 2.2e-51 206.5 128 77.3
Haze_07960 Corylus avellana HOM05D003706 ORTHO05D004487 2.2e-51 206.5 151 71.5
Ciclev10023537m.g Citrus clementina HOM05D003706 ORTHO05D004487 2.9e-51 206.1 138 73.9
PGSC0003DMG400026229 Solanum tuberosum HOM05D003706 ORTHO05D004487 2.9e-51 206.1 130 77.7
EL10Ac5g12313 Beta vulgaris HOM05D003706 ORTHO05D004487 3.7e-51 205.7 130 74.6
AUR62018878 Chenopodium quinoa HOM05D003706 ORTHO05D004487 3.7e-51 205.7 128 76.6
vmacro00025 Vaccinium macrocarpon HOM05D003706 ORTHO05D004487 1.8e-50 203.4 131 77.1
Duzib084G0672 Durio zibethinus HOM05D003706 ORTHO05D004487 2.4e-50 203.0 137 73.7
Ah.07g198590 Amaranthus hybridus HOM05D003706 ORTHO05D004487 3.2e-50 202.6 128 75.0
SalBow7G0213 Salvia bowleyana HOM05D003706 ORTHO05D004487 3.2e-50 202.6 131 75.6
Hund14510 Selenicereus undatus HOM05D003706 ORTHO05D004487 3.2e-50 202.6 133 74.4
Ciclev10022039m.g Citrus clementina HOM05D003706 ORTHO05D004487 7.0e-50 201.4 138 72.5
Peaxi162Scf00260g00418 Petunia axillaris HOM05D003706 ORTHO05D004487 2.0e-49 199.9 130 76.9
DCAR_000641 Daucus carota HOM05D003706 ORTHO05D004487 4.6e-49 198.7 130 73.1
Nitab4.5_0009301g0040 Nicotiana tabacum HOM05D003706 ORTHO05D004487 4.6e-49 198.7 132 74.2
CDE11G0530 Ceratophyllum demersum HOM05D003706 ORTHO05D004487 5.9e-49 198.4 135 69.6
Lj2C226G3 Lonicera japonica HOM05D003706 ORTHO05D004487 7.8e-49 198.0 132 75.0
Lalb_Chr00c54g0413631 Lupinus albus HOM05D003706 ORTHO05D004487 1.7e-48 196.8 176 59.1
Cc08_g11880 Coffea canephora HOM05D003706 ORTHO05D004487 2.3e-48 196.4 132 73.5
Oeu031158.1 Olea europaea HOM05D003706 ORTHO05D004487 5.0e-48 195.3 132 75.0
DCAR_004606 Daucus carota HOM05D003706 ORTHO05D004487 1.5e-47 193.7 128 72.7
CiPaw.12G048600 Carya illinoinensis HOM05D003706 ORTHO05D004487 1.9e-47 193.4 116 82.8
BcaC06g33562 Brassica carinata HOM05D003706 ORTHO05D004487 4.3e-47 192.2 115 83.5
unitig_0.g1053 Utricularia gibba HOM05D003706 ORTHO05D004487 3.6e-46 189.1 131 73.3
vmacro00024 Vaccinium macrocarpon HOM05D003706 ORTHO05D004487 3.6e-46 189.1 183 55.2
VMungo0251G2614 Vigna mungo HOM05D003706 ORTHO05D006202 1.8e-45 186.8 113 80.5
HPP92_002099 Vanilla planifolia HOM05D003706 ORTHO05D004487 2.3e-45 186.4 136 66.2
Cfa012680 Carpinus fangiana HOM05D003706 ORTHO05D004487 1.2e-44 184.1 129 73.6
arahy.Tifrunner.gnm1.ann1.FUBR3I Arachis hypogaea HOM05D003706 ORTHO05D004487 4.4e-44 182.2 135 67.4
Lalb_Chr00c24g0407441 Lupinus albus HOM05D003706 ORTHO05D004487 4.4e-44 182.2 113 77.0
TPR.G4685 Trifolium pratense HOM05D003706 ORTHO05D004487 1.3e-43 180.6 114 77.2
VMungo1215G2603 Vigna mungo HOM05D003706 ORTHO05D004487 1.7e-43 180.3 162 58.6
SGA_v2.0_scaffold199G41234 Striga asiatica HOM05D003706 ORTHO05D004487 3.7e-43 179.1 132 67.4
Zm00001eb427920 Zea mays HOM05D003706 ORTHO05D004487 4.1e-42 175.6 128 65.6
Sc22g0001060 Simmondsia chinensis HOM05D003706 ORTHO05D004487 5.4e-42 175.3 119 73.9
Nn1g00853 Nelumbo nucifera HOM05D003706 ORTHO05D004487 9.2e-42 174.5 116 73.3
Zm00001eb249260 Zea mays HOM05D003706 ORTHO05D004487 9.2e-42 174.5 133 61.7
BcaC06g33564 Brassica carinata HOM05D003706 ORTHO05D004487 1.6e-41 173.7 151 66.9
HPP92_014688 Vanilla planifolia HOM05D003706 ORTHO05D004487 1.6e-41 173.7 130 63.8
Zm00001eb186330 Zea mays HOM05D003706 ORTHO05D004487 1.6e-41 173.7 133 60.9
Os02g0654500 Oryza sativa ssp. japonica HOM05D003706 ORTHO05D004487 6.0e-41 171.8 132 62.1
ATR0057G038 Amborella trichopoda HOM05D003706 ORTHO05D004487 7.8e-41 171.4 121 68.6
AagrBONN_evm.TU.Sc2ySwM_368.2205 Anthoceros agrestis HOM05D003706 ORTHO05D004487 7.8e-41 171.4 137 62.8
Mapoly0021s0071 Marchantia polymorpha HOM05D003706 ORTHO05D004487 7.8e-41 171.4 135 68.1
Rhsim02G0172600 Rhododendron simsii HOM05D003480 ORTHO05D004487 1.3e-40 170.6 114 73.7
Pp3c3_8410 Physcomitrium patens HOM05D003706 ORTHO05D004487 4.7e-38 162.2 131 62.6
SMO364G0877 Selaginella moellendorffii HOM05D003706 ORTHO05D004487 8.9e-37 157.9 142 59.9
CBR_g30854 Chara braunii HOM05D003706 ORTHO05D004487 1.2e-36 157.5 131 61.1
Actinidia02181 Actinidia chinensis HOM05D003706 ORTHO05D004487 1.3e-32 144.1 93 78.5
Zm00001eb433120 Zea mays HOM05D003706 ORTHO05D004487 2.1e-30 136.7 134 50.7
SHI07667 Sapria himalayana HOM05D003706 ORTHO05D004487 2.0e-28 130.2 125 54.4
Cre03.g194250 Chlamydomonas reinhardtii HOM05D003706 ORTHO05D004487 2.6e-28 129.8 148 44.6
Ciclev10024619m.g Citrus clementina HOM05D003706 ORTHO05D004487 2.2e-27 126.7 87 70.1
MCO01G147 Micromonas commoda HOM05D003706 ORTHO05D004487 6.4e-27 125.2 135 46.7
TWI15G0745 Tripterygium wilfordii HOM05D003706 ORTHO05D004487 5.4e-26 122.1 82 73.2
Sopen08g026630 Solanum pennellii HOM05D003706 ORTHO05D004487 2.1e-25 120.2 74 75.7
arahy.Tifrunner.gnm1.ann1.77EYCF Arachis hypogaea HOM05D003706 ORTHO05D004487 2.4e-21 106.7 61 78.7
Cc11_g04870 Coffea canephora HOM05D003706 ORTHO05D004487 4.0e-21 105.9 87 65.5
Cc00_g03590 Coffea canephora HOM05D003706 ORTHO05D004487 1.0e-16 91.3 74 67.6
MBI04_g33725_MAGBIO Magnolia biondii HOM05D003706 ORTHO05D004487 1.6e-14 84.0 46 80.4
arahy.Tifrunner.gnm1.ann1.CH87W6 Arachis hypogaea HOM05D003706 ORTHO05D004487 2.1e-14 83.6 112 47.3
RcHm_v2.0_Chr7g0214021 Rosa chinensis HOM05D003706 ORTHO05D004487 2.8e-14 83.2 61 65.6
Os04g0667500 Oryza sativa ssp. japonica HOM05D003706 ORTHO05D004487 8.1e-14 81.6 66 57.6
PRCOL_00002923 Prasinoderma coloniale HOM05D003706 ORTHO05D004487 1.1e-13 81.3 128 37.5
TAR375G0973 Trochodendron aralioides HOM05D003706 ORTHO05D004487 2.2e-11 73.6 44 77.3
Cc01_g05720 Coffea canephora HOM05D003706 ORTHO05D004487 1.4e-10 70.9 47 68.1
Zm00001eb146790 Zea mays HOM05D005629 ORTHO05D003607 5.4e-10 68.9 92 42.4
Zm00001eb389020 Zea mays HOM05D003706 ORTHO05D004487 2.1e-09 67.0 56 55.4
Zm00001eb389030 Zea mays HOM05D003706 ORTHO05D004487 2.1e-09 67.0 56 55.4
Zm00001eb296140 Zea mays HOM05D003706 ORTHO05D004487 7.9e-09 65.1 51 60.8
Os04g0546400 Oryza sativa ssp. japonica HOM05D003706 ORTHO05D004487 1.1e-07 61.2 50 60.0
arahy.Tifrunner.gnm1.ann1.5G37N1 Arachis hypogaea HOM05D003706 ORTHO05D031576 2.8e-06 56.6 28 92.9
GSVIVG01005551001 Vitis vinifera HOM05D003706 ORTHO05D031576 2.8e-06 56.6 31 83.9
VMungo0331G1368 Vigna mungo HOM05D003706 ORTHO05D031576 3.6e-06 56.2 27 92.6
C07p48160 Brassica napus HOM05D003706 ORTHO05D004487 6.2e-06 55.5 41 73.2


User provided reference genes

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