Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C013369.2 Cucumis melo HOM05D006341 ORTHO05D000377 3.4e-272 941.0 459 100.0
CsaV3_7G000880 Cucumis sativus L. HOM05D006341 ORTHO05D000377 5.0e-252 874.0 444 95.0
Sed0009186 Sechium edule HOM05D006341 ORTHO05D000377 1.7e-223 779.2 462 83.5
ClCG02G004230 Citrullus lanatus HOM05D006341 ORTHO05D000377 1.6e-218 762.7 457 84.0
Duzib132G0346 Durio zibethinus HOM05D006341 ORTHO05D000377 4.1e-177 625.2 445 68.5
QL11p049167 Quercus lobata HOM05D006341 ORTHO05D000377 7.7e-176 620.9 453 67.3
Haze_02181 Corylus avellana HOM05D006341 ORTHO05D000377 1.1e-174 617.1 454 67.4
Haze_02174 Corylus avellana HOM05D006341 ORTHO05D000377 2.5e-174 615.9 454 67.2
COL.COLO4_17298 Corchorus olitorius HOM05D006341 ORTHO05D000377 1.2e-173 613.6 445 67.4
Dinv04950 Davidia involucrata HOM05D006341 ORTHO05D000377 3.6e-173 612.1 459 65.6
COL.COLO4_17179 Corchorus olitorius HOM05D006341 ORTHO05D000377 1.8e-172 609.8 445 67.2
Ciclev10028267m.g Citrus clementina HOM05D006341 ORTHO05D000377 3.9e-172 608.6 453 66.2
Thecc.02G064100 Theobroma cacao HOM05D006341 ORTHO05D000377 3.9e-172 608.6 446 67.5
Gorai.008G034900 Gossypium raimondii HOM05D006341 ORTHO05D000377 1.1e-171 607.1 445 66.3
Manes.11G082657 Manihot esculenta HOM05D006341 ORTHO05D000377 1.5e-171 606.7 447 68.0
Gohir.A12G038400 Gossypium hirsutum HOM05D006341 ORTHO05D000377 1.3e-170 603.6 445 65.8
Gohir.D12G033900 Gossypium hirsutum HOM05D006341 ORTHO05D000377 1.3e-170 603.6 445 65.8
FvH4_2g01620 Fragaria vesca HOM05D006341 ORTHO05D000377 1.6e-168 596.7 453 65.8
Actinidia00608 Actinidia chinensis HOM05D006341 ORTHO05D000377 2.0e-168 596.3 468 64.1
Prupe.8G162700 Prunus persica HOM05D006341 ORTHO05D000377 3.5e-168 595.5 448 66.5
RcHm_v2.0_Chr6g0244441 Rosa chinensis HOM05D006341 ORTHO05D000377 5.9e-168 594.7 452 64.8
TAR381G0106 Trochodendron aralioides HOM05D006341 ORTHO05D000377 7.7e-168 594.3 453 65.6
Atru.chr5.3271 Acer truncatum HOM05D006341 ORTHO05D000377 2.2e-167 592.8 452 64.6
CSS0004411 Camellia sinensis var. sinensis HOM05D006341 ORTHO05D000377 2.9e-167 592.4 452 64.8
Nn7g37263 Nelumbo nucifera HOM05D006341 ORTHO05D000377 1.5e-166 590.1 462 63.9
TWI53G1223 Tripterygium wilfordii HOM05D006341 ORTHO05D000377 1.5e-166 590.1 417 67.6
Sabra04G0114400 Salix brachista HOM05D006341 ORTHO05D000377 1.9e-166 589.7 450 65.8
FAN20G2467 Fragaria x ananassa HOM05D006341 ORTHO05D000377 2.5e-166 589.3 448 65.0
FAN24G0408 Fragaria x ananassa HOM05D006341 ORTHO05D000377 2.5e-166 589.3 452 65.3
RcHm_v2.0_Chr6g0244411 Rosa chinensis HOM05D006341 ORTHO05D000377 1.2e-165 587.0 452 65.0
Hma1.2p1_0032F.1_g019570 Hydrangea macrophylla HOM05D006341 ORTHO05D000377 1.6e-165 586.6 453 63.8
Potri.004G172100 Populus trichocarpa HOM05D006341 ORTHO05D000377 4.7e-165 585.1 457 64.8
Oeu006673.1 Olea europaea HOM05D006341 ORTHO05D000377 8.0e-165 584.3 461 64.9
MD05G1118100 Malus domestica HOM05D006341 ORTHO05D000377 1.0e-164 583.9 453 64.5
Sc08g0003080 Simmondsia chinensis HOM05D006341 ORTHO05D000377 2.6e-163 579.3 491 62.3
vmacro02264 Vaccinium macrocarpon HOM05D006341 ORTHO05D000377 2.8e-162 575.9 462 63.4
CANSAT25G3024 Cannabis sativa HOM05D006341 ORTHO05D000377 3.7e-162 575.5 453 63.1
Cc06_g16120 Coffea canephora HOM05D006341 ORTHO05D000377 4.8e-162 575.1 454 62.8
AUR62010072 Chenopodium quinoa HOM05D006341 ORTHO05D000377 1.8e-161 573.2 482 60.4
EL10Ac9g21414 Beta vulgaris HOM05D006341 ORTHO05D000377 4.1e-161 572.0 473 62.8
Hund06416 Selenicereus undatus HOM05D006341 ORTHO05D000377 1.3e-159 567.0 476 63.2
Solyc01g098460.4 Solanum lycopersicum HOM05D006341 ORTHO05D000377 1.3e-159 567.0 441 63.3
Peaxi162Scf00434g00625 Petunia axillaris HOM05D006341 ORTHO05D000377 1.7e-159 566.6 443 63.2
Nitab4.5_0001423g0020 Nicotiana tabacum HOM05D006341 ORTHO05D000377 2.2e-159 566.2 452 61.9
Nitab4.5_0001903g0070 Nicotiana tabacum HOM05D006341 ORTHO05D000377 5.0e-159 565.1 456 61.8
Sopen01g042030 Solanum pennellii HOM05D006341 ORTHO05D000377 1.5e-158 563.5 441 63.0
CAN.G134.236 Capsicum annuum HOM05D006341 ORTHO05D000377 2.5e-158 562.8 447 62.6
TPR.G31245 Trifolium pratense HOM05D006341 ORTHO05D000377 1.6e-157 560.1 451 62.1
Lj4g0012983 Lotus japonicus HOM05D006341 ORTHO05D000377 2.7e-157 559.3 450 63.6
Lj5A183G92 Lonicera japonica HOM05D006341 ORTHO05D000377 4.7e-157 558.5 472 62.9
Aqoxy5G01641 Aquilegia oxysepala HOM05D006341 ORTHO05D000377 1.0e-156 557.4 434 62.2
Psat7g085760 Pisum sativum HOM05D006341 ORTHO05D000377 1.5e-155 553.5 452 63.1
Ca_18243_v3 Cicer arietinum L. HOM05D006341 ORTHO05D000377 2.6e-155 552.7 450 63.1
PGR042G0052 Punica granatum HOM05D006341 ORTHO05D000377 3.4e-155 552.4 448 61.6
Thhalv10000146m.g Eutrema salsugineum HOM05D006341 ORTHO05D000377 1.3e-154 550.4 449 63.0
Lsat_1_v5_gn_8_124961 Lactuca sativa HOM05D006341 ORTHO05D000377 6.3e-154 548.1 442 59.0
Atru.chr5.3277 Acer truncatum HOM05D006341 ORTHO05D000377 1.1e-153 547.4 453 61.6
AL4G10160 Arabidopsis lyrata HOM05D006341 ORTHO05D000377 5.4e-153 545.0 449 62.8
THA.LOC104807791 Tarenaya hassleriana HOM05D006341 ORTHO05D000377 9.1e-153 544.3 451 59.4
Sp4g00210 Schrenkiella parvula HOM05D006341 ORTHO05D000377 2.7e-152 542.7 453 61.6
HanXRQChr17g0553851 Helianthus annuus HOM05D006341 ORTHO05D000377 4.5e-152 542.0 412 64.1
Migut.B00102 Erythranthe guttata HOM05D006341 ORTHO05D000377 2.9e-151 539.3 413 62.7
SGA_v2.0_scaffold58G20406 Striga asiatica HOM05D006341 ORTHO05D000377 5.0e-151 538.5 454 59.5
Eucgr.G01768 Eucalyptus grandis HOM05D006341 ORTHO05D000377 6.5e-151 538.1 453 61.1
arahy.Tifrunner.gnm1.ann1.MR7L4V Arachis hypogaea HOM05D006341 ORTHO05D000377 1.1e-150 537.3 419 62.5
Carub.0003s3491 Capsella rubella HOM05D006341 ORTHO05D000377 1.5e-150 537.0 449 61.7
AT2G21070 Arabidopsis thaliana HOM05D006341 ORTHO05D000377 1.9e-150 536.6 454 60.4
arahy.Tifrunner.gnm1.ann1.UN7M5W Arachis hypogaea HOM05D006341 ORTHO05D000377 7.2e-150 534.6 419 62.5
MSTRG.16892 Avicennia marina HOM05D006341 ORTHO05D000377 7.2e-150 534.6 456 59.9
Glyma.08G087700 Glycine max HOM05D006341 ORTHO05D000377 1.6e-149 533.5 451 61.0
Aa31LG7G15600 Aethionema arabicum HOM05D006341 ORTHO05D000377 2.8e-149 532.7 451 58.1
Ah.01g008830 Amaranthus hybridus HOM05D006341 ORTHO05D000377 4.7e-149 531.9 492 56.7
CARHR111910 Cardamine hirsuta HOM05D006341 ORTHO05D000377 1.4e-148 530.4 446 60.8
SalBow1G4312 Salvia bowleyana HOM05D006341 ORTHO05D000377 5.2e-148 528.5 456 58.6
ECA233G1460 Erigeron canadensis HOM05D006341 ORTHO05D000377 2.0e-147 526.6 413 62.7
MBI02_g27965_MAGBIO Magnolia biondii HOM05D006341 ORTHO05D000377 5.7e-147 525.0 459 60.1
C04p50300 Brassica napus HOM05D006341 ORTHO05D000377 2.8e-146 522.7 446 60.5
BolC4t26628H Brassica oleracea HOM05D006341 ORTHO05D000377 2.8e-146 522.7 446 60.5
Lalb_Chr13g0293551 Lupinus albus HOM05D006341 ORTHO05D000377 4.9e-146 521.9 476 57.4
GSVIVG01024058001 Vitis vinifera HOM05D006341 ORTHO05D000377 5.4e-145 518.5 451 59.2
Glyma.05G133200 Glycine max HOM05D006341 ORTHO05D000377 7.0e-145 518.1 452 60.4
BcaB06g27766 Brassica carinata HOM05D006341 ORTHO05D000377 1.6e-144 516.9 448 60.0
BraA04t17219Z Brassica rapa HOM05D006341 ORTHO05D000377 4.5e-144 515.4 446 59.6
CDE05G1540 Ceratophyllum demersum HOM05D006341 ORTHO05D000377 5.0e-143 511.9 468 56.6
Rhsim11G0190600 Rhododendron simsii HOM05D006341 ORTHO05D000377 6.6e-143 511.5 459 59.9
ATR0810G159 Amborella trichopoda HOM05D006341 ORTHO05D000377 2.5e-142 509.6 480 54.2
A04p15870 Brassica napus HOM05D006341 ORTHO05D000377 4.3e-142 508.8 446 59.4
VMungo0251G3227 Vigna mungo HOM05D006341 ORTHO05D000377 1.2e-141 507.3 434 59.9
Dinv39489 Davidia involucrata HOM05D006341 ORTHO05D000377 1.6e-141 506.9 451 57.6
unitig_60.g25823 Utricularia gibba HOM05D006341 ORTHO05D000377 1.3e-138 497.3 424 58.7
Os02g0121200 Oryza sativa ssp. japonica HOM05D006341 ORTHO05D000377 5.9e-136 488.4 447 56.8
HPP92_014019 Vanilla planifolia HOM05D006341 ORTHO05D000377 2.5e-134 483.0 462 54.1
QL11p048584 Quercus lobata HOM05D006341 ORTHO05D000377 3.3e-134 482.6 406 59.9
SEGI_13829 Sequoiadendron giganteum HOM05D006341 ORTHO05D000377 5.8e-131 471.9 488 50.8
SEGI_22420 Sequoiadendron giganteum HOM05D006341 ORTHO05D000377 5.8e-131 471.9 488 50.8
SHI05717 Sapria himalayana HOM05D006341 ORTHO05D000377 1.6e-128 463.8 467 52.7
Potri.009G131700 Populus trichocarpa HOM05D006341 ORTHO05D000377 8.3e-122 441.4 315 67.6
Phvul.002G189600 Phaseolus vulgaris HOM05D006341 ORTHO05D000377 4.6e-120 435.6 451 53.2
Mapoly0085s0033 Marchantia polymorpha HOM05D006341 ORTHO05D000377 1.4e-113 414.1 457 48.4
Pp3c8_21040 Physcomitrium patens HOM05D006341 ORTHO05D000377 1.6e-109 400.6 453 47.0
AagrBONN_evm.TU.Sc2ySwM_228.2682 Anthoceros agrestis HOM05D006341 ORTHO05D000377 4.7e-109 399.1 461 47.3
Nitab4.5_0008354g0020 Nicotiana tabacum HOM05D006341 ORTHO05D000377 3.5e-104 382.9 350 56.6
Atru.chr5.3221 Acer truncatum HOM05D006341 ORTHO05D000377 6.6e-103 378.6 280 65.0
Zm00001eb208320 Zea mays HOM05D006341 ORTHO05D000377 8.7e-103 378.3 373 54.4
Cpa.g.sc37.173 Carica papaya HOM05D006341 ORTHO05D000377 1.6e-101 374.0 448 48.7
SMO169G0079 Selaginella moellendorffii HOM05D006341 ORTHO05D000377 9.9e-99 364.8 406 48.5
CiPaw.06G124100 Carya illinoinensis HOM05D006341 ORTHO05D000377 2.9e-98 363.2 310 59.0
Ca_18241_v3 Cicer arietinum L. HOM05D006341 ORTHO05D000377 1.9e-97 360.5 382 51.8
FAN22G0308 Fragaria x ananassa HOM05D003409 ORTHO05D004015 2.1e-85 320.5 294 56.8
Carub.0004s0010 Capsella rubella HOM05D006341 ORTHO05D000377 2.0e-83 313.9 419 44.9
MCO01G168 Micromonas commoda HOM05D006341 ORTHO05D000377 1.2e-64 251.5 345 40.9
Sabra09G0102100 Salix brachista HOM05D006341 ORTHO05D000377 1.1e-62 245.0 308 48.1
Cre01.g044150 Chlamydomonas reinhardtii HOM05D006341 ORTHO05D000377 1.7e-61 241.1 398 36.4
PGSC0003DMG401028564 Solanum tuberosum HOM05D006341 ORTHO05D000377 1.3e-58 231.5 143 74.1
CBR_g23939 Chara braunii HOM05D006341 ORTHO05D000377 1.9e-49 201.1 815 25.2
PRCOL_00006207 Prasinoderma coloniale HOM05D006341 ORTHO05D000377 1.0e-39 168.7 334 33.5
FAN07G1625 Fragaria x ananassa HOM05D006341 ORTHO05D000377 5.9e-35 152.9 95 72.6
PGSC0003DMG402028564 Solanum tuberosum HOM05D006341 ORTHO05D000377 2.3e-31 141.0 147 49.7
Oeu063293.1 Olea europaea HOM05D006341 ORTHO05D000377 3.5e-27 127.1 159 50.3
Actinidia20497 Actinidia chinensis HOM05D006341 ORTHO05D000377 3.7e-21 107.1 77 68.8
Atru.chr5.3222 Acer truncatum HOM05D006341 ORTHO05D000377 3.9e-10 70.5 60 58.3


User provided reference genes

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