Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C013035.2 Cucumis melo HOM05D002864 ORTHO05D008485 4.5e-33 144.1 75 100.0
MELO3C000759.2 Cucumis melo HOM05D002864 ORTHO05D008485 1.1e-20 102.8 70 78.6
MELO3C035260.2 Cucumis melo HOM05D002864 ORTHO05D008485 1.1e-20 102.8 70 78.6
MELO3C035317.2 Cucumis melo HOM05D002864 ORTHO05D008485 4.5e-17 90.9 68 72.1
MELO3C005021.2 Cucumis melo HOM05D002864 ORTHO05D008485 1.0e-16 89.7 68 72.1
CAN.G1439.10 Capsicum annuum HOM05D002864 ORTHO05D008485 1.2e-12 76.3 75 60.0
ClCG09G013010 Citrullus lanatus HOM05D002864 ORTHO05D007972 1.5e-12 75.9 68 63.2
LjContig00315g0018050 Lotus japonicus HOM05D002864 ORTHO05D008485 4.4e-12 74.3 68 60.3
LjContig00439g0002067 Lotus japonicus HOM05D002864 ORTHO05D008485 4.4e-12 74.3 68 60.3
LjContig00446g0004288 Lotus japonicus HOM05D002864 ORTHO05D008485 4.4e-12 74.3 68 60.3
Ah.10g028190 Amaranthus hybridus HOM05D002864 ORTHO05D007972 5.7e-12 73.9 71 59.2
Ah.10g028740 Amaranthus hybridus HOM05D002864 ORTHO05D007972 5.7e-12 73.9 71 59.2
AUR62042335 Chenopodium quinoa HOM05D002864 ORTHO05D008485 5.7e-12 73.9 71 59.2
Sed0011141 Sechium edule HOM05D002864 ORTHO05D008485 5.7e-12 73.9 68 60.3
Sed0025017 Sechium edule HOM05D002864 ORTHO05D008485 5.7e-12 73.9 68 60.3
TAR371G0939 Trochodendron aralioides HOM05D002864 ORTHO05D008485 1.7e-11 72.4 71 57.7
CANSAT16G0032 Cannabis sativa HOM05D002864 ORTHO05D008485 2.8e-11 71.6 68 58.8
Cfa021370 Carpinus fangiana HOM05D002864 ORTHO05D008485 2.8e-11 71.6 68 58.8
Lalb_Chr00c21g0405111 Lupinus albus HOM05D002864 ORTHO05D008485 2.8e-11 71.6 68 58.8
Lalb_Chr00c21g0405201 Lupinus albus HOM05D002864 ORTHO05D008485 2.8e-11 71.6 68 58.8
Lalb_Chr00c21g0405251 Lupinus albus HOM05D002864 ORTHO05D008485 2.8e-11 71.6 68 58.8
Lalb_Chr00c21g0405391 Lupinus albus HOM05D002864 ORTHO05D008485 2.8e-11 71.6 68 58.8
Lalb_Chr00c24g0407171 Lupinus albus HOM05D002864 ORTHO05D008485 2.8e-11 71.6 68 58.8
Nn1g09937 Nelumbo nucifera HOM05D002864 ORTHO05D008485 2.8e-11 71.6 68 58.8
Nn1g10176 Nelumbo nucifera HOM05D002864 ORTHO05D008485 2.8e-11 71.6 68 58.8
Psat0ss7220g0040 Pisum sativum HOM05D002864 ORTHO05D008485 2.8e-11 71.6 68 58.8
Lalb_Chr11g0070141 Lupinus albus HOM05D002864 ORTHO05D008485 3.7e-11 71.2 68 58.8
Lalb_Chr11g0070221 Lupinus albus HOM05D002864 ORTHO05D008485 3.7e-11 71.2 68 58.8
Thhalv10001274m.g Eutrema salsugineum HOM05D002864 ORTHO05D008485 4.8e-11 70.9 68 58.8
Lj2A1230T121 Lonicera japonica HOM05D002864 ORTHO05D008485 4.8e-11 70.9 68 58.8
CARHR288210 Cardamine hirsuta HOM05D002864 ORTHO05D008485 6.3e-11 70.5 68 57.4
Gohir.A06G146200 Gossypium hirsutum HOM05D002864 ORTHO05D008485 6.3e-11 70.5 66 59.1
SalBow1G5070 Salvia bowleyana HOM05D002864 ORTHO05D008485 6.3e-11 70.5 68 58.8
SHI26647 Sapria himalayana HOM05D002864 ORTHO05D008485 6.3e-11 70.5 68 57.4
SGA_v2.0_scaffold420G51305 Striga asiatica HOM05D002864 ORTHO05D008485 6.3e-11 70.5 68 58.8
Peaxi162Scf36888g00001 Petunia axillaris HOM05D002864 ORTHO05D008485 8.3e-11 70.1 68 58.8
CSS0047546 Camellia sinensis var. sinensis HOM05D002864 ORTHO05D008485 1.1e-10 69.7 71 56.3
CAN.G366.9 Capsicum annuum HOM05D002864 ORTHO05D008485 1.1e-10 69.7 68 58.8
CAN.G537.1 Capsicum annuum HOM05D002864 ORTHO05D008485 1.1e-10 69.7 68 58.8
CAN.G539.3 Capsicum annuum HOM05D002864 ORTHO05D008485 1.1e-10 69.7 68 58.8
CAN.G761.1 Capsicum annuum HOM05D002864 ORTHO05D008485 1.1e-10 69.7 68 58.8
CAN.G826.1 Capsicum annuum HOM05D002864 ORTHO05D008485 1.1e-10 69.7 69 58.0
Solyc00g500260.1 Solanum lycopersicum HOM05D002864 ORTHO05D007972 1.1e-10 69.7 68 58.8
Solyc00g500312.1 Solanum lycopersicum HOM05D002864 ORTHO05D007972 1.1e-10 69.7 68 58.8
Solyc00g500362.1 Solanum lycopersicum HOM05D002864 ORTHO05D008485 1.1e-10 69.7 68 58.8
Atru.chr6.1811 Acer truncatum HOM05D002864 ORTHO05D008485 2.4e-10 68.6 60 61.7
CAN.G1001.40 Capsicum annuum HOM05D002864 ORTHO05D008485 2.4e-10 68.6 60 63.3
unitig_87.g28031 Utricularia gibba HOM05D002864 ORTHO05D008485 2.4e-10 68.6 68 57.4
Actinidia34819 Actinidia chinensis HOM05D002864 ORTHO05D008485 3.1e-10 68.2 60 61.7
A04p09410 Brassica napus HOM05D002864 ORTHO05D008485 3.1e-10 68.2 66 59.1
BolSC28t60317H Brassica oleracea HOM05D002864 ORTHO05D008485 3.1e-10 68.2 66 59.1
BolSC28t60372H Brassica oleracea HOM05D002864 ORTHO05D008485 3.1e-10 68.2 66 59.1
BraSC159t45731Z Brassica rapa HOM05D002864 ORTHO05D008485 3.1e-10 68.2 66 59.1
BraSC48t46332Z Brassica rapa HOM05D002864 ORTHO05D008485 3.1e-10 68.2 66 59.1
BraSC54t46369Z Brassica rapa HOM05D002864 ORTHO05D008485 3.1e-10 68.2 66 59.1
Ca_08792_v3 Cicer arietinum L. HOM05D000255 ORTHO05D028863 3.1e-10 68.2 60 61.7
Ca_22173_v3 Cicer arietinum L. HOM05D005210 ORTHO05D010080 3.1e-10 68.2 60 61.7
Lsat_1_v5_gn_4_66001 Lactuca sativa HOM05D002864 ORTHO05D008485 3.1e-10 68.2 68 57.4
Lsat_1_v5_gn_7_96661 Lactuca sativa HOM05D002864 ORTHO05D008485 3.1e-10 68.2 68 57.4
AT2G07725 Arabidopsis thaliana HOM05D002864 ORTHO05D008485 4.1e-10 67.8 66 57.6
ATMG00210 Arabidopsis thaliana HOM05D002864 ORTHO05D008485 4.1e-10 67.8 66 57.6
CARHR282720 Cardamine hirsuta HOM05D002864 ORTHO05D008485 4.1e-10 67.8 66 57.6
arahy.Tifrunner.gnm1.ann1.ID22MY Arachis hypogaea HOM05D002864 ORTHO05D008485 5.3e-10 67.4 68 55.9
arahy.Tifrunner.gnm1.ann1.IM9F8N Arachis hypogaea HOM05D002864 ORTHO05D008485 5.3e-10 67.4 68 55.9
Rhsim07G0136600 Rhododendron simsii HOM05D002864 ORTHO05D008485 5.3e-10 67.4 65 58.5
ATR0091G001 Amborella trichopoda HOM05D002864 ORTHO05D008485 9.1e-10 66.6 60 58.3
Aqoxy12s038 Aquilegia oxysepala HOM05D002864 ORTHO05D008485 9.1e-10 66.6 71 53.5
RhsimMtG0002800 Rhododendron simsii HOM05D002864 ORTHO05D008485 1.6e-09 65.9 66 57.6
PGR028G0017 Punica granatum HOM05D002864 ORTHO05D008485 2.0e-09 65.5 66 57.6
HanXRQChr01g0001471 Helianthus annuus HOM05D002864 ORTHO05D008485 2.7e-09 65.1 68 54.4
HanXRQChr04g0101201 Helianthus annuus HOM05D002864 ORTHO05D008485 2.7e-09 65.1 68 54.4
HanXRQMTg0579191 Helianthus annuus HOM05D002864 ORTHO05D008485 2.7e-09 65.1 68 54.4
PGSC0003DMG400033612 Solanum tuberosum HOM05D002864 ORTHO05D008485 4.5e-09 64.3 60 60.0
BraSC48t46241Z Brassica rapa HOM05D002864 ORTHO05D008485 5.9e-09 63.9 64 56.2
ATR0015G001 Amborella trichopoda HOM05D002864 ORTHO05D008485 1.0e-08 63.2 52 61.5
DCAR_032433 Daucus carota HOM05D002864 ORTHO05D008485 1.0e-08 63.2 66 56.1
ATR0709G086 Amborella trichopoda HOM05D002864 ORTHO05D008485 1.7e-08 62.4 66 54.5
ATR0573G002 Amborella trichopoda HOM05D007099 ORTHO05D009081 2.2e-08 62.0 60 55.0
Nitab4.5_0004300g0150 Nicotiana tabacum HOM05D002864 ORTHO05D008485 1.1e-07 59.7 47 66.0
RcHm_v2.0_Chr5g0061711 Rosa chinensis HOM05D002864 ORTHO05D008485 1.9e-07 58.9 57 56.1
SHI40661 Sapria himalayana HOM05D002864 ORTHO05D008485 1.9e-07 58.9 68 52.9
Zm00001eb299530 Zea mays HOM05D002864 ORTHO05D008485 1.9e-07 58.9 68 48.5
ATR0104G021 Amborella trichopoda HOM05D002864 ORTHO05D008485 3.2e-07 58.2 60 53.3
FvH4_3g34030 Fragaria vesca HOM05D002864 ORTHO05D008485 1.6e-06 55.8 57 54.4
FAN11G1817 Fragaria x ananassa HOM05D002864 ORTHO05D008485 1.6e-06 55.8 57 54.4
Lalb_Chr07g0190471 Lupinus albus HOM05D002864 ORTHO05D008485 2.1e-06 55.5 47 59.6
HanXRQChr13g0393901 Helianthus annuus HOM05D002864 ORTHO05D008485 2.7e-06 55.1 62 51.6
CAN.G502.17 Capsicum annuum HOM05D002864 ORTHO05D008485 3.6e-06 54.7 47 59.6
SEGI_29573 Sequoiadendron giganteum HOM05D002864 ORTHO05D008485 3.6e-06 54.7 62 53.2
FAN16G0826 Fragaria x ananassa HOM05D002864 ORTHO05D008485 4.7e-06 54.3 57 52.6
FAN21G0602 Fragaria x ananassa HOM05D002864 ORTHO05D008485 4.7e-06 54.3 57 52.6
Gohir.D12G077000 Gossypium hirsutum HOM05D002864 ORTHO05D008485 8.0e-06 53.5 51 54.9
Nitab4.5_0000120g0100 Nicotiana tabacum HOM05D002864 ORTHO05D008485 8.0e-06 53.5 53 54.7


User provided reference genes

Program Settings