Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C012874.2 Cucumis melo HOM05D004257 ORTHO05D005202 6.7e-196 687.2 353 100.0
CsaV3_3G022160 Cucumis sativus L. HOM05D004257 ORTHO05D005202 1.7e-186 656.0 353 96.6
ClCG07G001120 Citrullus lanatus HOM05D004257 ORTHO05D005202 5.9e-184 647.5 355 94.4
Sed0014699 Sechium edule HOM05D004257 ORTHO05D005202 1.3e-175 619.8 353 90.4
Sed0007154 Sechium edule HOM05D004257 ORTHO05D005202 2.6e-171 605.5 353 89.2
RcHm_v2.0_Chr6g0287891 Rosa chinensis HOM05D004257 ORTHO05D005202 4.5e-160 568.2 355 83.4
FAN20G1479 Fragaria x ananassa HOM05D004257 ORTHO05D005202 1.9e-158 562.8 354 82.5
Manes.12G033300 Manihot esculenta HOM05D004257 ORTHO05D005202 1.9e-158 562.8 353 83.0
Sabra02G0030200 Salix brachista HOM05D004257 ORTHO05D005202 3.3e-158 562.0 353 81.6
FvH4_2g21300 Fragaria vesca HOM05D004257 ORTHO05D005202 4.3e-158 561.6 353 81.9
Potri.002G037400 Populus trichocarpa HOM05D004257 ORTHO05D005202 7.3e-158 560.8 353 81.6
Duzib138G0002 Durio zibethinus HOM05D004257 ORTHO05D005202 1.2e-157 560.1 353 82.4
FAN27G2888 Fragaria x ananassa HOM05D004257 ORTHO05D005202 1.2e-157 560.1 354 81.9
Thecc.01G256600 Theobroma cacao HOM05D004257 ORTHO05D005202 2.1e-157 559.3 353 82.2
CSS0006901 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 2.8e-157 558.9 353 81.9
CSS0016221 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 2.8e-157 558.9 353 81.9
Duzib133G1463 Durio zibethinus HOM05D004257 ORTHO05D005202 2.8e-157 558.9 353 82.2
CANSAT01G0143 Cannabis sativa HOM05D004257 ORTHO05D005202 3.6e-157 558.5 353 81.0
FAN24G1061 Fragaria x ananassa HOM05D004257 ORTHO05D005202 4.7e-157 558.1 354 82.2
TWI18G0956 Tripterygium wilfordii HOM05D004257 ORTHO05D005202 6.1e-157 557.8 332 84.3
QL09p039362 Quercus lobata HOM05D004257 ORTHO05D005202 1.0e-156 557.0 352 82.1
COL.COLO4_04031 Corchorus olitorius HOM05D004257 ORTHO05D005202 1.4e-156 556.6 353 81.6
Potri.005G225700 Populus trichocarpa HOM05D004257 ORTHO05D005202 3.0e-156 555.4 353 81.0
Cfa002439 Carpinus fangiana HOM05D004257 ORTHO05D005202 6.8e-156 554.3 353 80.7
MBI07_g16916_MAGBIO Magnolia biondii HOM05D004257 ORTHO05D005202 1.5e-155 553.1 364 79.1
Gorai.001G178500 Gossypium raimondii HOM05D004257 ORTHO05D005202 2.0e-155 552.7 353 81.0
FAN15G2746 Fragaria x ananassa HOM05D004257 ORTHO05D005202 4.4e-155 551.6 353 81.3
Gohir.D07G155600 Gossypium hirsutum HOM05D004257 ORTHO05D005202 5.7e-155 551.2 353 80.7
CANSAT35G1745 Cannabis sativa HOM05D004257 ORTHO05D005202 1.3e-154 550.1 355 80.0
TAR365G0817 Trochodendron aralioides HOM05D004257 ORTHO05D005202 1.3e-154 550.1 353 80.5
Hma1.2p1_0075F.1_g039210 Hydrangea macrophylla HOM05D004257 ORTHO05D005202 2.2e-154 549.3 353 79.6
Gohir.A07G149400 Gossypium hirsutum HOM05D004257 ORTHO05D005202 2.9e-154 548.9 353 80.2
Dinv06012 Davidia involucrata HOM05D004257 ORTHO05D005202 6.4e-154 547.7 353 80.2
CiPaw.04G187400 Carya illinoinensis HOM05D004257 ORTHO05D005202 1.1e-153 547.0 354 79.4
CiPaw.03G265600 Carya illinoinensis HOM05D004257 ORTHO05D005202 1.8e-153 546.2 353 81.0
Ciclev10021043m.g Citrus clementina HOM05D004257 ORTHO05D005202 1.8e-153 546.2 353 79.0
Gorai.007G147100 Gossypium raimondii HOM05D004257 ORTHO05D005202 2.4e-153 545.8 354 80.2
Cc04_g09710 Coffea canephora HOM05D004257 ORTHO05D005202 3.2e-153 545.4 347 80.4
Nn3g19680 Nelumbo nucifera HOM05D004257 ORTHO05D005202 9.2e-153 543.9 353 79.3
DCAR_010071 Daucus carota HOM05D004257 ORTHO05D005202 2.0e-152 542.7 336 81.2
Nitab4.5_0004454g0010 Nicotiana tabacum HOM05D004257 ORTHO05D005202 2.7e-152 542.3 353 78.5
Glyma.19G165400 Glycine max HOM05D004257 ORTHO05D005202 4.6e-152 541.6 353 79.3
Gohir.A11G131450 Gossypium hirsutum HOM05D004257 ORTHO05D005202 5.9e-152 541.2 354 79.7
Gohir.D11G137300 Gossypium hirsutum HOM05D004257 ORTHO05D005202 5.9e-152 541.2 354 79.4
TWI12G0832 Tripterygium wilfordii HOM05D004257 ORTHO05D005202 5.9e-152 541.2 353 78.8
Aqoxy2G03662 Aquilegia oxysepala HOM05D004257 ORTHO05D005202 7.8e-152 540.8 325 81.8
Eucgr.K03257 Eucalyptus grandis HOM05D004257 ORTHO05D005202 1.7e-151 539.7 356 78.9
Hund06906 Selenicereus undatus HOM05D004257 ORTHO05D005202 1.7e-151 539.7 353 79.3
CAN.G637.23 Capsicum annuum HOM05D004257 ORTHO05D005202 2.3e-151 539.3 327 82.6
Peaxi162Scf00171g00722 Petunia axillaris HOM05D004257 ORTHO05D005202 2.3e-151 539.3 326 83.1
Actinidia38939 Actinidia chinensis HOM05D004257 ORTHO05D005202 3.0e-151 538.9 353 80.2
Prupe.8G222200 Prunus persica HOM05D004257 ORTHO05D005202 3.0e-151 538.9 359 79.4
PGSC0003DMG402031052 Solanum tuberosum HOM05D004257 ORTHO05D005202 3.0e-151 538.9 326 82.8
VMungo1383G3387 Vigna mungo HOM05D004257 ORTHO05D005202 3.9e-151 538.5 354 79.4
Lj5A229T68 Lonicera japonica HOM05D004257 ORTHO05D005202 5.0e-151 538.1 354 79.7
Haze_24645 Corylus avellana HOM05D004257 ORTHO05D005202 6.6e-151 537.7 381 74.5
Medtr7g097060 Medicago truncatula HOM05D004257 ORTHO05D005202 6.6e-151 537.7 353 79.3
PSO832G0932 Papaver somniferum HOM05D004257 ORTHO05D005202 8.6e-151 537.3 353 77.3
TAR362G0002 Trochodendron aralioides HOM05D004257 ORTHO05D005202 1.5e-150 536.6 353 78.2
THA.LOC104825258 Tarenaya hassleriana HOM05D004257 ORTHO05D005202 1.9e-150 536.2 325 82.8
MD05G1195500 Malus domestica HOM05D004257 ORTHO05D005202 3.3e-150 535.4 363 78.8
MD10G1182800 Malus domestica HOM05D004257 ORTHO05D005202 3.3e-150 535.4 364 78.6
Aqoxy5G00217 Aquilegia oxysepala HOM05D004257 ORTHO05D005202 4.3e-150 535.0 323 84.5
Migut.O00233 Erythranthe guttata HOM05D004257 ORTHO05D005202 4.3e-150 535.0 327 81.3
Psat3g056800 Pisum sativum HOM05D004257 ORTHO05D005202 4.3e-150 535.0 353 79.0
Ca_08681_v3 Cicer arietinum L. HOM05D004257 ORTHO05D005202 5.6e-150 534.6 353 78.8
Solyc03g098140.3 Solanum lycopersicum HOM05D004257 ORTHO05D005202 5.6e-150 534.6 353 77.6
PGR044G0150 Punica granatum HOM05D004257 ORTHO05D005202 7.3e-150 534.3 356 78.7
Sopen03g028840 Solanum pennellii HOM05D004257 ORTHO05D005202 9.5e-150 533.9 353 77.6
Atru.chr5.1712 Acer truncatum HOM05D004257 ORTHO05D005202 1.2e-149 533.5 323 81.7
Sc09g0004250 Simmondsia chinensis HOM05D004257 ORTHO05D005202 1.2e-149 533.5 353 78.2
AUR62004833 Chenopodium quinoa HOM05D004257 ORTHO05D005202 1.6e-149 533.1 351 78.3
Phvul.001G161500 Phaseolus vulgaris HOM05D004257 ORTHO05D005202 1.6e-149 533.1 344 80.5
PSO210G0560 Papaver somniferum HOM05D004257 ORTHO05D005202 2.1e-149 532.7 353 76.8
AUR62040921 Chenopodium quinoa HOM05D004257 ORTHO05D005202 2.8e-149 532.3 351 78.3
Lalb_Chr01g0019631 Lupinus albus HOM05D004257 ORTHO05D005202 2.8e-149 532.3 354 78.8
Ah.04g163130 Amaranthus hybridus HOM05D004257 ORTHO05D005202 3.6e-149 531.9 353 78.5
vmacro10363 Vaccinium macrocarpon HOM05D004257 ORTHO05D005202 4.7e-149 531.6 360 78.1
SGA_v2.0_scaffold90G27780 Striga asiatica HOM05D004257 ORTHO05D005202 1.0e-148 530.4 353 77.3
DCAR_014267 Daucus carota HOM05D004257 ORTHO05D005202 4.0e-148 528.5 353 77.1
arahy.Tifrunner.gnm1.ann1.63G7RJ Arachis hypogaea HOM05D004257 ORTHO05D005202 8.9e-148 527.3 323 82.4
Thhalv10010498m.g Eutrema salsugineum HOM05D004257 ORTHO05D005202 8.9e-148 527.3 323 81.4
AL5G35770 Arabidopsis lyrata HOM05D004257 ORTHO05D005202 2.6e-147 525.8 354 77.4
MSTRG.23192 Avicennia marina HOM05D004257 ORTHO05D005202 2.6e-147 525.8 336 79.2
AT3G54690 Arabidopsis thaliana HOM05D004257 ORTHO05D005202 5.8e-147 524.6 354 77.4
BcaC02g09050 Brassica carinata HOM05D004257 ORTHO05D005202 7.5e-147 524.2 327 79.8
C04p37820 Brassica napus HOM05D004257 ORTHO05D005202 7.5e-147 524.2 327 79.8
BolC4t25358H Brassica oleracea HOM05D004257 ORTHO05D005202 7.5e-147 524.2 327 79.8
Nitab4.5_0000936g0060 Nicotiana tabacum HOM05D004257 ORTHO05D005202 7.5e-147 524.2 326 80.7
PSO675G6112 Papaver somniferum HOM05D004257 ORTHO05D005202 1.7e-146 523.1 353 75.1
A04p05160 Brassica napus HOM05D004257 ORTHO05D005202 2.9e-146 522.3 323 80.8
BraA04t16226Z Brassica rapa HOM05D004257 ORTHO05D005202 2.9e-146 522.3 323 80.8
PSO675G8755 Papaver somniferum HOM05D004257 ORTHO05D005202 3.7e-146 521.9 353 74.8
Cpa.g.sc473.3 Carica papaya HOM05D004257 ORTHO05D005202 4.9e-146 521.5 339 78.8
PSO675G8702 Papaver somniferum HOM05D004257 ORTHO05D005202 8.3e-146 520.8 353 74.8
Lj1g0005279 Lotus japonicus HOM05D004257 ORTHO05D005202 1.4e-145 520.0 354 75.1
Carub.0005s2129 Capsella rubella HOM05D004257 ORTHO05D005202 2.4e-145 519.2 355 75.5
BcaB02g07726 Brassica carinata HOM05D004257 ORTHO05D005202 3.2e-145 518.8 353 76.2
BcaC08g44693 Brassica carinata HOM05D004257 ORTHO05D005202 4.1e-145 518.5 353 75.9
C06p22290 Brassica napus HOM05D004257 ORTHO05D005202 4.1e-145 518.5 353 75.9
Aa31sc35G30 Aethionema arabicum HOM05D004257 ORTHO05D005202 5.4e-145 518.1 323 80.2
Sp5g07760 Schrenkiella parvula HOM05D004257 ORTHO05D005202 5.4e-145 518.1 323 80.5
CARHR164610 Cardamine hirsuta HOM05D004257 ORTHO05D005202 7.0e-145 517.7 354 76.0
BolC6t37415H Brassica oleracea HOM05D004257 ORTHO05D005202 2.7e-144 515.8 353 75.6
Lsat_1_v5_gn_3_39581 Lactuca sativa HOM05D004257 ORTHO05D005202 1.0e-143 513.8 337 79.8
arahy.Tifrunner.gnm1.ann1.BG7UA0 Arachis hypogaea HOM05D004257 ORTHO05D005202 1.3e-143 513.5 344 77.0
HanXRQChr17g0542071 Helianthus annuus HOM05D004257 ORTHO05D005202 2.3e-143 512.7 353 77.9
CSS0001153 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 5.6e-142 508.1 356 77.0
MSTRG.11529 Avicennia marina HOM05D004257 ORTHO05D005202 3.6e-141 505.4 330 76.7
TPR.G7131 Trifolium pratense HOM05D004257 ORTHO05D005202 6.8e-140 501.1 394 69.8
CSS0049630 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 1.7e-138 496.5 356 76.4
ATR0736G010 Amborella trichopoda HOM05D004257 ORTHO05D005202 7.3e-134 481.1 336 71.7
BraA07t29902Z Brassica rapa HOM05D004257 ORTHO05D005202 3.4e-131 472.2 353 71.7
HPP92_010358 Vanilla planifolia HOM05D004257 ORTHO05D005202 4.4e-131 471.9 324 72.5
GSVIVG01028350001 Vitis vinifera HOM05D004257 ORTHO05D005202 1.3e-130 470.3 353 71.1
BcaC05g28242 Brassica carinata HOM05D004257 ORTHO05D005202 1.7e-130 469.9 323 74.9
BolC5t33007H Brassica oleracea HOM05D004257 ORTHO05D005202 1.7e-130 469.9 323 74.9
HPP92_017366 Vanilla planifolia HOM05D004257 ORTHO05D005202 6.4e-130 468.0 316 74.1
CDE04G1210 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 1.6e-128 463.4 287 79.1
CSS0045427 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 3.5e-128 462.2 356 73.3
Os02g0158300 Oryza sativa ssp. japonica HOM05D004257 ORTHO05D005202 1.3e-127 460.3 357 66.4
Oeu023635.1 Olea europaea HOM05D004257 ORTHO05D005202 3.9e-127 458.8 332 71.1
Zm00001eb207770 Zea mays HOM05D004257 ORTHO05D005202 6.6e-127 458.0 357 65.5
Zm00001eb232580 Zea mays HOM05D004257 ORTHO05D005202 4.3e-126 455.3 357 65.0
AagrBONN_evm.TU.Sc2ySwM_344.1200 Anthoceros agrestis HOM05D004257 ORTHO05D005202 7.3e-126 454.5 315 71.4
CDE02G1046 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 1.1e-124 450.7 329 71.1
AagrBONN_evm.TU.Sc2ySwM_344.3818 Anthoceros agrestis HOM05D004257 ORTHO05D005202 5.2e-124 448.4 315 70.5
SalBow5G3197 Salvia bowleyana HOM05D004257 ORTHO05D005202 2.6e-123 446.0 301 76.4
SalBow5G4297 Salvia bowleyana HOM05D004257 ORTHO05D005202 2.6e-123 446.0 301 76.4
Mapoly0023s0132 Marchantia polymorpha HOM05D004257 ORTHO05D005202 4.4e-123 445.3 331 66.2
unitig_0.g1405 Utricularia gibba HOM05D004257 ORTHO05D005202 7.6e-123 444.5 324 71.3
SMO367G0216 Selaginella moellendorffii HOM05D004257 ORTHO05D005202 4.6e-120 435.3 315 68.3
unitig_61.g26464 Utricularia gibba HOM05D004257 ORTHO05D005202 1.0e-119 434.1 328 68.9
EL10Ac4g09002 Beta vulgaris HOM05D004257 ORTHO05D005202 4.9e-114 415.2 272 77.9
Pp3c23_13620 Physcomitrium patens HOM05D004257 ORTHO05D005202 8.7e-111 404.4 356 58.7
ECA246G4101 Erigeron canadensis HOM05D004257 ORTHO05D005202 9.6e-110 401.0 231 85.7
Pp3c5_14840 Physcomitrium patens HOM05D004257 ORTHO05D005202 4.8e-109 398.7 318 63.2
CBR_g20340 Chara braunii HOM05D004257 ORTHO05D005202 8.1e-109 397.9 339 58.7
CDE02G2420 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 1.0e-98 364.4 228 78.5
C05p42800 Brassica napus HOM05D004257 ORTHO05D005202 1.3e-98 364.0 231 77.9
BcaB02g08451 Brassica carinata HOM05D004257 ORTHO05D005202 2.3e-95 353.2 199 86.9
Pp3c24_11040 Physcomitrium patens HOM05D004257 ORTHO05D005202 1.7e-82 310.5 298 55.7
PSO470G0001 Papaver somniferum HOM05D004257 ORTHO05D005202 3.0e-79 299.7 220 70.9
CAN.G65.83 Capsicum annuum HOM05D004257 ORTHO05D005202 1.1e-76 291.2 248 62.9
SGA_v2.0_scaffold25G10776 Striga asiatica HOM05D004257 ORTHO05D005202 2.2e-69 266.9 185 75.7
SEGI_22917 Sequoiadendron giganteum HOM05D004257 ORTHO05D005202 5.9e-67 258.8 237 57.0
SEGI_29481 Sequoiadendron giganteum HOM05D004257 ORTHO05D005202 5.9e-67 258.8 237 57.0
AagrBONN_evm.TU.Sc2ySwM_228.5393 Anthoceros agrestis HOM05D004257 ORTHO05D005202 8.2e-61 238.4 165 69.7
A07p22230 Brassica napus HOM05D004257 ORTHO05D005202 1.1e-57 228.0 131 85.5
Actinidia34751 Actinidia chinensis HOM05D000378 ORTHO05D005202 1.5e-54 217.6 137 78.8
Oeu036414.1 Olea europaea HOM05D004257 ORTHO05D005202 6.3e-53 212.2 123 84.6
SEGI_04972 Sequoiadendron giganteum HOM05D004257 ORTHO05D005202 1.1e-49 201.4 122 76.2
BcaC07g39794 Brassica carinata HOM05D004257 ORTHO05D005202 1.5e-46 191.0 164 63.4
BolC8t50595H Brassica oleracea HOM05D004257 ORTHO05D005202 2.8e-45 186.8 164 62.8
C08p29840 Brassica napus HOM05D004257 ORTHO05D005202 3.5e-43 179.9 164 61.0
AagrBONN_evm.TU.Sc2ySwM_228.5394 Anthoceros agrestis HOM05D004257 ORTHO05D005202 1.4e-36 157.9 137 59.9
Peaxi162Scf00643g00656 Petunia axillaris HOM05D004257 ORTHO05D005202 2.2e-29 134.0 118 64.4
Aqoxy1G04111 Aquilegia oxysepala HOM05D004257 ORTHO05D004515 2.0e-27 127.5 164 44.5
Lsat_1_v5_gn_8_28701 Lactuca sativa HOM05D004257 ORTHO05D005202 3.5e-27 126.7 92 75.0
Rhsim05G0133300 Rhododendron simsii HOM05D004257 ORTHO05D005202 2.8e-24 117.1 92 68.5
EL10Ac4g09003 Beta vulgaris HOM05D004257 ORTHO05D005202 3.6e-24 116.7 70 81.4
Lj6g0021985 Lotus japonicus HOM05D004257 ORTHO05D236371 4.1e-20 103.2 78 64.1
Rhsim08G0010200 Rhododendron simsii HOM05D000535 ORTHO05D000427 3.0e-18 97.1 71 67.6
Pp3c2_23370 Physcomitrium patens HOM05D004257 ORTHO05D005202 2.8e-16 90.5 112 44.6
BcaB01g01067 Brassica carinata HOM05D004257 ORTHO05D092693 4.7e-16 89.7 78 59.0
Rhsim04G0042100 Rhododendron simsii HOM05D004257 ORTHO05D005202 1.1e-12 78.6 127 41.7
RhsimUnG0176200 Rhododendron simsii HOM05D000026 ORTHO05D000127 7.3e-09 65.9 51 68.6
Lsat_1_v5_gn_6_26721 Lactuca sativa HOM05D004257 ORTHO05D230427 4.7e-08 63.2 42 81.0
CDE04G3164 Ceratophyllum demersum HOM05D004257 ORTHO05D130150 1.8e-07 61.2 36 72.2


User provided reference genes

Program Settings