Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C012492.2 Cucumis melo HOM05D003977 ORTHO05D004536 0.0e+00 2015.4 1025 100.0
CsaV3_5G036930 Cucumis sativus L. HOM05D003977 ORTHO05D004536 0.0e+00 1986.5 1025 98.2
ClCG05G026990 Citrullus lanatus HOM05D003977 ORTHO05D004536 0.0e+00 1909.4 1025 94.5
Sed0027944 Sechium edule HOM05D003977 ORTHO05D004536 0.0e+00 1824.3 1025 91.0
Sed0009106 Sechium edule HOM05D003977 ORTHO05D004536 0.0e+00 1729.1 1004 88.5
Cfa010949 Carpinus fangiana HOM05D003977 ORTHO05D004536 0.0e+00 1593.9 1027 78.0
Haze_02995 Corylus avellana HOM05D003977 ORTHO05D004536 0.0e+00 1590.9 1026 78.2
Dinv06987 Davidia involucrata HOM05D003977 ORTHO05D004536 0.0e+00 1570.1 1024 77.1
CiPaw.06G056400 Carya illinoinensis HOM05D003977 ORTHO05D004536 0.0e+00 1567.7 1032 76.6
QL93p0049_0031 Quercus lobata HOM05D003977 ORTHO05D004536 0.0e+00 1565.4 1034 76.7
Ciclev10000128m.g Citrus clementina HOM05D003977 ORTHO05D004536 0.0e+00 1563.1 1022 76.7
RcHm_v2.0_Chr1g0326641 Rosa chinensis HOM05D003977 ORTHO05D004536 0.0e+00 1561.6 1025 77.0
Atru.chr12.1306 Acer truncatum HOM05D003977 ORTHO05D004536 0.0e+00 1560.8 1025 76.8
Dinv14623 Davidia involucrata HOM05D003977 ORTHO05D004536 0.0e+00 1559.3 1012 77.6
QL04p021130 Quercus lobata HOM05D003977 ORTHO05D004536 0.0e+00 1558.9 1034 76.5
TAR622G1067 Trochodendron aralioides HOM05D003977 ORTHO05D004536 0.0e+00 1558.1 1023 77.1
MD07G1045800 Malus domestica HOM05D003977 ORTHO05D004536 0.0e+00 1541.9 1028 75.9
CiPaw.14G009300 Carya illinoinensis HOM05D003977 ORTHO05D004536 0.0e+00 1540.4 1022 76.7
Prupe.2G042800 Prunus persica HOM05D003977 ORTHO05D004536 0.0e+00 1535.8 1026 76.3
FvH4_7g03720 Fragaria vesca HOM05D003977 ORTHO05D004536 0.0e+00 1533.1 1020 75.6
Nn4g22094 Nelumbo nucifera HOM05D003977 ORTHO05D004536 0.0e+00 1526.5 1022 75.5
Glyma.15G230300 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1520.0 1001 76.7
FAN06G3123 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1519.6 998 76.8
GSVIVG01035560001 Vitis vinifera HOM05D003977 ORTHO05D004536 0.0e+00 1515.7 1004 76.1
Duzib106G1228 Durio zibethinus HOM05D003977 ORTHO05D004536 0.0e+00 1515.4 1028 75.4
Glyma.13G192400 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1513.4 1022 75.4
TWI38G1846 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 0.0e+00 1513.4 1025 74.9
FAN01G0005 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1505.3 1005 75.5
FAN03G2084 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1499.2 998 75.9
Ca_23978_v3 Cicer arietinum L. HOM05D003977 ORTHO05D004536 0.0e+00 1495.7 1007 75.2
Medtr8g040560 Medicago truncatula HOM05D003977 ORTHO05D004536 0.0e+00 1495.3 1033 73.7
TWI15G1223 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 0.0e+00 1491.9 1026 73.5
Lj1g0022785 Lotus japonicus HOM05D003977 ORTHO05D004536 0.0e+00 1491.5 1007 75.2
Psat4g145000 Pisum sativum HOM05D003977 ORTHO05D004536 0.0e+00 1489.6 1027 73.7
TPR.G8543 Trifolium pratense HOM05D003977 ORTHO05D004536 0.0e+00 1489.6 1012 74.7
Potri.001G031400 Populus trichocarpa HOM05D003977 ORTHO05D004536 0.0e+00 1489.2 1035 73.7
Glyma.04G192200 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1485.3 1023 74.6
Thecc.10G142800 Theobroma cacao HOM05D003977 ORTHO05D004536 0.0e+00 1483.8 1022 74.4
Duzib114G0684 Durio zibethinus HOM05D003977 ORTHO05D004536 0.0e+00 1479.5 1020 74.8
Gorai.012G019200 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1479.5 1023 74.6
Rhsim12G0015900 Rhododendron simsii HOM05D003977 ORTHO05D004536 0.0e+00 1478.8 1019 73.9
VMungo1127G0455 Vigna mungo HOM05D003977 ORTHO05D004536 0.0e+00 1478.8 1023 73.7
Gohir.D04G016500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1476.8 1023 74.5
Lalb_Chr03g0032201 Lupinus albus HOM05D003977 ORTHO05D004536 0.0e+00 1473.4 1021 73.6
Gohir.D04G016400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1473.0 1028 73.5
Phvul.011G201200 Phaseolus vulgaris HOM05D003977 ORTHO05D004536 0.0e+00 1473.0 1023 73.4
Sabra01G0022500 Salix brachista HOM05D003977 ORTHO05D004536 0.0e+00 1472.2 1077 70.8
arahy.Tifrunner.gnm1.ann1.I0XR4S Arachis hypogaea HOM05D003977 ORTHO05D004536 0.0e+00 1471.8 1027 73.3
FAN10G3794 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1470.7 1022 73.0
COL.COLO4_20737 Corchorus olitorius HOM05D003977 ORTHO05D004536 0.0e+00 1469.9 1030 73.1
THA.LOC104799327 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 0.0e+00 1468.4 1031 73.0
Gohir.A05G399500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1467.6 1030 73.2
arahy.Tifrunner.gnm1.ann1.Q9GEU7 Arachis hypogaea HOM05D003977 ORTHO05D004536 0.0e+00 1466.4 1018 73.8
MD02G1277700 Malus domestica HOM05D003977 ORTHO05D004536 0.0e+00 1466.4 978 76.0
Gorai.012G019100 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1466.1 1035 73.1
Lj3g0027102 Lotus japonicus HOM05D003977 ORTHO05D004536 0.0e+00 1466.1 1040 73.3
vmacro01007 Vaccinium macrocarpon HOM05D003977 ORTHO05D004536 0.0e+00 1465.7 1042 72.6
Nn3g16238 Nelumbo nucifera HOM05D003977 ORTHO05D004536 0.0e+00 1462.2 1028 73.4
Prupe.8G086800 Prunus persica HOM05D003977 ORTHO05D004536 0.0e+00 1460.7 1024 73.8
CANSAT56G0684 Cannabis sativa HOM05D003977 ORTHO05D004536 0.0e+00 1456.8 1034 73.0
Lalb_Chr19g0132941 Lupinus albus HOM05D003977 ORTHO05D004536 0.0e+00 1456.4 1004 73.2
CSS0046878 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 0.0e+00 1453.3 1018 73.0
Aa31LG7G12510 Aethionema arabicum HOM05D003977 ORTHO05D004536 0.0e+00 1444.5 999 74.3
Cc11_g14880 Coffea canephora HOM05D003977 ORTHO05D004536 0.0e+00 1439.9 1040 71.7
PGR031G0564 Punica granatum HOM05D003977 ORTHO05D004536 0.0e+00 1432.5 1022 71.1
PGSC0003DMG400011581 Solanum tuberosum HOM05D003977 ORTHO05D004536 0.0e+00 1427.9 1011 72.6
DCAR_004259 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1426.0 1037 70.8
DCAR_004260 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1426.0 1037 70.8
THA.LOC104826752 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 0.0e+00 1425.6 1039 71.3
Solyc09g091280.4 Solanum lycopersicum HOM05D003977 ORTHO05D004536 0.0e+00 1424.5 1024 72.4
Sopen09g034250 Solanum pennellii HOM05D003977 ORTHO05D004536 0.0e+00 1422.5 1024 72.3
Carub.0003s1164 Capsella rubella HOM05D003977 ORTHO05D004536 0.0e+00 1416.4 1035 71.9
Sp3g10500 Schrenkiella parvula HOM05D003977 ORTHO05D004536 0.0e+00 1416.4 1024 71.9
Peaxi162Scf00047g01540 Petunia axillaris HOM05D003977 ORTHO05D004536 0.0e+00 1407.9 1002 72.5
AT3G12280 Arabidopsis thaliana HOM05D003977 ORTHO05D004536 0.0e+00 1406.7 1029 72.0
AL3G23940 Arabidopsis lyrata HOM05D003977 ORTHO05D004536 0.0e+00 1402.9 1028 71.7
MBI11_g07996_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 0.0e+00 1402.1 1054 70.8
Aqoxy5G03020 Aquilegia oxysepala HOM05D003977 ORTHO05D004536 0.0e+00 1401.3 1011 71.2
TAR629G1670 Trochodendron aralioides HOM05D003977 ORTHO05D004536 0.0e+00 1398.3 925 76.0
A05p37080 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1397.9 1028 71.7
MSTRG.444 Avicennia marina HOM05D003977 ORTHO05D004536 0.0e+00 1397.5 1013 70.9
CAN.G1588.14 Capsicum annuum HOM05D003977 ORTHO05D004536 0.0e+00 1396.3 1008 71.6
Migut.K01127 Erythranthe guttata HOM05D003977 ORTHO05D004536 0.0e+00 1395.9 1011 71.1
EL10Ac1g02273 Beta vulgaris HOM05D003977 ORTHO05D004536 0.0e+00 1392.1 1062 68.4
CARHR086830 Cardamine hirsuta HOM05D003977 ORTHO05D004536 0.0e+00 1389.4 1032 70.6
BolC5t34217H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1388.6 1027 71.2
Eucgr.G03211 Eucalyptus grandis HOM05D003977 ORTHO05D004536 0.0e+00 1388.2 1026 69.0
C05p55510 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1387.9 1028 71.4
Thhalv10019977m.g Eutrema salsugineum HOM05D003977 ORTHO05D004536 0.0e+00 1385.2 1024 70.5
PSO017G2490 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1384.8 1034 69.8
PSO478G2410 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1383.6 1034 69.6
HanXRQChr06g0175421 Helianthus annuus HOM05D003977 ORTHO05D004536 0.0e+00 1381.7 1013 69.7
Sc02g0008490 Simmondsia chinensis HOM05D003977 ORTHO05D004536 0.0e+00 1377.8 1004 70.5
BcaC09g48227 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1376.3 1009 71.1
BolC1t05248H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1372.8 1034 70.0
C01p53050 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1372.1 1034 70.0
ECA246G4717 Erigeron canadensis HOM05D003977 ORTHO05D004536 0.0e+00 1370.1 996 70.0
Manes.03G097800 Manihot esculenta HOM05D003977 ORTHO05D004536 0.0e+00 1362.1 888 77.3
Gohir.A05G399400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1359.4 914 76.9
DCAR_008196 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1357.8 1010 69.1
Manes.16G045800 Manihot esculenta HOM05D003977 ORTHO05D004536 0.0e+00 1352.0 889 77.5
Gorai.009G299000 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1349.3 1032 67.9
AUR62035738 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1347.0 1028 67.5
AUR62033843 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1346.6 1030 67.6
BcaB04g18687 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1332.0 1008 69.3
BolC3t16833H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1327.0 1030 68.7
SalBow2G0230 Salvia bowleyana HOM05D003977 ORTHO05D004536 0.0e+00 1326.6 1032 67.4
Gohir.D05G284400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1325.5 987 69.5
C03p45560 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1325.1 1035 68.3
Lsat_1_v5_gn_3_33021 Lactuca sativa HOM05D003977 ORTHO05D004536 0.0e+00 1318.9 984 68.8
AUR62041503 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1317.0 1027 66.4
A03p37570 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1314.7 1005 69.4
Gohir.A05G283400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1306.2 1004 67.8
BraA03t12911Z Brassica rapa HOM05D003977 ORTHO05D004536 0.0e+00 1298.9 1048 66.7
Hund13302 Selenicereus undatus HOM05D003977 ORTHO05D004536 0.0e+00 1298.9 1032 65.3
SGA_v2.0_scaffold81G25979 Striga asiatica HOM05D003977 ORTHO05D004536 0.0e+00 1298.9 1038 66.3
ATR0582G127 Amborella trichopoda HOM05D003977 ORTHO05D004536 0.0e+00 1289.2 1018 65.9
HPP92_000321 Vanilla planifolia HOM05D003977 ORTHO05D004536 0.0e+00 1244.2 1029 64.0
Ah.05g166690 Amaranthus hybridus HOM05D003977 ORTHO05D004536 0.0e+00 1219.1 930 67.8
CDE09G1395 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 0.0e+00 1203.3 1026 63.6
Os08g0538700 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 0.0e+00 1198.7 1024 63.1
Nitab4.5_0002182g0050 Nicotiana tabacum HOM05D003977 ORTHO05D004536 0.0e+00 1172.1 1026 63.3
PSO478G5179 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1168.3 988 63.0
Nitab4.5_0008702g0020 Nicotiana tabacum HOM05D003977 ORTHO05D004536 0.0e+00 1167.5 1040 62.4
SEGI_35648 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 0.0e+00 1161.4 1009 61.3
BcaC01g04055 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1157.5 850 70.2
Zm00001eb037120 Zea mays HOM05D003977 ORTHO05D004536 0.0e+00 1141.7 1036 60.9
unitig_26.g10435 Utricularia gibba HOM05D003977 ORTHO05D004536 0.0e+00 1135.6 1058 58.7
Cpa.g.sc169.40 Carica papaya HOM05D003977 ORTHO05D004536 0.0e+00 1089.3 992 59.6
CSS0026343 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 4.5e-301 1038.1 1044 58.0
SEGI_33786 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 1.0e-300 1036.9 871 62.0
CDE02G2393 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 8.2e-287 990.7 800 67.0
Zm00001eb198220 Zea mays HOM05D003977 ORTHO05D004536 1.7e-276 956.4 855 61.9
Lj3A1077G55 Lonicera japonica HOM05D003977 ORTHO05D004536 2.7e-269 932.6 718 68.9
MBI11_g02479_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 2.6e-264 916.0 755 66.9
Os11g0533500 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 2.4e-262 909.4 1004 51.8
Mapoly0131s0020 Marchantia polymorpha HOM05D003977 ORTHO05D004536 4.7e-258 895.2 1028 50.0
Pp3c15_2800 Physcomitrium patens HOM05D003977 ORTHO05D004536 4.1e-254 882.1 999 49.8
Pp3c9_2440 Physcomitrium patens HOM05D003977 ORTHO05D004536 1.2e-248 864.0 978 49.7
AagrBONN_evm.TU.Sc2ySwM_362.2961 Anthoceros agrestis HOM05D003977 ORTHO05D004536 3.0e-244 849.4 989 48.4
Zm00001eb197990 Zea mays HOM05D003977 ORTHO05D004536 3.8e-231 805.8 825 52.7
Zm00001eb113470 Zea mays HOM05D003977 ORTHO05D004536 1.3e-223 780.8 817 53.2
SMO134G0004 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 2.5e-206 723.4 910 46.6
Ciclev10003102m.g Citrus clementina HOM05D003977 ORTHO05D004536 1.8e-204 717.2 722 58.9
unitig_22.g6370 Utricularia gibba HOM05D003977 ORTHO05D004536 8.7e-196 688.3 666 56.9
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 3.3e-187 659.8 836 50.6
GSVIVG01032958001 Vitis vinifera HOM05D003977 ORTHO05D004536 4.5e-176 622.9 630 55.7
SMO141G0281 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 7.0e-169 599.0 957 39.7
Ciclev10014630m.g Citrus clementina HOM05D003977 ORTHO05D004536 8.3e-162 575.5 626 52.4
Manes.11G074000 Manihot esculenta HOM05D003977 ORTHO05D004536 1.8e-156 557.8 667 50.1
Pp3c19_9580 Physcomitrium patens HOM05D003977 ORTHO05D004536 6.8e-148 529.3 588 51.9
CBR_g45825 Chara braunii HOM05D003977 ORTHO05D004536 1.5e-142 511.5 1113 33.5
BraA05t22505Z Brassica rapa HOM05D003977 ORTHO05D004536 3.9e-135 486.9 402 64.2
Hma1.2p1_0073F.1_g038600 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 4.0e-124 450.3 276 81.9
Atru.chr6.2718 Acer truncatum HOM05D003977 ORTHO05D004536 1.3e-122 445.3 638 44.2
QL04p021333 Quercus lobata HOM05D003977 ORTHO05D004536 1.2e-120 438.7 544 47.4
Hma1.2p1_0164F.1_g073080 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 2.6e-107 394.4 236 82.6
unitig_22.g6371 Utricularia gibba HOM05D003977 ORTHO05D004536 4.5e-91 340.5 270 67.8
SEGI_04896 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 1.2e-88 332.4 310 57.7
HanXRQChr04g0106401 Helianthus annuus HOM05D003977 ORTHO05D004536 1.0e-71 276.2 253 58.5
PRCOL_00001859 Prasinoderma coloniale HOM05D003977 ORTHO05D004536 3.3e-70 271.2 1042 27.8
CDE02G2628 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 1.5e-54 219.2 215 52.6
MCO08G295 Micromonas commoda HOM05D003977 ORTHO05D004536 7.5e-54 216.9 702 27.4
Cre06.g255450 Chlamydomonas reinhardtii HOM05D003977 ORTHO05D004536 1.1e-49 203.0 922 24.0
Pp3c19_9550 Physcomitrium patens HOM05D003977 ORTHO05D004536 1.4e-47 196.1 152 58.6
Pp3c19_9596 Physcomitrium patens HOM05D003977 ORTHO05D004536 2.3e-47 195.3 213 46.9
C02p49640 Brassica napus HOM05D003977 ORTHO05D004536 2.6e-46 191.8 173 59.5
BolC2t11042H Brassica oleracea HOM05D003977 ORTHO05D004536 3.1e-44 184.9 154 63.6
Hma1.2p1_0468F.1_g158780 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 1.3e-37 162.9 151 55.6
Oeu034276.1 Olea europaea HOM05D003977 ORTHO05D004536 9.2e-36 156.8 177 52.5
SalBow1G6973 Salvia bowleyana HOM05D003977 ORTHO05D004536 2.6e-30 138.7 128 54.7
Hma1.2p1_0112F.1_g054450 Hydrangea macrophylla HOM05D000462 ORTHO05D004536 3.1e-23 115.2 88 61.4
Hma1.2p1_1036F.1_g250510 Hydrangea macrophylla HOM05D000462 ORTHO05D004536 3.1e-23 115.2 88 61.4
SalBow2G2207 Salvia bowleyana HOM05D003977 ORTHO05D004536 5.2e-23 114.4 112 50.9
Medtr3g006170 Medicago truncatula HOM05D003977 ORTHO05D004536 3.1e-15 88.6 66 66.7
Rhsim02G0185900 Rhododendron simsii HOM05D016728 ORTHO05D340288 5.2e-15 87.8 85 61.2
Hma1.2p1_0417F.1_g148820 Hydrangea macrophylla HOM05D000825 ORTHO05D003684 6.4e-13 80.9 60 70.0
Actinidia33992 Actinidia chinensis HOM05D003977 ORTHO05D004536 5.2e-07 61.2 46 71.7
Actinidia09594 Actinidia chinensis HOM05D003977 ORTHO05D004536 6.8e-07 60.8 47 68.1


User provided reference genes

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