Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C011980.2 Cucumis melo HOM05D004907 ORTHO05D005707 2.9e-221 771.5 378 100.0
CsaV3_5G031400 Cucumis sativus L. HOM05D004907 ORTHO05D005707 3.2e-196 688.3 373 91.2
ClCG05G025500 Citrullus lanatus HOM05D004907 ORTHO05D005707 2.2e-168 595.9 372 78.8
CiPaw.06G069900 Carya illinoinensis HOM05D004907 ORTHO05D005707 2.1e-99 366.7 364 50.5
Prupe.1G249900 Prunus persica HOM05D004907 ORTHO05D005707 3.7e-99 365.9 367 49.0
Manes.13G027600 Manihot esculenta HOM05D004907 ORTHO05D005707 8.2e-99 364.8 376 48.9
Haze_12215 Corylus avellana HOM05D004907 ORTHO05D005707 3.1e-98 362.8 365 49.6
Cfa009181 Carpinus fangiana HOM05D004907 ORTHO05D005707 5.3e-98 362.1 366 49.2
QL03p059196 Quercus lobata HOM05D004907 ORTHO05D005707 9.0e-98 361.3 375 49.3
Cfa009182 Carpinus fangiana HOM05D004907 ORTHO05D005707 5.0e-96 355.5 368 49.2
RcHm_v2.0_Chr4g0441991 Rosa chinensis HOM05D004907 ORTHO05D005707 6.1e-94 348.6 360 47.2
Gohir.D02G160600 Gossypium hirsutum HOM05D004907 ORTHO05D005707 3.0e-93 346.3 368 47.8
Duzib268G1138 Durio zibethinus HOM05D004907 ORTHO05D005707 3.3e-92 342.8 376 47.3
FAN12G3344 Fragaria x ananassa HOM05D004907 ORTHO05D005707 3.3e-92 342.8 372 46.2
FvH4_4g32970 Fragaria vesca HOM05D004907 ORTHO05D005707 9.7e-92 341.3 372 46.0
CSS0001528 Camellia sinensis var. sinensis HOM05D004907 ORTHO05D005707 4.8e-91 339.0 360 46.1
Hma1.2p1_0160F.1_g071120 Hydrangea macrophylla HOM05D004907 ORTHO05D005707 1.8e-90 337.0 367 44.7
CiPaw.05G186900 Carya illinoinensis HOM05D004907 ORTHO05D005707 2.4e-90 336.7 366 47.3
FAN22G1867 Fragaria x ananassa HOM05D004907 ORTHO05D005707 2.4e-90 336.7 363 47.1
Sopen05g001160 Solanum pennellii HOM05D004907 ORTHO05D005707 6.9e-90 335.1 366 45.6
PGSC0003DMG400013488 Solanum tuberosum HOM05D004907 ORTHO05D005707 6.9e-90 335.1 368 44.8
FAN17G0584 Fragaria x ananassa HOM05D004907 ORTHO05D005707 2.0e-89 333.6 366 46.7
Lj6P808T27 Lonicera japonica HOM05D004907 ORTHO05D005707 3.4e-89 332.8 377 43.8
FAN07G1203 Fragaria x ananassa HOM05D004907 ORTHO05D005707 4.5e-89 332.4 358 45.5
Nitab4.5_0015209g0010 Nicotiana tabacum HOM05D004907 ORTHO05D005707 4.5e-89 332.4 372 44.6
Thecc.02G254700 Theobroma cacao HOM05D004907 ORTHO05D005707 1.3e-88 330.9 374 46.0
MD13G1095300 Malus domestica HOM05D004907 ORTHO05D005707 2.2e-88 330.1 360 45.3
Gohir.A03G137500 Gossypium hirsutum HOM05D004907 ORTHO05D005707 5.0e-88 328.9 368 45.7
Nitab4.5_0000338g0040 Nicotiana tabacum HOM05D004907 ORTHO05D005707 6.5e-88 328.6 372 43.5
CAN.G728.4 Capsicum annuum HOM05D004907 ORTHO05D005707 8.5e-88 328.2 368 44.0
Solyc05g005150.1 Solanum lycopersicum HOM05D004907 ORTHO05D005707 8.5e-88 328.2 366 44.5
Atru.chr11.2072 Acer truncatum HOM05D004907 ORTHO05D005707 1.4e-87 327.4 344 47.7
DCAR_007072 Daucus carota HOM05D004907 ORTHO05D005707 1.4e-87 327.4 364 44.5
CANSAT01G1025 Cannabis sativa HOM05D004907 ORTHO05D005707 2.5e-87 326.6 358 46.4
Gohir.D01G149900 Gossypium hirsutum HOM05D004907 ORTHO05D005707 3.2e-87 326.2 365 44.9
Gorai.002G186000 Gossypium raimondii HOM05D004907 ORTHO05D005707 1.6e-86 323.9 365 44.7
Ciclev10031561m.g Citrus clementina HOM05D004907 ORTHO05D005707 2.7e-86 323.2 397 44.3
Hma1.2p1_0223F.1_g094330 Hydrangea macrophylla HOM05D004907 ORTHO05D005707 3.6e-86 322.8 371 45.8
Gorai.005G180700 Gossypium raimondii HOM05D004907 ORTHO05D005707 7.9e-86 321.6 368 45.1
Duzib268G1696 Durio zibethinus HOM05D004907 ORTHO05D005707 1.0e-85 321.2 376 44.1
MD16G1096500 Malus domestica HOM05D004907 ORTHO05D005707 1.4e-85 320.9 353 46.5
Eucgr.H02548 Eucalyptus grandis HOM05D004907 ORTHO05D005707 2.3e-85 320.1 364 44.2
Eucgr.H02549 Eucalyptus grandis HOM05D004907 ORTHO05D005707 2.3e-85 320.1 373 42.4
MD16G1096400 Malus domestica HOM05D004907 ORTHO05D005707 3.9e-85 319.3 360 45.3
Gohir.A05G313700 Gossypium hirsutum HOM05D004907 ORTHO05D005707 2.6e-84 316.6 373 43.4
Lsat_1_v5_gn_3_28580 Lactuca sativa HOM05D004907 ORTHO05D005707 1.1e-82 311.2 375 42.4
TAR374G1110 Trochodendron aralioides HOM05D004907 ORTHO05D005707 1.8e-82 310.5 372 40.9
VMungo1215G1811 Vigna mungo HOM05D004907 ORTHO05D005707 5.3e-82 308.9 371 42.9
Sc04g0009300 Simmondsia chinensis HOM05D004907 ORTHO05D005707 9.1e-82 308.1 378 42.1
PGR119G0630 Punica granatum HOM05D004907 ORTHO05D005707 2.0e-81 307.0 365 41.4
Gorai.009G337200 Gossypium raimondii HOM05D004907 ORTHO05D005707 2.6e-81 306.6 373 42.6
AUR62014077 Chenopodium quinoa HOM05D004907 ORTHO05D005707 3.4e-81 306.2 369 40.4
Lj2g0022644 Lotus japonicus HOM05D004907 ORTHO05D005707 3.4e-81 306.2 360 43.3
Glyma.08G284600 Glycine max HOM05D004907 ORTHO05D005707 1.0e-80 304.7 377 42.4
HanXRQChr06g0173591 Helianthus annuus HOM05D004907 ORTHO05D005707 1.3e-80 304.3 379 44.1
Lj4g0000696 Lotus japonicus HOM05D004907 ORTHO05D005707 2.2e-80 303.5 370 42.7
Potri.010G042900 Populus trichocarpa HOM05D004907 ORTHO05D005707 1.4e-79 300.8 393 44.3
Haze_12216 Corylus avellana HOM05D004907 ORTHO05D005707 1.9e-79 300.4 369 45.8
AUR62005416 Chenopodium quinoa HOM05D004907 ORTHO05D005707 2.5e-79 300.1 366 40.2
Ca_03137_v3 Cicer arietinum L. HOM05D004907 ORTHO05D005707 2.5e-79 300.1 367 42.0
Actinidia27794 Actinidia chinensis HOM05D004907 ORTHO05D005707 3.2e-79 299.7 357 43.4
Cc11_g15390 Coffea canephora HOM05D004907 ORTHO05D005707 3.2e-79 299.7 365 41.4
Rhsim12G0113900 Rhododendron simsii HOM05D004907 ORTHO05D005707 4.2e-79 299.3 364 45.6
Glyma.01G028800 Glycine max HOM05D004907 ORTHO05D005707 5.5e-79 298.9 369 42.0
Nn4g22709 Nelumbo nucifera HOM05D004907 ORTHO05D005707 5.5e-79 298.9 372 42.5
Psat5g210760 Pisum sativum HOM05D004907 ORTHO05D005707 7.2e-79 298.5 368 42.4
Lalb_Chr05g0216711 Lupinus albus HOM05D004907 ORTHO05D005707 1.2e-78 297.7 354 42.4
Glyma.02G036400 Glycine max HOM05D004907 ORTHO05D005707 2.1e-78 297.0 379 41.4
Gohir.A01G160100 Gossypium hirsutum HOM05D004907 ORTHO05D005707 1.0e-77 294.7 312 46.2
PGR102G3060 Punica granatum HOM05D004907 ORTHO05D005707 1.4e-77 294.3 372 41.4
Rhsim12G0042700 Rhododendron simsii HOM05D004907 ORTHO05D005707 1.4e-77 294.3 376 42.0
Oeu001729.1 Olea europaea HOM05D004907 ORTHO05D005707 1.8e-77 293.9 366 41.3
TPR.G24774 Trifolium pratense HOM05D004907 ORTHO05D005707 1.8e-77 293.9 357 43.7
Sabra10G0024600 Salix brachista HOM05D004907 ORTHO05D005707 2.3e-77 293.5 386 43.3
Glyma.18G141000 Glycine max HOM05D004907 ORTHO05D005707 3.0e-77 293.1 371 42.6
Phvul.003G062300 Phaseolus vulgaris HOM05D004907 ORTHO05D005707 6.7e-77 292.0 372 40.9
PSO063G4965 Papaver somniferum HOM05D004907 ORTHO05D005707 5.7e-76 288.9 371 39.9
Lsat_1_v5_gn_8_154601 Lactuca sativa HOM05D004907 ORTHO05D005707 1.3e-75 287.7 368 39.9
MSTRG.7910 Avicennia marina HOM05D004907 ORTHO05D005707 2.8e-75 286.6 371 41.8
PSO782G1891 Papaver somniferum HOM05D004907 ORTHO05D005707 2.8e-75 286.6 384 39.6
Migut.L01466 Erythranthe guttata HOM05D004907 ORTHO05D005707 6.3e-75 285.4 377 41.6
Aqoxy3G02876 Aquilegia oxysepala HOM05D004907 ORTHO05D005707 2.4e-74 283.5 365 38.9
Medtr8g069800 Medicago truncatula HOM05D004907 ORTHO05D005707 2.4e-74 283.5 369 41.2
Psat2g106360 Pisum sativum HOM05D004907 ORTHO05D005707 1.2e-73 281.2 363 41.6
Medtr5g043750 Medicago truncatula HOM05D004907 ORTHO05D005707 4.5e-73 279.3 374 40.1
PSO170G6868 Papaver somniferum HOM05D004907 ORTHO05D005707 7.7e-73 278.5 365 40.0
PSO441G0001 Papaver somniferum HOM05D004907 ORTHO05D005707 7.7e-73 278.5 365 40.0
TWI36G0219 Tripterygium wilfordii HOM05D004907 ORTHO05D005707 2.2e-72 276.9 380 41.8
Medtr5g033880 Medicago truncatula HOM05D004907 ORTHO05D005707 1.5e-71 274.2 369 39.8
SalBow2G1155 Salvia bowleyana HOM05D004907 ORTHO05D005707 4.2e-71 272.7 366 42.6
PSO170G1656 Papaver somniferum HOM05D004907 ORTHO05D005707 1.2e-70 271.2 368 38.3
MSTRG.2405 Avicennia marina HOM05D004907 ORTHO05D005707 8.0e-70 268.5 368 41.0
Sed0025966 Sechium edule HOM05D002061 ORTHO05D005707 8.0e-70 268.5 360 40.3
ClCG08G017860 Citrullus lanatus HOM05D002061 ORTHO05D005707 8.8e-69 265.0 412 39.6
PSO144G0054 Papaver somniferum HOM05D004907 ORTHO05D005707 7.5e-68 261.9 379 37.2
Sed0027759 Sechium edule HOM05D004907 ORTHO05D005707 7.5e-68 261.9 361 39.9
GSVIVG01013786001 Vitis vinifera HOM05D004907 ORTHO05D005707 6.3e-67 258.8 265 44.5
Oeu056415.1 Olea europaea HOM05D004907 ORTHO05D005707 1.8e-66 257.3 366 36.6
Hund25371 Selenicereus undatus HOM05D004907 ORTHO05D005707 2.4e-66 256.9 367 38.1
Dinv15270 Davidia involucrata HOM05D004907 ORTHO05D005707 4.1e-66 256.1 258 46.9
Aa31LG7G7420 Aethionema arabicum HOM05D004907 ORTHO05D005707 1.6e-65 254.2 367 39.8
Thhalv10007835m.g Eutrema salsugineum HOM05D004907 ORTHO05D005707 1.3e-64 251.1 377 35.5
Oeu056417.1 Olea europaea HOM05D004907 ORTHO05D005707 1.3e-64 251.1 373 37.0
Thecc.02G254800 Theobroma cacao HOM05D004907 ORTHO05D005707 1.3e-64 251.1 379 38.3
BcaB07g32334 Brassica carinata HOM05D004907 ORTHO05D005707 2.5e-63 246.9 370 37.6
THA.LOC104822976 Tarenaya hassleriana HOM05D004907 ORTHO05D005707 2.5e-63 246.9 378 38.4
Ah.03g132850 Amaranthus hybridus HOM05D000168 ORTHO05D000811 2.7e-62 243.4 286 42.7
SalBow3G2985 Salvia bowleyana HOM05D004907 ORTHO05D005707 2.7e-62 243.4 363 38.0
BraA09t39619Z Brassica rapa HOM05D004907 ORTHO05D005707 4.7e-62 242.7 373 36.5
A09p41240 Brassica napus HOM05D004907 ORTHO05D005707 8.0e-62 241.9 377 36.3
C05p22690 Brassica napus HOM05D004907 ORTHO05D005707 1.8e-61 240.7 373 35.9
Oeu055460.1 Olea europaea HOM05D004907 ORTHO05D005707 1.8e-61 240.7 366 37.7
Sp1g20830 Schrenkiella parvula HOM05D004907 ORTHO05D005707 1.8e-61 240.7 373 37.3
BolC5t30967H Brassica oleracea HOM05D004907 ORTHO05D005707 2.3e-61 240.4 373 35.9
AT1G23390 Arabidopsis thaliana HOM05D004907 ORTHO05D005707 5.2e-61 239.2 368 36.1
BcaC05g26256 Brassica carinata HOM05D004907 ORTHO05D005707 1.2e-60 238.0 364 36.5
AL1G37180 Arabidopsis lyrata HOM05D004907 ORTHO05D005707 3.4e-60 236.5 371 37.2
Carub.0001s2297 Capsella rubella HOM05D004907 ORTHO05D005707 5.7e-60 235.7 370 37.3
Phvul.002G064500 Phaseolus vulgaris HOM05D004907 ORTHO05D005707 1.7e-59 234.2 246 46.7
CDE06G1150 Ceratophyllum demersum HOM05D004907 ORTHO05D005707 3.7e-59 233.0 315 38.4
COL.COLO4_24215 Corchorus olitorius HOM05D004907 ORTHO05D005707 1.4e-58 231.1 265 41.9
Peaxi162Scf00158g00003 Petunia axillaris HOM05D004907 ORTHO05D005707 5.4e-58 229.2 267 40.8
CARHR023830 Cardamine hirsuta HOM05D004907 ORTHO05D005707 3.5e-57 226.5 377 35.8
SGA_v2.0_scaffold63G21708 Striga asiatica HOM05D004907 ORTHO05D005707 8.6e-56 221.9 359 38.2
Gohir.D05G315200 Gossypium hirsutum HOM05D004907 ORTHO05D005707 1.1e-55 221.5 236 47.5
Lalb_Chr09g0326261 Lupinus albus HOM05D004907 ORTHO05D005707 3.6e-54 216.5 356 34.0
ATR1091G111 Amborella trichopoda HOM05D004907 ORTHO05D005707 3.1e-50 203.4 370 35.1
Oeu056728.1 Olea europaea HOM05D004907 ORTHO05D005707 1.7e-48 197.6 273 38.5
Actinidia08149 Actinidia chinensis HOM05D004907 ORTHO05D005707 1.4e-45 188.0 257 37.7
PSO478G2945 Papaver somniferum HOM05D004907 ORTHO05D005707 8.3e-43 178.7 179 46.9
EL10Ac6g13709 Beta vulgaris HOM05D004907 ORTHO05D005707 2.4e-42 177.2 213 39.4
PSO357G0455 Papaver somniferum HOM05D004907 ORTHO05D005707 8.0e-38 162.2 214 42.1
MD13G1280300 Malus domestica HOM05D004907 ORTHO05D005707 3.2e-34 150.2 183 39.3
Nn3g16812 Nelumbo nucifera HOM05D004907 ORTHO05D005707 2.5e-31 140.6 190 38.9
COL.COLO4_24217 Corchorus olitorius HOM05D004907 ORTHO05D005707 2.9e-27 127.1 207 31.9
Zm00001eb155550 Zea mays HOM05D004907 ORTHO05D005707 5.1e-24 116.3 398 26.6
Cfa009183 Carpinus fangiana HOM05D004907 ORTHO05D005707 6.6e-24 115.9 127 48.0
TPR.G21504 Trifolium pratense HOM05D004907 ORTHO05D005707 8.1e-22 109.0 156 35.9
Actinidia23732 Actinidia chinensis HOM05D007853 ORTHO05D009873 1.1e-21 108.6 361 26.3
HPP92_008048 Vanilla planifolia HOM05D004907 ORTHO05D005707 3.1e-21 107.1 350 28.3
vmacro14766 Vaccinium macrocarpon HOM05D007853 ORTHO05D009873 5.2e-21 106.3 349 25.8
Actinidia09494 Actinidia chinensis HOM05D007853 ORTHO05D009873 2.0e-20 104.4 353 27.5
Os09g0292900 Oryza sativa ssp. japonica HOM05D004907 ORTHO05D005707 3.4e-20 103.6 258 28.7
MBI10_g16828_MAGBIO Magnolia biondii HOM05D007853 ORTHO05D009873 2.4e-18 97.4 352 27.0
Hma1.2p1_1061F.1_g253350 Hydrangea macrophylla HOM05D007853 ORTHO05D009873 5.4e-18 96.3 361 27.4
Cfa002555 Carpinus fangiana HOM05D007853 ORTHO05D009873 2.1e-17 94.4 349 26.9
Os02g0465600 Oryza sativa ssp. japonica HOM05D004907 ORTHO05D005707 6.0e-17 92.8 346 25.4
AL3G40490 Arabidopsis lyrata HOM05D007853 ORTHO05D009873 7.8e-17 92.4 348 26.4
AT3G24760 Arabidopsis thaliana HOM05D007853 ORTHO05D009873 6.6e-16 89.4 340 27.1
Dinv04666 Davidia involucrata HOM05D007853 ORTHO05D009873 8.7e-16 89.0 344 26.2
unitig_8.g2923 Utricularia gibba HOM05D004907 ORTHO05D005707 8.7e-16 89.0 97 43.3
Sp3g22500 Schrenkiella parvula HOM05D007853 ORTHO05D009873 3.3e-15 87.0 347 28.0
TAR636G2687 Trochodendron aralioides HOM05D007853 ORTHO05D009873 4.3e-15 86.7 350 26.3
Thhalv10002571m.g Eutrema salsugineum HOM05D007853 ORTHO05D009873 1.6e-14 84.7 341 27.3
Medtr0197s0070 Medicago truncatula HOM05D007853 ORTHO05D009873 1.6e-14 84.7 343 26.8
Medtr7g059040 Medicago truncatula HOM05D007853 ORTHO05D009873 1.6e-14 84.7 343 26.8
TPR.G15291 Trifolium pratense HOM05D007853 ORTHO05D009873 2.8e-14 84.0 340 26.2
ATR0787G102 Amborella trichopoda HOM05D007853 ORTHO05D009873 3.6e-14 83.6 345 25.5
Manes.12G041900 Manihot esculenta HOM05D007853 ORTHO05D009873 8.1e-14 82.4 353 26.6
Mapoly0119s0021 Marchantia polymorpha HOM05D007853 ORTHO05D009873 2.4e-13 80.9 286 25.5
Ciclev10020523m.g Citrus clementina HOM05D007853 ORTHO05D009873 3.1e-13 80.5 358 26.5
Psat3g143800 Pisum sativum HOM05D007853 ORTHO05D009873 6.9e-13 79.3 347 26.8
Nn2g13937 Nelumbo nucifera HOM05D004907 ORTHO05D005707 1.2e-12 78.6 74 52.7
Lj1g0009384 Lotus japonicus HOM05D007853 ORTHO05D009873 1.5e-12 78.2 358 25.7
SEGI_02257 Sequoiadendron giganteum HOM05D007853 ORTHO05D009873 5.8e-12 76.3 351 25.6
Glyma.18G173200 Glycine max HOM05D007853 ORTHO05D009873 1.7e-11 74.7 348 23.6
Pp3c10_6380 Physcomitrium patens HOM05D007853 ORTHO05D009873 2.2e-11 74.3 275 25.8
Pp3c2_14180 Physcomitrium patens HOM05D007853 ORTHO05D009873 4.9e-11 73.2 328 23.8
Carub.0003s2515 Capsella rubella HOM05D007853 ORTHO05D009873 6.4e-11 72.8 349 24.6
unitig_8.g2924 Utricularia gibba HOM05D004907 ORTHO05D005707 8.4e-11 72.4 114 36.8
TPR.G18320 Trifolium pratense HOM05D004907 ORTHO05D005707 1.4e-10 71.6 103 37.9
Ca_07539_v3 Cicer arietinum L. HOM05D007853 ORTHO05D009873 1.9e-10 71.2 355 26.2
Mapoly0098s0011 Marchantia polymorpha HOM05D007853 ORTHO05D009873 1.3e-08 65.1 303 25.4
Nn2g13938 Nelumbo nucifera HOM05D004907 ORTHO05D005707 1.7e-08 64.7 90 35.6
Pp3c19_15800 Physcomitrium patens HOM05D007753 ORTHO05D009385 3.9e-08 63.5 348 19.3
unitig_8.g2925 Utricularia gibba HOM05D004907 ORTHO05D005707 1.9e-07 61.2 86 37.2
Haze_24777 Corylus avellana HOM05D007853 ORTHO05D009873 4.3e-07 60.1 196 25.0
Medtr5g033860 Medicago truncatula HOM05D004907 ORTHO05D005707 9.6e-07 58.9 89 37.1
ATR0561G071 Amborella trichopoda HOM05D005977 ORTHO05D004563 1.6e-06 58.2 316 24.1


User provided reference genes

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