Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C011876.2 Cucumis melo HOM05D004097 ORTHO05D005352 0.0e+00 1758.0 854 100.0
CsaV3_5G030370 Cucumis sativus L. HOM05D004097 ORTHO05D005352 0.0e+00 1672.5 854 95.0
ClCG11G013780 Citrullus lanatus HOM05D004097 ORTHO05D005352 0.0e+00 1624.0 856 91.0
Sed0007371 Sechium edule HOM05D004097 ORTHO05D005352 0.0e+00 1539.6 855 87.6
QL03p053766 Quercus lobata HOM05D004097 ORTHO05D005352 0.0e+00 1308.9 854 71.9
Cfa009333 Carpinus fangiana HOM05D004097 ORTHO05D005352 0.0e+00 1265.0 856 70.4
CiPaw.05G112000 Carya illinoinensis HOM05D004097 ORTHO05D005352 0.0e+00 1265.0 853 70.6
CSS0033535 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 0.0e+00 1256.1 853 70.2
CSS0021321 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 0.0e+00 1254.6 853 70.1
Prupe.1G228800 Prunus persica HOM05D004097 ORTHO05D005352 0.0e+00 1254.6 852 70.2
GSVIVG01010441001 Vitis vinifera HOM05D004097 ORTHO05D005352 0.0e+00 1253.0 853 70.5
MD13G1116700 Malus domestica HOM05D004097 ORTHO05D005352 0.0e+00 1248.8 854 70.0
RcHm_v2.0_Chr4g0430631 Rosa chinensis HOM05D004097 ORTHO05D005352 0.0e+00 1245.0 853 69.1
Ciclev10030695m.g Citrus clementina HOM05D004097 ORTHO05D005352 0.0e+00 1243.0 856 69.4
CANSAT01G0794 Cannabis sativa HOM05D004097 ORTHO05D005352 0.0e+00 1241.1 854 68.7
Manes.13G018100 Manihot esculenta HOM05D004097 ORTHO05D005352 0.0e+00 1241.1 852 68.8
COL.COLO4_20377 Corchorus olitorius HOM05D004097 ORTHO05D005352 0.0e+00 1233.0 855 68.3
PGR102G2071 Punica granatum HOM05D004097 ORTHO05D005352 0.0e+00 1233.0 855 67.5
Thecc.02G212500 Theobroma cacao HOM05D004097 ORTHO05D005352 0.0e+00 1231.1 854 68.7
FvH4_4g23960 Fragaria vesca HOM05D004097 ORTHO05D005352 0.0e+00 1224.2 853 68.5
Duzib251G0245 Durio zibethinus HOM05D004097 ORTHO05D005352 0.0e+00 1223.4 854 68.4
Gorai.002G191800 Gossypium raimondii HOM05D004097 ORTHO05D005352 0.0e+00 1216.8 854 68.0
Potri.010G059000 Populus trichocarpa HOM05D004097 ORTHO05D005352 0.0e+00 1216.4 851 67.9
Eucgr.B03480 Eucalyptus grandis HOM05D004097 ORTHO05D005352 0.0e+00 1215.7 856 67.6
FAN07G0057 Fragaria x ananassa HOM05D004097 ORTHO05D005352 0.0e+00 1215.3 863 67.1
TWI36G0618 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 0.0e+00 1214.5 851 67.9
Gohir.D01G154900 Gossypium hirsutum HOM05D004097 ORTHO05D005352 0.0e+00 1212.6 854 67.8
MD16G1117400 Malus domestica HOM05D004097 ORTHO05D005352 0.0e+00 1212.6 852 68.0
Gohir.A01G155000 Gossypium hirsutum HOM05D004097 ORTHO05D005352 0.0e+00 1208.7 854 67.4
TAR629G3065 Trochodendron aralioides HOM05D004097 ORTHO05D005352 0.0e+00 1208.7 887 65.6
Nn4g22358 Nelumbo nucifera HOM05D004097 ORTHO05D005352 0.0e+00 1207.6 860 66.7
Duzib248G1376 Durio zibethinus HOM05D004097 ORTHO05D005352 0.0e+00 1202.2 855 67.4
Glyma.05G146500 Glycine max HOM05D004097 ORTHO05D005352 0.0e+00 1199.5 852 67.3
Rhsim12G0102000 Rhododendron simsii HOM05D004097 ORTHO05D005352 0.0e+00 1196.4 971 61.3
FAN17G1448 Fragaria x ananassa HOM05D004097 ORTHO05D005352 0.0e+00 1194.5 871 65.9
FAN12G2099 Fragaria x ananassa HOM05D004097 ORTHO05D005352 0.0e+00 1193.7 862 66.7
Lj6C825T6 Lonicera japonica HOM05D004097 ORTHO05D005352 0.0e+00 1192.6 883 65.2
arahy.Tifrunner.gnm1.ann1.11CB4V Arachis hypogaea HOM05D004097 ORTHO05D005352 0.0e+00 1190.3 853 66.8
Dinv14824 Davidia involucrata HOM05D004097 ORTHO05D005352 0.0e+00 1188.3 811 70.3
Actinidia20697 Actinidia chinensis HOM05D004097 ORTHO05D005352 0.0e+00 1187.6 812 69.7
VMungo0251G0768 Vigna mungo HOM05D004097 ORTHO05D005352 0.0e+00 1186.8 852 66.5
Lalb_Chr13g0294221 Lupinus albus HOM05D004097 ORTHO05D005352 0.0e+00 1183.7 853 66.6
Psat7g078160 Pisum sativum HOM05D004097 ORTHO05D005352 0.0e+00 1183.7 852 66.1
Lj4g0020055 Lotus japonicus HOM05D004097 ORTHO05D005352 0.0e+00 1183.3 852 66.7
TWI18G1202 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 0.0e+00 1182.9 852 66.5
arahy.Tifrunner.gnm1.ann1.7LT28F Arachis hypogaea HOM05D004097 ORTHO05D005352 0.0e+00 1182.5 853 66.6
Phvul.002G174800 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 0.0e+00 1175.2 852 65.6
TPR.G17087 Trifolium pratense HOM05D004097 ORTHO05D005352 0.0e+00 1174.1 853 66.1
Oeu019032.1 Olea europaea HOM05D004097 ORTHO05D005352 0.0e+00 1173.3 854 65.9
Hma1.2p1_0668F.1_g200000 Hydrangea macrophylla HOM05D004097 ORTHO05D005352 0.0e+00 1171.8 825 67.4
Medtr8g080360 Medicago truncatula HOM05D004097 ORTHO05D005352 0.0e+00 1170.2 852 65.1
Ca_18044_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 0.0e+00 1168.7 852 64.6
Aqoxy5G03417 Aquilegia oxysepala HOM05D004097 ORTHO05D005352 0.0e+00 1168.3 855 65.6
Sabra10G0046600 Salix brachista HOM05D004097 ORTHO05D005352 0.0e+00 1166.0 851 65.9
Cc00_g13540 Coffea canephora HOM05D004097 ORTHO05D005352 0.0e+00 1158.7 853 65.1
Hund25455 Selenicereus undatus HOM05D004097 ORTHO05D005352 0.0e+00 1157.1 860 64.2
THA.LOC104807884 Tarenaya hassleriana HOM05D004097 ORTHO05D005352 0.0e+00 1155.6 853 63.8
Sopen05g010470 Solanum pennellii HOM05D004097 ORTHO05D005352 0.0e+00 1154.8 853 64.8
MBI11_g07450_MAGBIO Magnolia biondii HOM05D004097 ORTHO05D005352 0.0e+00 1148.7 860 64.7
Psat7g078280 Pisum sativum HOM05D004097 ORTHO05D005352 0.0e+00 1147.9 856 64.3
CAN.G1548.3 Capsicum annuum HOM05D004097 ORTHO05D005352 0.0e+00 1147.5 853 64.5
Glyma.05G146400 Glycine max HOM05D004097 ORTHO05D005352 0.0e+00 1144.0 850 64.7
Carub.0002s1382 Capsella rubella HOM05D004097 ORTHO05D005352 0.0e+00 1140.2 855 63.3
AT1G67490 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 0.0e+00 1138.6 855 63.3
PSO017G2193 Papaver somniferum HOM05D004097 ORTHO05D005352 0.0e+00 1138.6 858 64.0
EL10Ac6g13480 Beta vulgaris HOM05D004097 ORTHO05D005352 0.0e+00 1134.4 854 63.3
MSTRG.7991 Avicennia marina HOM05D004097 ORTHO05D005352 0.0e+00 1134.0 853 63.8
CAN.G311.73 Capsicum annuum HOM05D004097 ORTHO05D005352 0.0e+00 1133.6 877 62.7
TPR.G17069 Trifolium pratense HOM05D004097 ORTHO05D005352 0.0e+00 1132.5 850 63.8
PSO478G3686 Papaver somniferum HOM05D004097 ORTHO05D005352 0.0e+00 1130.5 858 63.5
Sp5g22470 Schrenkiella parvula HOM05D004097 ORTHO05D005352 0.0e+00 1128.2 855 62.7
AL2G26080 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 0.0e+00 1120.5 887 61.0
C06p38670 Brassica napus HOM05D004097 ORTHO05D005352 0.0e+00 1120.5 857 63.0
BraA07t30877Z Brassica rapa HOM05D004097 ORTHO05D005352 0.0e+00 1118.6 863 62.5
BolC6t38956H Brassica oleracea HOM05D004097 ORTHO05D005352 0.0e+00 1116.3 857 62.4
ATR0561G059 Amborella trichopoda HOM05D004097 ORTHO05D005352 0.0e+00 1115.1 851 62.4
A07p32530 Brassica napus HOM05D004097 ORTHO05D005352 0.0e+00 1113.6 859 62.5
HanXRQChr17g0540261 Helianthus annuus HOM05D004097 ORTHO05D005352 0.0e+00 1108.2 860 62.1
Thhalv10018104m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 0.0e+00 1100.1 894 60.2
Aa31sc781G10 Aethionema arabicum HOM05D004097 ORTHO05D005352 0.0e+00 1098.6 872 61.1
Medtr8g080290 Medicago truncatula HOM05D004097 ORTHO05D005352 0.0e+00 1098.2 850 61.4
Migut.K00711 Erythranthe guttata HOM05D004097 ORTHO05D005352 0.0e+00 1097.4 857 62.1
ECA246G4064 Erigeron canadensis HOM05D004097 ORTHO05D005352 0.0e+00 1095.1 856 62.0
AUR62005598 Chenopodium quinoa HOM05D004097 ORTHO05D005352 0.0e+00 1084.7 868 59.3
SalBow2G2696 Salvia bowleyana HOM05D004097 ORTHO05D005352 0.0e+00 1082.4 867 61.0
Lalb_Chr13g0294231 Lupinus albus HOM05D004097 ORTHO05D005352 5.3e-311 1070.8 751 66.0
PSO675G1898 Papaver somniferum HOM05D004097 ORTHO05D005352 8.8e-311 1070.1 786 64.5
Lsat_1_v5_gn_3_29780 Lactuca sativa HOM05D004097 ORTHO05D005352 3.7e-309 1064.7 854 60.8
Sp1g23450 Schrenkiella parvula HOM05D004097 ORTHO05D005352 4.9e-309 1064.3 777 63.7
CARHR026770 Cardamine hirsuta HOM05D004097 ORTHO05D005352 1.1e-308 1063.1 783 63.1
Thhalv10006835m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 5.4e-308 1060.8 774 63.8
Atru.chr11.2303 Acer truncatum HOM05D004097 ORTHO05D005352 7.1e-308 1060.4 766 66.8
Ah.02g130710 Amaranthus hybridus HOM05D004097 ORTHO05D005352 7.1e-308 1060.4 862 59.3
SGA_v2.0_scaffold130G34253 Striga asiatica HOM05D004097 ORTHO05D005352 1.2e-307 1059.7 854 60.2
Solyc05g015220.3 Solanum lycopersicum HOM05D004097 ORTHO05D005352 1.3e-306 1056.2 727 68.0
HPP92_023192 Vanilla planifolia HOM05D004097 ORTHO05D005352 1.9e-305 1052.4 864 58.6
AL1G40600 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 3.6e-304 1048.1 790 62.0
DCAR_031191 Daucus carota HOM05D004097 ORTHO05D005352 3.6e-304 1048.1 851 60.0
Ca_18045_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 1.1e-303 1046.6 881 58.7
C07p17980 Brassica napus HOM05D004097 ORTHO05D005352 3.1e-303 1045.0 774 63.3
BcaC06g35272 Brassica carinata HOM05D004097 ORTHO05D005352 9.9e-302 1040.0 774 62.9
AT1G24320 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 2.2e-301 1038.9 776 61.9
AUR62024129 Chenopodium quinoa HOM05D004097 ORTHO05D005352 4.1e-300 1034.6 841 59.1
A07p12040 Brassica napus HOM05D004097 ORTHO05D005352 6.6e-298 1027.3 810 60.4
BcaB03g15361 Brassica carinata HOM05D004097 ORTHO05D005352 8.6e-298 1026.9 859 59.8
Os01g0921200 Oryza sativa ssp. japonica HOM05D004097 ORTHO05D005352 1.9e-297 1025.8 823 58.3
BcaB03g13994 Brassica carinata HOM05D004097 ORTHO05D005352 4.3e-297 1024.6 778 62.2
Peaxi162Scf00128g01140 Petunia axillaris HOM05D004097 ORTHO05D005352 3.6e-296 1021.5 718 66.2
BcaB03g13996 Brassica carinata HOM05D004097 ORTHO05D005352 5.2e-295 1017.7 777 61.5
BolC7t42308H Brassica oleracea HOM05D004097 ORTHO05D005352 2.3e-290 1002.3 776 61.5
Zm00001eb143210 Zea mays HOM05D004097 ORTHO05D005352 6.2e-288 994.2 866 54.8
Carub.0001s2575 Capsella rubella HOM05D004097 ORTHO05D005352 1.8e-287 992.6 735 63.4
SEGI_39835 Sequoiadendron giganteum HOM05D004097 ORTHO05D005352 2.4e-287 992.3 843 56.7
CDE05G0715 Ceratophyllum demersum HOM05D004097 ORTHO05D005352 4.9e-285 984.6 853 56.7
SHI17952 Sapria himalayana HOM05D004097 ORTHO05D005352 3.9e-282 974.9 914 53.2
Aa31LG7G6710 Aethionema arabicum HOM05D004097 ORTHO05D005352 2.7e-267 925.6 806 56.7
DCAR_026468 Daucus carota HOM05D004097 ORTHO05D005352 9.6e-265 917.1 851 54.8
Mapoly0071s0095 Marchantia polymorpha HOM05D004097 ORTHO05D005352 2.9e-253 879.0 811 53.6
Sc04g0010030 Simmondsia chinensis HOM05D004097 ORTHO05D005352 1.4e-250 870.2 651 65.3
Sp1g06290 Schrenkiella parvula HOM05D004097 ORTHO05D005352 4.2e-244 848.6 769 54.7
Haze_12390 Corylus avellana HOM05D004097 ORTHO05D005352 3.6e-243 845.5 605 68.3
A10p06090 Brassica napus HOM05D004097 ORTHO05D005352 5.3e-239 831.6 796 52.9
Pp3c11_13660 Physcomitrium patens HOM05D004097 ORTHO05D005352 1.2e-238 830.5 852 48.8
SMO358G0259 Selaginella moellendorffii HOM05D004097 ORTHO05D005352 5.5e-236 821.6 817 49.8
CBR_g11887 Chara braunii HOM05D004097 ORTHO05D005352 3.6e-227 792.3 820 48.5
Nitab4.5_0005179g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 4.4e-217 758.8 627 58.9
BcaB02g06725 Brassica carinata HOM05D004097 ORTHO05D005352 1.9e-212 743.4 774 50.3
CARHR060060 Cardamine hirsuta HOM05D004097 ORTHO05D005352 5.9e-206 721.8 471 69.9
Oeu036882.3 Olea europaea HOM05D004097 ORTHO05D005352 3.0e-205 719.5 663 56.0
AagrBONN_evm.TU.Sc2ySwM_344.2645 Anthoceros agrestis HOM05D004097 ORTHO05D005352 1.9e-196 690.3 672 49.7
Nitab4.5_0002174g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 1.1e-194 684.5 433 71.6
Ca_18046_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 3.9e-189 666.0 446 68.2
VMungo0251G3132 Vigna mungo HOM05D004097 ORTHO05D005352 1.9e-180 637.1 481 62.6
Phvul.002G174901 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 2.8e-179 633.3 533 58.2
BolC5t29329H Brassica oleracea HOM05D004097 ORTHO05D005352 3.1e-178 629.8 659 51.3
unitig_22.g6409 Utricularia gibba HOM05D004097 ORTHO05D005352 2.2e-176 623.6 591 53.8
Glyma.08G103233 Glycine max HOM05D004097 ORTHO05D005352 9.3e-175 618.2 426 66.9
Cre13.g579734 Chlamydomonas reinhardtii HOM05D004097 ORTHO05D005352 2.4e-167 593.6 870 39.5
C05p05580 Brassica napus HOM05D004097 ORTHO05D005352 5.1e-157 559.3 573 52.4
Glyma.08G103167 Glycine max HOM05D004097 ORTHO05D005352 2.2e-136 490.7 407 60.7
VMungo0251G3103 Vigna mungo HOM05D004097 ORTHO05D005352 2.3e-133 480.7 320 68.1
Haze_12355 Corylus avellana HOM05D004097 ORTHO05D005352 8.8e-133 478.8 779 38.1
Cpa.g.sc1279.1 Carica papaya HOM05D004097 ORTHO05D005352 3.2e-127 460.3 437 54.9
Haze_12391 Corylus avellana HOM05D004097 ORTHO05D005352 5.7e-116 422.9 273 71.1
Nitab4.5_0002174g0020 Nicotiana tabacum HOM05D004097 ORTHO05D005352 1.0e-112 412.1 333 59.8
FAN22G1343 Fragaria x ananassa HOM05D004097 ORTHO05D005352 1.8e-109 401.4 408 52.5
Prupe.1G228900 Prunus persica HOM05D004097 ORTHO05D005352 3.0e-109 400.6 449 51.0
MD16G1117300 Malus domestica HOM05D004097 ORTHO05D005352 2.9e-104 384.0 394 55.1
unitig_22.g6408 Utricularia gibba HOM05D004097 ORTHO05D005352 5.2e-85 320.1 242 61.2
Cfa024667 Carpinus fangiana HOM05D004097 ORTHO05D005352 1.1e-82 312.4 540 35.9
BraA10t42875Z Brassica rapa HOM05D004097 ORTHO05D108425 3.3e-79 300.8 844 30.3
Cpa.g.sc43.13 Carica papaya HOM05D004097 ORTHO05D005352 4.6e-65 253.8 202 56.9
Nitab4.5_0005179g0020 Nicotiana tabacum HOM05D004097 ORTHO05D036916 5.6e-63 246.9 210 57.6
Ca_18056_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 1.5e-52 212.2 166 58.4
Oeu036881.1 Olea europaea HOM05D004097 ORTHO05D005352 9.9e-52 209.5 139 69.8
Cpa.g.sc43.17 Carica papaya HOM05D004097 ORTHO05D116738 2.5e-47 194.9 102 80.4
TWI36G0648 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 6.0e-41 173.7 99 78.8
RcHm_v2.0_Chr7g0216361 Rosa chinensis HOM05D004097 ORTHO05D005352 7.9e-41 173.3 193 48.2
PSO724G1248 Papaver somniferum HOM05D004097 ORTHO05D005352 3.7e-30 137.9 155 43.9
CAN.G49.23 Capsicum annuum HOM05D004097 ORTHO05D005352 7.7e-28 130.2 80 72.5
CAN.G49.22 Capsicum annuum HOM05D004097 ORTHO05D043419 2.7e-25 121.7 86 65.1
Cpa.g.sc43.15 Carica papaya HOM05D004097 ORTHO05D043419 3.1e-21 108.2 78 65.4
Actinidia15018 Actinidia chinensis HOM05D004097 ORTHO05D054282 7.7e-20 103.6 83 59.0
Solyc05g015250.2 Solanum lycopersicum HOM05D004097 ORTHO05D036916 7.7e-20 103.6 126 45.2
Actinidia15017 Actinidia chinensis HOM05D004097 ORTHO05D055553 1.2e-17 96.3 93 52.7
Psat3g154560 Pisum sativum HOM05D001399 ORTHO05D001670 2.0e-15 89.0 84 54.8
Peaxi162Scf00128g01139 Petunia axillaris HOM05D004097 ORTHO05D036916 2.6e-15 88.6 82 54.9
Sabra10G0046700 Salix brachista HOM05D004097 ORTHO05D005352 5.7e-15 87.4 72 61.1
Actinidia15016 Actinidia chinensis HOM05D004097 ORTHO05D005352 2.4e-13 82.0 62 61.3
BcaB07g33265 Brassica carinata HOM05D004070 ORTHO05D032257 2.9e-11 75.1 95 41.1
BcaB07g33267 Brassica carinata HOM05D004070 ORTHO05D032257 2.9e-11 75.1 93 41.9
TAR624G1259 Trochodendron aralioides HOM05D000428 ORTHO05D009311 5.0e-11 74.3 39 79.5
MBI03_g17125_MAGBIO Magnolia biondii HOM05D000089 ORTHO05D000104 8.5e-11 73.6 44 75.0
Psat7g044200 Pisum sativum HOM05D003089 ORTHO05D003544 1.4e-10 72.8 83 50.6
TAR626G1714 Trochodendron aralioides HOM05D000428 ORTHO05D009311 1.4e-10 72.8 38 81.6
TPR.G36369 Trifolium pratense HOM05D004097 ORTHO05D001670 6.7e-08 63.9 64 57.8


User provided reference genes

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