Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C011427.2 Cucumis melo HOM05D006135 ORTHO05D007533 3.6e-166 588.2 301 100.0
CsaV3_6G032530 Cucumis sativus L. HOM05D006135 ORTHO05D007533 4.1e-162 574.7 301 97.3
CsaV3_6G033610 Cucumis sativus L. HOM05D006135 ORTHO05D007533 4.1e-162 574.7 301 97.3
Sed0023480 Sechium edule HOM05D006135 ORTHO05D007533 7.3e-151 537.3 303 90.4
COL.COLO4_27903 Corchorus olitorius HOM05D006135 ORTHO05D007533 8.7e-144 513.8 302 85.4
QL03p071327 Quercus lobata HOM05D006135 ORTHO05D007533 9.6e-143 510.4 302 85.8
Atru.chr11.1655 Acer truncatum HOM05D006135 ORTHO05D007533 2.1e-142 509.2 305 85.6
CiPaw.06G091600 Carya illinoinensis HOM05D006135 ORTHO05D007533 1.4e-141 506.5 303 84.2
Thecc.02G333100 Theobroma cacao HOM05D006135 ORTHO05D007533 5.3e-141 504.6 302 83.8
VMungo0331G1135 Vigna mungo HOM05D006135 ORTHO05D007533 9.0e-141 503.8 303 82.8
Gohir.A03G103900 Gossypium hirsutum HOM05D006135 ORTHO05D007533 1.2e-140 503.4 301 83.7
Lj3g0000255 Lotus japonicus HOM05D006135 ORTHO05D007533 1.2e-140 503.4 301 83.1
Duzib268G0538 Durio zibethinus HOM05D006135 ORTHO05D007533 3.4e-140 501.9 301 83.7
MD16G1062500 Malus domestica HOM05D006135 ORTHO05D007533 5.8e-140 501.1 303 82.8
Gohir.D02G129100 Gossypium hirsutum HOM05D006135 ORTHO05D007533 1.3e-139 500.0 301 83.4
Gorai.005G144800 Gossypium raimondii HOM05D006135 ORTHO05D007533 1.3e-139 500.0 301 83.4
Cpa.g.sc1.112 Carica papaya HOM05D006135 ORTHO05D007533 1.7e-139 499.6 302 83.4
Ciclev10032231m.g Citrus clementina HOM05D006135 ORTHO05D007533 2.2e-139 499.2 302 83.4
Eucgr.G02457 Eucalyptus grandis HOM05D006135 ORTHO05D007533 1.1e-138 496.9 303 82.5
Phvul.010G098900 Phaseolus vulgaris HOM05D006135 ORTHO05D007533 1.1e-138 496.9 303 81.5
Phvul.011G076500 Phaseolus vulgaris HOM05D006135 ORTHO05D007533 1.1e-138 496.9 303 81.5
Sabra10G0121200 Salix brachista HOM05D006135 ORTHO05D007533 1.1e-138 496.9 303 82.2
Lalb_Chr10g0096961 Lupinus albus HOM05D006135 ORTHO05D007533 1.4e-138 496.5 303 82.8
RcHm_v2.0_Chr4g0438561 Rosa chinensis HOM05D006135 ORTHO05D007533 2.4e-138 495.7 303 82.5
Glyma.07G070800 Glycine max HOM05D006135 ORTHO05D007533 1.2e-137 493.4 303 80.9
Potri.008G094600 Populus trichocarpa HOM05D006135 ORTHO05D007533 1.6e-137 493.0 303 83.2
PGR119G0479 Punica granatum HOM05D006135 ORTHO05D007533 2.1e-137 492.7 303 82.5
Manes.07G067750 Manihot esculenta HOM05D006135 ORTHO05D007533 3.5e-137 491.9 303 80.9
Manes.07G067800 Manihot esculenta HOM05D006135 ORTHO05D007533 3.5e-137 491.9 303 80.9
Prupe.1G285000 Prunus persica HOM05D006135 ORTHO05D007533 1.0e-136 490.3 303 81.2
FAN07G2159 Fragaria x ananassa HOM05D006135 ORTHO05D007533 1.8e-136 489.6 303 81.8
FAN12G3645 Fragaria x ananassa HOM05D006135 ORTHO05D007533 3.0e-136 488.8 303 81.8
FAN17G2903 Fragaria x ananassa HOM05D006135 ORTHO05D007533 8.7e-136 487.3 303 81.2
FvH4_4g30260 Fragaria vesca HOM05D006135 ORTHO05D007533 1.5e-135 486.5 303 81.5
Cc11_g12150 Coffea canephora HOM05D006135 ORTHO05D007533 1.9e-135 486.1 301 81.1
FAN22G2161 Fragaria x ananassa HOM05D006135 ORTHO05D007533 2.5e-135 485.7 303 80.9
Rhsim08G0202600 Rhododendron simsii HOM05D006135 ORTHO05D007533 2.5e-135 485.7 303 80.2
THA.LOC104824063 Tarenaya hassleriana HOM05D006135 ORTHO05D007533 3.3e-135 485.3 301 79.7
Peaxi162Scf00155g00910 Petunia axillaris HOM05D006135 ORTHO05D007533 5.6e-135 484.6 300 81.3
Sc04g0007660 Simmondsia chinensis HOM05D006135 ORTHO05D007533 6.2e-134 481.1 303 78.9
Lj6P780T42 Lonicera japonica HOM05D006135 ORTHO05D007533 8.1e-134 480.7 301 81.1
Oeu004576.4 Olea europaea HOM05D006135 ORTHO05D007533 1.1e-133 480.3 301 79.7
Hma1.2p1_0357F.1_g134610 Hydrangea macrophylla HOM05D006135 ORTHO05D007533 1.4e-133 479.9 303 79.2
SalBow2G2095 Salvia bowleyana HOM05D006135 ORTHO05D007533 1.8e-133 479.6 303 79.2
AUR62013291 Chenopodium quinoa HOM05D006135 ORTHO05D007533 3.1e-133 478.8 301 79.7
AUR62007931 Chenopodium quinoa HOM05D006135 ORTHO05D007533 1.2e-132 476.9 301 79.4
EL10Ac6g14988 Beta vulgaris HOM05D006135 ORTHO05D007533 2.6e-132 475.7 300 79.7
MSTRG.745 Avicennia marina HOM05D006135 ORTHO05D007533 3.4e-132 475.3 303 78.2
PGSC0003DMG400005786 Solanum tuberosum HOM05D006135 ORTHO05D007533 7.6e-132 474.2 303 79.2
CAN.G792.64 Capsicum annuum HOM05D006135 ORTHO05D007533 9.9e-132 473.8 303 78.9
CSS0045883 Camellia sinensis var. sinensis HOM05D006135 ORTHO05D007533 1.3e-131 473.4 303 78.2
Sopen08g004100 Solanum pennellii HOM05D006135 ORTHO05D007533 1.3e-131 473.4 303 78.9
Aa31LG2G7130 Aethionema arabicum HOM05D006135 ORTHO05D007533 2.2e-131 472.6 300 77.7
Migut.L01201 Erythranthe guttata HOM05D006135 ORTHO05D007533 8.4e-131 470.7 299 76.9
HanXRQChr12g0375331 Helianthus annuus HOM05D006135 ORTHO05D007533 2.4e-130 469.2 303 77.6
ECA246G3492 Erigeron canadensis HOM05D006135 ORTHO05D007533 3.2e-130 468.8 303 76.6
TAR622G1353 Trochodendron aralioides HOM05D006135 ORTHO05D007533 7.1e-130 467.6 303 78.5
SalBow6G2218 Salvia bowleyana HOM05D006135 ORTHO05D007533 1.0e-128 463.8 295 76.9
CANSAT64G3010 Cannabis sativa HOM05D006135 ORTHO05D007533 1.8e-128 463.0 304 77.3
TPR.G19440 Trifolium pratense HOM05D006135 ORTHO05D007533 1.1e-127 460.3 305 75.7
Medtr8g446960 Medicago truncatula HOM05D006135 ORTHO05D007533 2.5e-127 459.1 306 76.8
Medtr8g030830 Medicago truncatula HOM05D006135 ORTHO05D007533 5.6e-127 458.0 306 76.8
CANSAT64G1447 Cannabis sativa HOM05D006135 ORTHO05D007533 9.6e-127 457.2 304 77.0
A08p32230 Brassica napus HOM05D006135 ORTHO05D007533 1.6e-126 456.4 298 73.8
AL1G25700 Arabidopsis lyrata HOM05D006135 ORTHO05D007533 2.1e-126 456.1 298 75.2
Sp1g12090 Schrenkiella parvula HOM05D006135 ORTHO05D007533 2.8e-126 455.7 298 74.8
BraA08t35146Z Brassica rapa HOM05D006135 ORTHO05D007533 8.2e-126 454.1 298 73.5
BcaC07g41617 Brassica carinata HOM05D006135 ORTHO05D007533 1.1e-125 453.8 298 74.5
Carub.0001s1357 Capsella rubella HOM05D006135 ORTHO05D007533 1.1e-125 453.8 298 74.8
C08p46210 Brassica napus HOM05D006135 ORTHO05D007533 1.4e-125 453.4 298 74.8
BolC8t52170H Brassica oleracea HOM05D006135 ORTHO05D007533 1.4e-125 453.4 298 74.8
CARHR014240 Cardamine hirsuta HOM05D006135 ORTHO05D007533 5.3e-125 451.4 298 74.2
BcaB08g34333 Brassica carinata HOM05D006135 ORTHO05D007533 6.9e-125 451.1 300 73.7
Psat4g154880 Pisum sativum HOM05D006135 ORTHO05D007533 9.0e-125 450.7 305 76.1
AT1G13870 Arabidopsis thaliana HOM05D006135 ORTHO05D007533 1.2e-124 450.3 298 74.2
Lsat_1_v5_gn_3_56041 Lactuca sativa HOM05D006135 ORTHO05D007533 2.6e-124 449.1 303 73.3
BcaB03g13127 Brassica carinata HOM05D006135 ORTHO05D007533 3.4e-124 448.7 298 72.8
A09p62650 Brassica napus HOM05D006135 ORTHO05D007533 4.5e-124 448.4 300 73.7
PSO170G2502 Papaver somniferum HOM05D006135 ORTHO05D007533 4.5e-124 448.4 300 74.0
BraA09t41629Z Brassica rapa HOM05D006135 ORTHO05D007533 5.8e-124 448.0 300 74.0
BcaC07g38705 Brassica carinata HOM05D006135 ORTHO05D007533 1.0e-123 447.2 298 72.8
C08p16350 Brassica napus HOM05D006135 ORTHO05D007533 1.0e-123 447.2 298 72.8
BolC8t49259H Brassica oleracea HOM05D006135 ORTHO05D007533 1.0e-123 447.2 298 72.8
Aa31LG1G1130 Aethionema arabicum HOM05D006135 ORTHO05D007533 1.9e-122 443.0 298 74.2
TAR374G0384 Trochodendron aralioides HOM05D006135 ORTHO05D007533 4.2e-122 441.8 305 75.4
Ah.04g155380 Amaranthus hybridus HOM05D001254 ORTHO05D007533 1.6e-121 439.9 287 77.4
Dinv34082 Davidia involucrata HOM05D006135 ORTHO05D008017 1.6e-121 439.9 293 76.1
unitig_22.g6497 Utricularia gibba HOM05D006135 ORTHO05D007533 5.1e-120 434.9 303 72.6
Sabra08G0071100 Salix brachista HOM05D006135 ORTHO05D007533 6.7e-120 434.5 275 81.1
PSO017G0525 Papaver somniferum HOM05D006135 ORTHO05D007533 4.3e-119 431.8 300 73.0
HPP92_017746 Vanilla planifolia HOM05D006135 ORTHO05D007533 5.7e-119 431.4 301 73.1
SGA_v2.0_scaffold308G48068 Striga asiatica HOM05D006135 ORTHO05D007533 1.8e-117 426.4 306 70.3
Zm00001eb298610 Zea mays HOM05D006135 ORTHO05D007533 1.8e-117 426.4 300 72.0
MBI03_g07691_MAGBIO Magnolia biondii HOM05D006135 ORTHO05D007533 4.1e-117 425.2 311 70.4
ClCG08G010310 Citrullus lanatus HOM05D006135 ORTHO05D008017 1.7e-115 419.9 225 93.3
SGA_v2.0_scaffold36G14447 Striga asiatica HOM05D006135 ORTHO05D007533 1.6e-113 413.3 306 69.0
Solyc08g008250.3 Solanum lycopersicum HOM05D006135 ORTHO05D007533 8.2e-110 401.0 251 80.9
HanXRQChr13g0417131 Helianthus annuus HOM05D006135 ORTHO05D007533 4.1e-109 398.7 251 78.9
Pp3c10_170 Physcomitrium patens HOM05D006135 ORTHO05D007533 1.0e-104 384.0 303 65.0
SHI21260 Sapria himalayana HOM05D006135 ORTHO05D007533 2.2e-102 376.3 298 64.8
Haze_11974 Corylus avellana HOM05D006135 ORTHO05D007533 1.2e-100 370.5 215 85.1
Duzib251G0397 Durio zibethinus HOM05D006135 ORTHO05D007533 1.5e-100 370.2 235 79.6
Nitab4.5_0000607g0040 Nicotiana tabacum HOM05D006135 ORTHO05D007533 7.7e-100 367.9 263 73.4
Nitab4.5_0000100g0120 Nicotiana tabacum HOM05D006135 ORTHO05D007533 2.2e-99 366.3 232 79.7
SMO115G0347 Selaginella moellendorffii HOM05D006135 ORTHO05D007533 1.9e-98 363.2 305 61.3
SalBow6G7020 Salvia bowleyana HOM05D006135 ORTHO05D007533 6.7e-96 354.8 225 77.3
CDE04G1019 Ceratophyllum demersum HOM05D006135 ORTHO05D007533 1.1e-95 354.0 248 71.0
SalBow2G1772 Salvia bowleyana HOM05D006135 ORTHO05D007533 2.0e-95 353.2 221 79.2
ATR1136G145 Amborella trichopoda HOM05D006135 ORTHO05D007533 7.0e-93 344.7 254 67.7
Aqoxy6G00083 Aquilegia oxysepala HOM05D006135 ORTHO05D007533 8.5e-91 337.8 219 77.2
Mapoly0008s0061 Marchantia polymorpha HOM05D006135 ORTHO05D007533 2.3e-88 329.7 277 59.9
CBR_g32247 Chara braunii HOM05D006135 ORTHO05D007533 6.1e-81 305.1 339 51.0
Nn3g17430 Nelumbo nucifera HOM05D006135 ORTHO05D007533 1.4e-77 293.9 301 56.1
vmacro19077 Vaccinium macrocarpon HOM05D006135 ORTHO05D007533 5.2e-72 275.4 173 77.5
Cre17.g711050 Chlamydomonas reinhardtii HOM05D006135 ORTHO05D007533 3.9e-59 232.6 319 42.9
Pp3c8_25320 Physcomitrium patens HOM05D006135 ORTHO05D007533 3.4e-47 193.0 163 62.0
Oeu025274.1 Olea europaea HOM05D006135 ORTHO05D007533 3.7e-46 189.5 143 69.2
PRCOL_00001916 Prasinoderma coloniale HOM05D006135 ORTHO05D007533 7.8e-44 181.8 341 36.4
MCO02G221 Micromonas commoda HOM05D006135 ORTHO05D007533 6.6e-43 178.7 177 52.5
GSVIVG01012190001 Vitis vinifera HOM05D001577 ORTHO05D008017 4.4e-39 166.0 303 38.6
SEGI_02005 Sequoiadendron giganteum HOM05D006135 ORTHO05D007533 2.9e-38 163.3 105 74.3
Dinv16720 Davidia involucrata HOM05D006135 ORTHO05D007533 9.0e-32 141.7 81 82.7
DCAR_030035 Daucus carota HOM05D006135 ORTHO05D007533 1.7e-30 137.5 91 75.8
Os11g0312340 Oryza sativa ssp. japonica HOM05D006135 ORTHO05D007533 1.3e-25 121.3 86 73.3
Lsat_1_v5_gn_2_78301 Lactuca sativa HOM05D006135 ORTHO05D007533 2.8e-25 120.2 91 67.0
AagrBONN_evm.TU.Sc2ySwM_362.1915 Anthoceros agrestis HOM05D006135 ORTHO05D007533 5.3e-24 115.9 74 68.9
HPP92_017676 Vanilla planifolia HOM05D006135 ORTHO05D007533 5.3e-24 115.9 138 50.7
Cfa026301 Carpinus fangiana HOM05D006135 ORTHO05D007533 2.0e-23 114.0 353 30.9
Lalb_Chr17g0339631 Lupinus albus HOM05D006135 ORTHO05D007533 5.1e-19 99.4 64 78.1
SEGI_31918 Sequoiadendron giganteum HOM05D006135 ORTHO05D007533 1.1e-16 91.7 61 63.9
Glyma.03G009300 Glycine max HOM05D006135 ORTHO05D007533 1.9e-13 80.9 46 82.6


User provided reference genes

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