Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C011137.2 Cucumis melo HOM05D005944 ORTHO05D007188 2.0e-135 485.7 239 100.0
Sed0026395 Sechium edule HOM05D005944 ORTHO05D007188 9.7e-98 360.5 237 75.9
Sed0020456 Sechium edule HOM05D005944 ORTHO05D007188 2.6e-90 335.9 222 75.2
QL12p041319 Quercus lobata HOM05D005944 ORTHO05D007188 1.3e-78 297.0 234 61.5
Manes.16G075200 Manihot esculenta HOM05D005944 ORTHO05D007188 2.9e-78 295.8 226 61.1
CiPaw.08G026000 Carya illinoinensis HOM05D005944 ORTHO05D007188 4.3e-77 292.0 229 61.6
Hma1.2p1_0049F.1_g028530 Hydrangea macrophylla HOM05D005944 ORTHO05D007188 9.5e-77 290.8 232 60.8
VMungo1309G1803 Vigna mungo HOM05D005944 ORTHO05D007188 3.6e-76 288.9 233 59.7
CSS0001771 Camellia sinensis var. sinensis HOM05D005944 ORTHO05D007188 4.7e-76 288.5 232 61.6
Prupe.1G447700 Prunus persica HOM05D005944 ORTHO05D007188 6.1e-76 288.1 239 59.8
MD08G1113400 Malus domestica HOM05D005944 ORTHO05D007188 1.0e-75 287.3 242 61.2
Cc08_g09670 Coffea canephora HOM05D005944 ORTHO05D007188 1.4e-75 287.0 231 59.7
TPR.G15103 Trifolium pratense HOM05D005944 ORTHO05D007188 1.2e-74 283.9 237 57.8
Cfa013369 Carpinus fangiana HOM05D005944 ORTHO05D007188 1.5e-74 283.5 229 60.3
Haze_21893 Corylus avellana HOM05D005944 ORTHO05D007188 2.6e-74 282.7 229 59.4
Lalb_Chr11g0064511 Lupinus albus HOM05D005944 ORTHO05D007188 2.6e-74 282.7 233 57.9
Phvul.009G110100 Phaseolus vulgaris HOM05D005944 ORTHO05D007188 3.4e-74 282.3 211 61.6
Potri.006G238000 Populus trichocarpa HOM05D005944 ORTHO05D007188 5.8e-74 281.6 242 55.4
Glyma.06G086100 Glycine max HOM05D005944 ORTHO05D007188 9.8e-74 280.8 229 60.3
Medtr3g109690 Medicago truncatula HOM05D005944 ORTHO05D007188 1.3e-73 280.4 237 57.4
Thecc.09G045700 Theobroma cacao HOM05D005944 ORTHO05D007188 1.7e-73 280.0 233 58.8
Gorai.010G106200 Gossypium raimondii HOM05D005944 ORTHO05D007188 2.9e-73 279.3 213 62.4
DCAR_003123 Daucus carota HOM05D005944 ORTHO05D007188 3.7e-73 278.9 237 56.1
TAR626G0255 Trochodendron aralioides HOM05D005944 ORTHO05D007188 6.4e-73 278.1 230 60.0
Gohir.D06G092200 Gossypium hirsutum HOM05D005944 ORTHO05D007188 8.3e-73 277.7 213 62.0
TWI34G0404 Tripterygium wilfordii HOM05D005944 ORTHO05D007188 1.1e-72 277.3 225 59.1
Duzib168G0738 Durio zibethinus HOM05D005944 ORTHO05D007188 1.4e-72 276.9 213 61.5
Gohir.A06G092600 Gossypium hirsutum HOM05D005944 ORTHO05D007188 1.4e-72 276.9 213 62.0
Psat5g021160 Pisum sativum HOM05D005944 ORTHO05D007188 1.8e-72 276.6 234 54.7
TWI63G0268 Tripterygium wilfordii HOM05D005944 ORTHO05D007188 2.4e-72 276.2 225 59.6
Rhsim07G0147000 Rhododendron simsii HOM05D005944 ORTHO05D007188 1.2e-71 273.9 238 57.6
Ca_15588_v3 Cicer arietinum L. HOM05D005944 ORTHO05D007188 1.6e-71 273.5 236 56.4
COL.COLO4_20974 Corchorus olitorius HOM05D005944 ORTHO05D007188 2.7e-71 272.7 214 60.3
MBI01_g42891_MAGBIO Magnolia biondii HOM05D005944 ORTHO05D007188 2.7e-71 272.7 227 57.7
Eucgr.C00599 Eucalyptus grandis HOM05D005944 ORTHO05D007188 6.0e-71 271.6 239 56.5
Oeu031102.1 Olea europaea HOM05D005944 ORTHO05D007188 1.3e-70 270.4 228 58.3
Sc09g0009310 Simmondsia chinensis HOM05D005944 ORTHO05D007188 2.3e-70 269.6 231 56.7
CiPaw.07G203800 Carya illinoinensis HOM05D005944 ORTHO05D007188 3.0e-70 269.2 235 55.7
MSTRG.11696 Avicennia marina HOM05D005944 ORTHO05D007188 3.9e-70 268.9 235 57.0
Nn8g39119 Nelumbo nucifera HOM05D005944 ORTHO05D007188 5.0e-70 268.5 234 56.4
vmacro23277 Vaccinium macrocarpon HOM05D005944 ORTHO05D007188 8.6e-70 267.7 225 59.1
PSO173G0044 Papaver somniferum HOM05D005944 ORTHO05D007188 1.5e-69 266.9 234 57.3
MD15G1092800 Malus domestica HOM05D005944 ORTHO05D007188 3.3e-69 265.8 252 56.0
Cpa.g.sc78.4 Carica papaya HOM05D005944 ORTHO05D007188 2.8e-68 262.7 228 58.3
Ciclev10009275m.g Citrus clementina HOM05D005944 ORTHO05D007188 2.8e-68 262.7 237 54.9
Sabra06G0186300 Salix brachista HOM05D005944 ORTHO05D007188 1.1e-67 260.8 244 53.3
PGSC0003DMG400002225 Solanum tuberosum HOM05D005944 ORTHO05D007188 1.8e-67 260.0 230 53.9
Aqoxy7G01465 Aquilegia oxysepala HOM05D005944 ORTHO05D007188 2.3e-67 259.6 231 56.7
PGR031G3052 Punica granatum HOM05D005944 ORTHO05D007188 3.1e-67 259.2 248 53.6
Nitab4.5_0003794g0090 Nicotiana tabacum HOM05D005944 ORTHO05D007188 4.0e-67 258.8 240 53.3
Sopen08g020390 Solanum pennellii HOM05D005944 ORTHO05D007188 5.8e-66 255.0 237 51.9
Atru.chr7.2083 Acer truncatum HOM05D005944 ORTHO05D007188 7.5e-66 254.6 251 53.8
CANSAT25G1052 Cannabis sativa HOM05D005944 ORTHO05D007188 7.5e-66 254.6 248 54.8
Oeu030719.1 Olea europaea HOM05D005944 ORTHO05D007188 1.7e-65 253.4 231 56.3
Peaxi162Scf00227g00915 Petunia axillaris HOM05D005944 ORTHO05D007188 2.2e-65 253.1 205 57.1
Lj1g0013558 Lotus japonicus HOM05D005944 ORTHO05D007188 1.1e-64 250.8 215 55.3
Migut.A00199 Erythranthe guttata HOM05D005944 ORTHO05D007188 1.4e-64 250.4 235 54.9
EL10Ac2g04013 Beta vulgaris HOM05D005944 ORTHO05D007188 1.9e-64 250.0 209 56.5
Solyc08g066550.3 Solanum lycopersicum HOM05D005944 ORTHO05D007188 3.2e-64 249.2 238 50.8
Lsat_1_v5_gn_5_33661 Lactuca sativa HOM05D005944 ORTHO05D007188 1.6e-63 246.9 208 53.4
AUR62009271 Chenopodium quinoa HOM05D005944 ORTHO05D007188 4.6e-63 245.4 215 55.3
HanXRQChr08g0234421 Helianthus annuus HOM05D005944 ORTHO05D007188 1.3e-62 243.8 208 53.8
EL10Ac2g04010 Beta vulgaris HOM05D005944 ORTHO05D007188 2.3e-62 243.0 209 56.0
Ah.10g034990 Amaranthus hybridus HOM05D005944 ORTHO05D007188 3.0e-62 242.7 233 50.2
Nitab4.5_0001567g0220 Nicotiana tabacum HOM05D005944 ORTHO05D007188 3.9e-62 242.3 213 56.3
ECA246G4186 Erigeron canadensis HOM05D005944 ORTHO05D007188 8.6e-62 241.1 218 51.8
AUR62039710 Chenopodium quinoa HOM05D005944 ORTHO05D007188 3.3e-61 239.2 214 54.2
Sc09g0009320 Simmondsia chinensis HOM05D005944 ORTHO05D007188 7.3e-61 238.0 231 52.8
SalBow4G1457 Salvia bowleyana HOM05D005944 ORTHO05D007188 5.8e-58 228.4 228 50.4
PGSC0003DMG400018561 Solanum tuberosum HOM05D005944 ORTHO05D007188 5.8e-58 228.4 221 52.5
Nitab4.5_0000664g0190 Nicotiana tabacum HOM05D005944 ORTHO05D007188 7.5e-58 228.0 234 50.4
SGA_v2.0_scaffold243G44289 Striga asiatica HOM05D005944 ORTHO05D007188 7.5e-58 228.0 204 53.4
FvH4_2g35480 Fragaria vesca HOM05D005944 ORTHO05D007188 7.8e-55 218.0 209 51.2
FAN27G2199 Fragaria x ananassa HOM05D005944 ORTHO05D007188 1.0e-54 217.6 209 51.2
unitig_32.g11474 Utricularia gibba HOM05D005944 ORTHO05D007188 1.3e-54 217.2 234 49.6
Ah.02g111320 Amaranthus hybridus HOM05D005944 ORTHO05D007188 1.7e-54 216.9 220 50.0
TWI63G1513 Tripterygium wilfordii HOM05D005944 ORTHO05D007188 1.7e-54 216.9 215 49.3
RcHm_v2.0_Chr6g0306401 Rosa chinensis HOM05D005944 ORTHO05D007188 8.6e-54 214.5 209 51.2
FAN20G0862 Fragaria x ananassa HOM05D005944 ORTHO05D007188 1.9e-53 213.4 220 49.1
Zm00001eb384710 Zea mays HOM05D005944 ORTHO05D007188 1.9e-53 213.4 214 49.5
Nitab4.5_0001515g0030 Nicotiana tabacum HOM05D005944 ORTHO05D007188 3.3e-53 212.6 240 46.7
FAN15G0753 Fragaria x ananassa HOM05D005944 ORTHO05D007188 5.6e-53 211.8 209 50.2
AUR62011965 Chenopodium quinoa HOM05D005944 ORTHO05D007188 2.8e-52 209.5 210 48.6
Os06g0554100 Oryza sativa ssp. japonica HOM05D005944 ORTHO05D007188 4.7e-52 208.8 253 45.5
CARHR201600 Cardamine hirsuta HOM05D005944 ORTHO05D007188 4.0e-51 205.7 265 43.4
Carub.0006s1010 Capsella rubella HOM05D005944 ORTHO05D007188 1.5e-50 203.8 263 44.9
Thhalv10014372m.g Eutrema salsugineum HOM05D005944 ORTHO05D007188 7.6e-50 201.4 263 44.9
ECA233G3370 Erigeron canadensis HOM05D005944 ORTHO05D007188 1.7e-49 200.3 195 49.2
HanXRQChr02g0050591 Helianthus annuus HOM05D005944 ORTHO05D007188 2.2e-49 199.9 194 49.5
THA.LOC104799702 Tarenaya hassleriana HOM05D005944 ORTHO05D007188 2.2e-49 199.9 260 45.0
A10p26150 Brassica napus HOM05D005944 ORTHO05D007188 7.1e-48 194.9 266 42.1
BraA10t44674Z Brassica rapa HOM05D005944 ORTHO05D007188 7.1e-48 194.9 266 42.1
BcaC04g19210 Brassica carinata HOM05D005944 ORTHO05D007188 9.2e-48 194.5 266 42.1
C09p65200 Brassica napus HOM05D005944 ORTHO05D007188 9.2e-48 194.5 266 42.1
BolC9t59349H Brassica oleracea HOM05D005944 ORTHO05D007188 9.2e-48 194.5 266 42.1
Sp6g32000 Schrenkiella parvula HOM05D005944 ORTHO05D007188 9.2e-48 194.5 238 43.7
BcaB08g37038 Brassica carinata HOM05D005944 ORTHO05D007188 1.2e-47 194.1 264 43.2
AL6G22330 Arabidopsis lyrata HOM05D005944 ORTHO05D007188 2.7e-47 193.0 237 45.1
EL10Ac5g10487 Beta vulgaris HOM05D005944 ORTHO05D007188 2.3e-46 189.9 218 43.1
Aa31LG3G15570 Aethionema arabicum HOM05D005944 ORTHO05D007188 6.6e-46 188.3 265 40.8
AT5G11620 Arabidopsis thaliana HOM05D005944 ORTHO05D007188 6.6e-46 188.3 238 43.7
HPP92_024066 Vanilla planifolia HOM05D005944 ORTHO05D007188 1.7e-41 173.7 210 42.9
Glyma.04G084500 Glycine max HOM05D005944 ORTHO05D007188 1.4e-40 170.6 121 71.1
Actinidia14678 Actinidia chinensis HOM05D005944 ORTHO05D007188 3.2e-40 169.5 123 69.1
Peaxi162Scf00247g00005 Petunia axillaris HOM05D005944 ORTHO05D007188 7.8e-39 164.9 137 59.9
HanXRQChr13g0402041 Helianthus annuus HOM05D005944 ORTHO05D007188 1.6e-36 157.1 206 40.3
Sopen11g028870 Solanum pennellii HOM05D010581 ORTHO05D012655 4.8e-36 155.6 170 51.2
ATR0561G048 Amborella trichopoda HOM05D005944 ORTHO05D007188 8.1e-36 154.8 227 41.0
PSO824G0019 Papaver somniferum HOM05D005944 ORTHO05D007188 1.8e-35 153.7 207 42.5
Solyc11g071190.3 Solanum lycopersicum HOM05D005944 ORTHO05D007188 2.6e-34 149.8 122 59.0
PSO832G3272 Papaver somniferum HOM05D005944 ORTHO05D007188 3.5e-31 139.4 206 40.8
PSO832G4257 Papaver somniferum HOM05D005944 ORTHO05D007188 5.1e-30 135.6 200 38.0
PSO173G0086 Papaver somniferum HOM05D005944 ORTHO05D007188 2.1e-28 130.2 200 36.5
SEGI_16652 Sequoiadendron giganteum HOM05D005944 ORTHO05D007188 1.4e-27 127.5 222 38.3
Pp3c11_3140 Physcomitrium patens HOM05D005944 ORTHO05D007188 2.4e-27 126.7 250 36.0
PSO507G0019 Papaver somniferum HOM05D005944 ORTHO05D007188 9.0e-27 124.8 196 39.8
SMO244G0014 Selaginella moellendorffii HOM05D005944 ORTHO05D007188 2.9e-25 119.8 236 34.3
Zm00001eb277580 Zea mays HOM05D005944 ORTHO05D007188 6.4e-25 118.6 155 43.9
AagrBONN_evm.TU.Sc2ySwM_228.5588 Anthoceros agrestis HOM05D005944 ORTHO05D007188 1.4e-24 117.5 267 31.8
SMO281G0003 Selaginella moellendorffii HOM05D005944 ORTHO05D007188 5.5e-24 115.5 215 34.9
PSO824G0035 Papaver somniferum HOM05D004877 ORTHO05D007188 2.8e-20 103.2 222 32.4
PSO173G0103 Papaver somniferum HOM05D005944 ORTHO05D007188 8.2e-20 101.7 218 32.1
CDE05G1550 Ceratophyllum demersum HOM05D005944 ORTHO05D007188 4.5e-18 95.9 109 44.0
Cre09.g393550 Chlamydomonas reinhardtii HOM05D005944 ORTHO05D007188 8.4e-17 91.7 266 29.7
RcHm_v2.0_Chr6g0306391 Rosa chinensis HOM05D005944 ORTHO05D007188 3.0e-14 83.2 103 42.7
RcHm_v2.0_Chr6g0306291 Rosa chinensis HOM05D005944 ORTHO05D007188 4.8e-12 75.9 58 53.4
RcHm_v2.0_Chr6g0306281 Rosa chinensis HOM05D005944 ORTHO05D007188 1.8e-11 73.9 56 57.1
C02p05290 Brassica napus HOM05D005944 ORTHO05D007188 1.6e-07 60.8 108 34.3
BolC2t06477H Brassica oleracea HOM05D005944 ORTHO05D007188 1.6e-07 60.8 108 34.3
MCO02G382 Micromonas commoda HOM05D005944 ORTHO05D007188 6.1e-07 58.9 220 26.4


User provided reference genes

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