Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C011085.2 Cucumis melo HOM05D004194 ORTHO05D005641 3.3e-289 997.7 504 100.0
CsaV3_2G030250 Cucumis sativus L. HOM05D004194 ORTHO05D005641 4.5e-262 907.5 503 91.7
ClCG08G011660 Citrullus lanatus HOM05D004194 ORTHO05D005641 6.7e-258 893.6 506 90.3
Sed0011017 Sechium edule HOM05D004194 ORTHO05D005641 1.3e-248 862.8 504 86.7
CiPaw.07G165400 Carya illinoinensis HOM05D004194 ORTHO05D005641 3.2e-223 778.5 500 76.6
QL09p017817 Quercus lobata HOM05D004194 ORTHO05D005641 1.2e-222 776.5 498 77.9
Cfa013797 Carpinus fangiana HOM05D004194 ORTHO05D005641 2.3e-221 772.3 497 76.9
Sed0019515 Sechium edule HOM05D004194 ORTHO05D005641 2.5e-220 768.8 492 77.0
PGR042G2811 Punica granatum HOM05D004194 ORTHO05D005641 3.3e-220 768.5 495 75.8
Thecc.08G071000 Theobroma cacao HOM05D004194 ORTHO05D005641 4.3e-220 768.1 487 77.2
Haze_22460 Corylus avellana HOM05D004194 ORTHO05D005641 1.2e-219 766.5 497 76.3
RcHm_v2.0_Chr7g0216141 Rosa chinensis HOM05D004194 ORTHO05D005641 8.1e-219 763.8 502 75.9
Atru.chr13.1009 Acer truncatum HOM05D004194 ORTHO05D005641 1.1e-218 763.5 487 75.8
Actinidia10274 Actinidia chinensis HOM05D004194 ORTHO05D005641 1.4e-218 763.1 493 76.5
Manes.18G058500 Manihot esculenta HOM05D004194 ORTHO05D005641 1.4e-218 763.1 493 75.9
CsaV3_3G047990 Cucumis sativus L. HOM05D004194 ORTHO05D005641 5.2e-218 761.1 503 75.1
MELO3C003523.2 Cucumis melo HOM05D004194 ORTHO05D005641 8.9e-218 760.4 503 75.1
GSVIVG01009181001 Vitis vinifera HOM05D004194 ORTHO05D005641 2.0e-217 759.2 488 76.4
Prupe.1G532200 Prunus persica HOM05D004194 ORTHO05D005641 2.6e-217 758.8 499 75.4
CSS0028335 Camellia sinensis var. sinensis HOM05D004194 ORTHO05D005641 4.4e-217 758.1 486 77.4
VMungo1309G1669 Vigna mungo HOM05D004194 ORTHO05D005641 4.4e-217 758.1 476 77.3
FvH4_5g34710 Fragaria vesca HOM05D004194 ORTHO05D005641 7.5e-217 757.3 505 75.0
Cpa.g.sc21.21 Carica papaya HOM05D004194 ORTHO05D005641 9.8e-217 756.9 477 76.9
Sopen04g030120 Solanum pennellii HOM05D004194 ORTHO05D005641 9.8e-217 756.9 495 74.5
Lalb_Chr11g0064971 Lupinus albus HOM05D004194 ORTHO05D005641 1.3e-216 756.5 490 75.1
MD12G1008900 Malus domestica HOM05D004194 ORTHO05D005641 1.7e-216 756.1 500 75.2
Glyma.04G094600 Glycine max HOM05D004194 ORTHO05D005641 2.2e-216 755.7 479 76.6
CANSAT21G1481 Cannabis sativa HOM05D004194 ORTHO05D005641 2.9e-216 755.4 488 76.4
Gorai.002G139300 Gossypium raimondii HOM05D004194 ORTHO05D005641 2.9e-216 755.4 485 75.9
Gohir.D01G114300 Gossypium hirsutum HOM05D004194 ORTHO05D005641 3.7e-216 755.0 485 75.7
Ciclev10000871m.g Citrus clementina HOM05D004194 ORTHO05D005641 4.9e-216 754.6 482 75.9
Eucgr.F02151 Eucalyptus grandis HOM05D004194 ORTHO05D005641 8.3e-216 753.8 495 74.5
Duzib093G0846 Durio zibethinus HOM05D004194 ORTHO05D005641 1.4e-215 753.1 485 75.1
Glyma.06G096700 Glycine max HOM05D004194 ORTHO05D005641 1.4e-215 753.1 488 76.2
Phvul.002G296600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 1.4e-215 753.1 485 75.5
ECA232G1743 Erigeron canadensis HOM05D004194 ORTHO05D005641 2.4e-215 752.3 502 73.5
TAR625G0434 Trochodendron aralioides HOM05D004194 ORTHO05D005641 2.4e-215 752.3 498 73.7
Gohir.A01G126900 Gossypium hirsutum HOM05D004194 ORTHO05D005641 3.2e-215 751.9 497 74.6
vmacro17477 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 3.2e-215 751.9 496 74.8
Nn5g29879 Nelumbo nucifera HOM05D004194 ORTHO05D005641 5.4e-215 751.1 497 74.4
Medtr3g100220 Medicago truncatula HOM05D004194 ORTHO05D005641 7.1e-215 750.7 495 74.3
PGSC0003DMG400009343 Solanum tuberosum HOM05D004194 ORTHO05D005641 9.2e-215 750.4 512 72.3
FAN13G1619 Fragaria x ananassa HOM05D004194 ORTHO05D005641 1.2e-214 750.0 504 75.2
Rhsim06G0071600 Rhododendron simsii HOM05D004194 ORTHO05D005641 1.2e-214 750.0 512 72.1
Solyc04g076320.4 Solanum lycopersicum HOM05D004194 ORTHO05D005641 2.1e-214 749.2 495 73.9
AUR62004928 Chenopodium quinoa HOM05D004194 ORTHO05D005641 2.7e-214 748.8 480 75.2
Hma1.2p1_0010F.1_g006650 Hydrangea macrophylla HOM05D004194 ORTHO05D005641 4.6e-214 748.0 477 75.9
vmacro21340 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 6.0e-214 747.7 496 73.8
Cc10_g15890 Coffea canephora HOM05D004194 ORTHO05D005641 1.3e-213 746.5 493 74.2
TAR381G0874 Trochodendron aralioides HOM05D004194 ORTHO05D005641 1.7e-213 746.1 500 72.8
TWI12G1457 Tripterygium wilfordii HOM05D004194 ORTHO05D005641 3.9e-213 745.0 483 75.4
AUR62001023 Chenopodium quinoa HOM05D004194 ORTHO05D005641 5.1e-213 744.6 493 73.2
FAN18G1922 Fragaria x ananassa HOM05D004194 ORTHO05D005641 8.6e-213 743.8 522 72.2
Lj4A737T61 Lonicera japonica HOM05D004194 ORTHO05D005641 1.1e-212 743.4 482 74.9
DCAR_012855 Daucus carota HOM05D004194 ORTHO05D005641 1.5e-212 743.0 477 75.5
FAN08G1093 Fragaria x ananassa HOM05D004194 ORTHO05D005641 2.5e-212 742.3 537 70.9
PSO210G0577 Papaver somniferum HOM05D004194 ORTHO05D005641 5.6e-212 741.1 482 75.1
SalBow6G2182 Salvia bowleyana HOM05D004194 ORTHO05D005641 7.3e-212 740.7 486 74.9
TPR.G6303 Trifolium pratense HOM05D004194 ORTHO05D005641 7.3e-212 740.7 495 73.1
EL10Ac4g09117 Beta vulgaris HOM05D004194 ORTHO05D005641 9.5e-212 740.3 495 72.7
Peaxi162Scf00454g00416 Petunia axillaris HOM05D004194 ORTHO05D005641 1.2e-211 740.0 491 73.7
Lsat_1_v5_gn_6_104960 Lactuca sativa HOM05D004194 ORTHO05D005641 1.6e-211 739.6 487 74.5
Lj1g0000709 Lotus japonicus HOM05D004194 ORTHO05D005641 1.6e-211 739.6 480 75.0
CAN.G475.29 Capsicum annuum HOM05D004194 ORTHO05D005641 2.8e-211 738.8 477 73.8
Ca_23440_v3 Cicer arietinum L. HOM05D004194 ORTHO05D005641 2.8e-211 738.8 483 74.3
PSO170G4697 Papaver somniferum HOM05D004194 ORTHO05D005641 2.8e-211 738.8 482 75.1
CANSAT21G2248 Cannabis sativa HOM05D004194 ORTHO05D005641 4.7e-211 738.0 502 74.1
Hund21605 Selenicereus undatus HOM05D004194 ORTHO05D005641 4.7e-211 738.0 476 74.8
Lsat_1_v5_gn_9_75040 Lactuca sativa HOM05D004194 ORTHO05D005641 1.8e-210 736.1 504 72.8
FAN04G1572 Fragaria x ananassa HOM05D004194 ORTHO05D005641 2.3e-210 735.7 536 70.3
arahy.Tifrunner.gnm1.ann1.S0XZCZ Arachis hypogaea HOM05D004194 ORTHO05D005641 4.0e-210 734.9 475 74.9
MSTRG.28070 Avicennia marina HOM05D004194 ORTHO05D005641 4.0e-210 734.9 478 75.9
CDE02G0818 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 2.0e-209 732.6 502 71.3
arahy.Tifrunner.gnm1.ann1.N12FQY Arachis hypogaea HOM05D004194 ORTHO05D005641 4.4e-209 731.5 490 72.7
CDE01G0047 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 9.9e-209 730.3 502 70.9
Potri.002G106200 Populus trichocarpa HOM05D004194 ORTHO05D005641 2.2e-208 729.2 475 74.3
SGA_v2.0_scaffold5G02969 Striga asiatica HOM05D004194 ORTHO05D005641 2.2e-208 729.2 518 70.3
SalBow8G0776 Salvia bowleyana HOM05D004194 ORTHO05D005641 4.9e-208 728.0 508 71.7
Hund09317 Selenicereus undatus HOM05D004194 ORTHO05D005641 8.4e-208 727.2 495 72.5
Psat5g048920 Pisum sativum HOM05D004194 ORTHO05D005641 1.4e-207 726.5 475 74.7
A10p26770 Brassica napus HOM05D004194 ORTHO05D005641 4.1e-207 724.9 485 72.2
Thhalv10013269m.g Eutrema salsugineum HOM05D004194 ORTHO05D005641 5.4e-207 724.5 478 72.8
Sp6g32570 Schrenkiella parvula HOM05D004194 ORTHO05D005641 7.1e-207 724.2 476 73.1
ATR0767G266 Amborella trichopoda HOM05D004194 ORTHO05D005641 1.2e-206 723.4 477 73.2
C09p65910 Brassica napus HOM05D004194 ORTHO05D005641 1.2e-206 723.4 485 72.0
BraA10t44732Z Brassica rapa HOM05D004194 ORTHO05D005641 1.2e-206 723.4 485 71.8
THA.LOC104799791 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 1.2e-206 723.4 504 70.2
BolC9t59414H Brassica oleracea HOM05D004194 ORTHO05D005641 1.6e-206 723.0 485 72.0
Aa31LG3G16210 Aethionema arabicum HOM05D004194 ORTHO05D005641 4.6e-206 721.5 502 70.3
CARHR202370 Cardamine hirsuta HOM05D004194 ORTHO05D005641 6.0e-206 721.1 478 72.4
BcaNung01903 Brassica carinata HOM05D004194 ORTHO05D005641 7.8e-206 720.7 485 72.0
THA.LOC104806871 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 7.8e-206 720.7 479 72.2
ClCG11G014580 Citrullus lanatus HOM05D004194 ORTHO05D005641 1.3e-205 719.9 499 73.1
AT5G10920 Arabidopsis thaliana HOM05D004194 ORTHO05D005641 3.9e-205 718.4 478 72.2
Aqoxy6G00868 Aquilegia oxysepala HOM05D004194 ORTHO05D005641 1.5e-204 716.5 499 70.7
AL6G21480 Arabidopsis lyrata HOM05D004194 ORTHO05D005641 9.6e-204 713.8 487 70.6
Carub.0006s0941 Capsella rubella HOM05D004194 ORTHO05D005641 8.1e-203 710.7 478 71.5
COL.COLO4_35249 Corchorus olitorius HOM05D004194 ORTHO05D005641 8.4e-200 700.7 485 72.0
Sabra02G0083500 Salix brachista HOM05D004194 ORTHO05D005641 8.4e-200 700.7 525 67.0
Zm00001eb396370 Zea mays HOM05D004194 ORTHO05D005641 2.1e-198 696.0 491 69.2
unitig_578.g16695 Utricularia gibba HOM05D004194 ORTHO05D005641 2.7e-198 695.7 510 68.2
MBI16_g12466_MAGBIO Magnolia biondii HOM05D004194 ORTHO05D005641 1.0e-197 693.7 507 67.5
Pp3c18_13220 Physcomitrium patens HOM05D004194 ORTHO05D005641 3.0e-197 692.2 497 67.0
SMO143G0205 Selaginella moellendorffii HOM05D004194 ORTHO05D005641 3.0e-197 692.2 490 67.8
Mapoly0005s0193 Marchantia polymorpha HOM05D004194 ORTHO05D005641 1.4e-194 683.3 485 68.5
AagrBONN_evm.TU.Sc2ySwM_362.1891 Anthoceros agrestis HOM05D004194 ORTHO05D005641 4.0e-194 681.8 486 68.3
Migut.N01596 Erythranthe guttata HOM05D004194 ORTHO05D005641 1.3e-189 666.8 477 68.8
CBR_g48741 Chara braunii HOM05D004194 ORTHO05D005641 1.8e-189 666.4 495 64.2
Ah.06g192260 Amaranthus hybridus HOM05D004194 ORTHO05D005641 1.6e-187 659.8 428 73.8
SGA_v2.0_scaffold24G10675 Striga asiatica HOM05D004194 ORTHO05D005641 2.4e-186 656.0 422 75.4
SHI09678 Sapria himalayana HOM05D004194 ORTHO05D005641 7.6e-185 651.0 479 67.0
Os03g0305500 Oryza sativa ssp. japonica HOM05D004194 ORTHO05D005641 2.3e-181 639.4 463 68.0
HPP92_001058 Vanilla planifolia HOM05D004194 ORTHO05D005641 5.1e-181 638.3 480 66.0
MD14G1006200 Malus domestica HOM05D004194 ORTHO05D005641 2.8e-179 632.5 502 66.3
Nitab4.5_0010888g0020 Nicotiana tabacum HOM05D004194 ORTHO05D005641 1.4e-178 630.2 401 77.1
Nitab4.5_0000131g0240 Nicotiana tabacum HOM05D004194 ORTHO05D005641 3.1e-178 629.0 401 77.1
Dinv42612 Davidia involucrata HOM05D004194 ORTHO05D005641 1.6e-174 616.7 405 76.5
Phvul.009G036600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 1.8e-173 613.2 389 75.8
MD14G1006400 Malus domestica HOM05D004194 ORTHO05D005641 3.9e-173 612.1 421 73.4
BcaC01g05557 Brassica carinata HOM05D004194 ORTHO05D005641 1.6e-171 606.7 469 65.0
PRCOL_00005568 Prasinoderma coloniale HOM05D004194 ORTHO05D005641 1.6e-171 606.7 471 62.4
Lalb_Chr08g0242531 Lupinus albus HOM05D004194 ORTHO05D005641 3.7e-171 605.5 389 74.6
HanXRQChr15g0484861 Helianthus annuus HOM05D004194 ORTHO05D005641 1.1e-170 604.0 747 46.6
BcaC03g13340 Brassica carinata HOM05D004194 ORTHO05D005641 9.0e-170 600.9 487 64.5
BcaC04g19277 Brassica carinata HOM05D004194 ORTHO05D005641 2.6e-161 572.8 453 63.6
BolC2t06434H Brassica oleracea HOM05D004194 ORTHO05D005641 7.7e-161 571.2 476 62.8
C03p24950 Brassica napus HOM05D004194 ORTHO05D005641 1.4e-157 560.5 469 61.0
Sc11g0003910 Simmondsia chinensis HOM05D004194 ORTHO05D005641 4.7e-150 535.4 364 73.9
Actinidia33569 Actinidia chinensis HOM05D004194 ORTHO05D005641 1.5e-143 513.8 438 63.9
Oeu049772.1 Olea europaea HOM05D004194 ORTHO05D005641 1.3e-112 411.0 237 80.6
BcaNung01905 Brassica carinata HOM05D004194 ORTHO05D005641 2.0e-105 387.1 345 60.6
Sed0012940 Sechium edule HOM05D004194 ORTHO05D005641 2.7e-105 386.7 275 71.6
Lj4C718T1 Lonicera japonica HOM05D004194 ORTHO05D005641 6.2e-102 375.6 271 70.5
Cre01.g021251 Chlamydomonas reinhardtii HOM05D004194 ORTHO05D005641 1.2e-89 334.7 477 38.6
MCO11G430 Micromonas commoda HOM05D004194 ORTHO05D005641 2.7e-89 333.6 476 38.2
Cfa022469 Carpinus fangiana HOM05D004194 ORTHO05D005641 2.2e-83 313.9 479 37.8
C02p04750 Brassica napus HOM05D004194 ORTHO05D005641 3.2e-82 310.1 272 62.9
HPP92_001149 Vanilla planifolia HOM05D004194 ORTHO05D005641 1.5e-76 291.2 219 66.2
Oeu049771.1 Olea europaea HOM05D004194 ORTHO05D005641 2.2e-75 287.3 243 62.1
Ah.06g192250 Amaranthus hybridus HOM05D004194 ORTHO05D005641 5.1e-64 249.6 402 40.0
arahy.Tifrunner.gnm1.ann1.1M3GV3 Arachis hypogaea HOM05D004194 ORTHO05D005641 6.2e-62 242.7 131 87.8
Oeu035352.1 Olea europaea HOM05D004194 ORTHO05D005641 7.1e-58 229.2 148 77.7
Psat6g188680 Pisum sativum HOM05D004194 ORTHO05D005641 1.1e-55 221.9 167 65.3
PSO478G2000 Papaver somniferum HOM05D004194 ORTHO05D005641 4.5e-52 209.9 196 56.1
A02p00760 Brassica napus HOM05D004194 ORTHO05D005641 7.6e-52 209.1 164 65.2
SEGI_18549 Sequoiadendron giganteum HOM05D004194 ORTHO05D005641 1.8e-45 188.0 121 68.6
SEGI_11237 Sequoiadendron giganteum HOM05D004194 ORTHO05D005641 2.9e-43 180.6 98 86.7
BcaB01g03715 Brassica carinata HOM05D004194 ORTHO05D005641 1.1e-42 178.7 249 41.4
C02p04760 Brassica napus HOM05D004194 ORTHO05D005641 3.2e-42 177.2 129 60.5
Psat6g188720 Pisum sativum HOM05D001289 ORTHO05D005641 1.1e-37 162.2 119 66.4
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 2.2e-35 154.5 397 29.2
Actinidia19243 Actinidia chinensis HOM05D004194 ORTHO05D005641 3.0e-32 144.1 124 54.8
PSO349G0016 Papaver somniferum HOM05D004194 ORTHO05D005641 1.1e-31 142.1 80 80.0
VMungo0331G0568 Vigna mungo HOM05D004194 ORTHO05D007986 6.3e-30 136.3 100 67.0
VMungo1127G2164 Vigna mungo HOM05D004194 ORTHO05D007986 5.9e-28 129.8 100 66.0
Oeu028023.1 Olea europaea HOM05D004194 ORTHO05D033851 4.2e-26 123.6 109 58.7
BraA02t05060Z Brassica rapa HOM05D004194 ORTHO05D033851 5.5e-26 123.2 74 79.7
A02p00750 Brassica napus HOM05D004194 ORTHO05D005641 1.2e-25 122.1 80 77.5
Aqoxy84s004 Aquilegia oxysepala HOM05D004194 ORTHO05D077318 3.3e-23 114.0 308 28.9
BcaNung01906 Brassica carinata HOM05D004194 ORTHO05D005641 5.7e-15 86.7 54 68.5
Sed0027437 Sechium edule HOM05D004194 ORTHO05D033851 1.0e-11 75.9 41 85.4
Psat6g163800 Pisum sativum HOM05D004194 ORTHO05D037373 2.9e-11 74.3 43 76.7
Psat2g086120 Pisum sativum HOM05D004194 ORTHO05D037373 5.0e-11 73.6 47 70.2
RcHm_v2.0_Chr6g0244231 Rosa chinensis HOM05D004194 ORTHO05D341107 1.5e-10 72.0 63 61.9
Psat3g096720 Pisum sativum HOM05D004194 ORTHO05D324018 3.4e-07 60.8 35 77.1
Psat2g086160 Pisum sativum HOM05D004194 ORTHO05D037373 3.7e-06 57.4 51 58.8
Psat5g254960 Pisum sativum HOM05D015311 ORTHO05D321322 4.9e-06 57.0 38 71.1


User provided reference genes

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