Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C010971.2 Cucumis melo HOM05D001587 ORTHO05D008791 3.4e-203 711.4 366 100.0
CsaV3_2G029060 Cucumis sativus L. HOM05D001587 ORTHO05D008791 1.9e-193 679.1 366 95.9
Sed0025916 Sechium edule HOM05D001587 ORTHO05D008791 3.7e-173 611.7 368 85.6
ClCG08G014710 Citrullus lanatus HOM05D001587 ORTHO05D008791 2.5e-153 545.8 366 80.6
Manes.05G154300 Manihot esculenta HOM05D001587 ORTHO05D008791 3.6e-136 488.8 363 70.2
CANSAT35G0963 Cannabis sativa HOM05D001587 ORTHO05D008791 1.5e-134 483.4 371 69.8
Duzib041G0293 Durio zibethinus HOM05D001587 ORTHO05D008791 2.2e-133 479.6 365 69.0
Atru.chr13.396 Acer truncatum HOM05D001587 ORTHO05D008791 2.9e-133 479.2 366 71.6
TWI56G0852 Tripterygium wilfordii HOM05D001587 ORTHO05D008791 8.4e-133 477.6 362 69.9
Prupe.1G373400 Prunus persica HOM05D001587 ORTHO05D008791 1.9e-132 476.5 372 68.3
Thecc.08G034500 Theobroma cacao HOM05D001587 ORTHO05D008791 6.6e-130 468.0 364 69.0
Cpa.g.sc99.13 Carica papaya HOM05D001587 ORTHO05D008791 1.1e-129 467.2 364 67.6
Ciclev10001571m.g Citrus clementina HOM05D001587 ORTHO05D008791 1.1e-129 467.2 370 69.5
MD15G1021600 Malus domestica HOM05D001587 ORTHO05D008791 1.1e-129 467.2 373 68.4
Gorai.010G007600 Gossypium raimondii HOM05D001587 ORTHO05D008791 3.3e-129 465.7 353 69.4
COL.COLO4_26234 Corchorus olitorius HOM05D001587 ORTHO05D008791 8.1e-128 461.1 363 67.2
Gohir.D06G002700 Gossypium hirsutum HOM05D001587 ORTHO05D008791 1.1e-127 460.7 353 68.8
QL02p010191 Quercus lobata HOM05D001587 ORTHO05D008791 1.8e-127 459.9 364 69.8
GSVIVG01009782001 Vitis vinifera HOM05D001587 ORTHO05D008791 9.0e-127 457.6 362 68.5
RcHm_v2.0_Chr6g0301771 Rosa chinensis HOM05D001587 ORTHO05D008791 1.2e-126 457.2 357 69.2
Potri.005G232200 Populus trichocarpa HOM05D001587 ORTHO05D008791 2.6e-126 456.1 363 66.7
Hma1.2p1_1194F.1_g265710 Hydrangea macrophylla HOM05D001587 ORTHO05D008791 4.9e-125 451.8 352 67.0
FvH4_2g39240 Fragaria vesca HOM05D001587 ORTHO05D008791 5.4e-124 448.4 356 68.0
Eucgr.F01602 Eucalyptus grandis HOM05D001587 ORTHO05D008791 2.7e-123 446.0 303 75.6
Nn5g29720 Nelumbo nucifera HOM05D001587 ORTHO05D008791 1.0e-122 444.1 368 63.9
Hund17199 Selenicereus undatus HOM05D001587 ORTHO05D008791 2.3e-122 443.0 360 66.1
Sc15g0007180 Simmondsia chinensis HOM05D001587 ORTHO05D008791 3.0e-122 442.6 338 67.8
Lj1g0011689 Lotus japonicus HOM05D001587 ORTHO05D008791 8.7e-122 441.0 355 64.8
TPR.G12317 Trifolium pratense HOM05D001587 ORTHO05D008791 8.7e-122 441.0 365 64.9
Cc10_g02390 Coffea canephora HOM05D001587 ORTHO05D008791 1.9e-121 439.9 293 75.4
AT1G45110 Arabidopsis thaliana HOM05D001587 ORTHO05D008791 3.3e-121 439.1 337 67.4
BcaC08g42893 Brassica carinata HOM05D001587 ORTHO05D008791 4.3e-121 438.7 333 68.2
C06p01170 Brassica napus HOM05D001587 ORTHO05D008791 4.3e-121 438.7 333 68.2
A10p07100 Brassica napus HOM05D001587 ORTHO05D008791 5.6e-121 438.3 328 68.3
BraA10t42958Z Brassica rapa HOM05D001587 ORTHO05D008791 5.6e-121 438.3 328 68.3
Glyma.06G029000 Glycine max HOM05D001587 ORTHO05D008791 5.6e-121 438.3 363 63.4
CSS0021558 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D008791 7.4e-121 438.0 349 67.9
CSS0005575 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D008791 9.6e-121 437.6 352 67.6
BolC6t35253H Brassica oleracea HOM05D001587 ORTHO05D008791 1.3e-120 437.2 333 67.9
Lalb_Chr08g0245991 Lupinus albus HOM05D001587 ORTHO05D008791 1.6e-120 436.8 315 70.5
Phvul.009G060300 Phaseolus vulgaris HOM05D001587 ORTHO05D008791 1.6e-120 436.8 363 62.8
AUR62034528 Chenopodium quinoa HOM05D001587 ORTHO05D008791 2.1e-120 436.4 359 66.3
THA.LOC104813319 Tarenaya hassleriana HOM05D001587 ORTHO05D008791 3.6e-120 435.6 288 76.4
Peaxi162Scf00189g00920 Petunia axillaris HOM05D001587 ORTHO05D008791 4.8e-120 435.3 329 69.0
Migut.C00772 Erythranthe guttata HOM05D001587 ORTHO05D008791 1.1e-119 434.1 358 66.5
Aqoxy6G01203 Aquilegia oxysepala HOM05D001587 ORTHO05D008791 1.4e-119 433.7 367 64.6
Sabra05G0179100 Salix brachista HOM05D001587 ORTHO05D002654 1.4e-119 433.7 290 75.9
AL1G52680 Arabidopsis lyrata HOM05D001587 ORTHO05D008791 1.8e-119 433.3 318 69.2
PSO541G2666 Papaver somniferum HOM05D001587 ORTHO05D008791 1.8e-119 433.3 322 68.0
MSTRG.1247 Avicennia marina HOM05D001587 ORTHO05D008791 4.0e-119 432.2 360 66.7
Sp1g33880 Schrenkiella parvula HOM05D001587 ORTHO05D008791 5.3e-119 431.8 318 69.2
FAN27G1828 Fragaria x ananassa HOM05D001587 ORTHO05D008791 6.9e-119 431.4 376 63.6
CARHR036210 Cardamine hirsuta HOM05D001587 ORTHO05D008791 9.0e-119 431.0 336 65.8
PSO675G8960 Papaver somniferum HOM05D001587 ORTHO05D008791 1.2e-118 430.6 348 64.9
Lj4A33T83 Lonicera japonica HOM05D001587 ORTHO05D008791 2.0e-118 429.9 297 74.4
Lsat_1_v5_gn_1_17201 Lactuca sativa HOM05D001587 ORTHO05D008791 2.6e-118 429.5 314 72.6
Nitab4.5_0005779g0030 Nicotiana tabacum HOM05D001587 ORTHO05D008791 3.4e-118 429.1 287 74.9
Carub.0001s3551 Capsella rubella HOM05D001587 ORTHO05D008791 4.5e-118 428.7 318 67.6
Nitab4.5_0001861g0110 Nicotiana tabacum HOM05D001587 ORTHO05D008791 4.5e-118 428.7 372 63.4
MBI11_g07616_MAGBIO Magnolia biondii HOM05D001587 ORTHO05D008791 5.8e-118 428.3 310 71.0
EL10Ac1g00602 Beta vulgaris HOM05D001587 ORTHO05D008791 1.3e-117 427.2 366 63.7
HanXRQChr04g0099151 Helianthus annuus HOM05D001587 ORTHO05D008791 1.3e-117 427.2 288 75.7
CAN.G851.40 Capsicum annuum HOM05D001587 ORTHO05D008791 4.9e-117 425.2 291 72.9
Thhalv10011622m.g Eutrema salsugineum HOM05D001587 ORTHO05D008791 6.4e-117 424.9 312 69.9
BcaB07g33894 Brassica carinata HOM05D001587 ORTHO05D008791 8.4e-117 424.5 316 68.0
FAN15G0115 Fragaria x ananassa HOM05D001587 ORTHO05D008791 8.4e-117 424.5 395 60.8
Sopen04g034390 Solanum pennellii HOM05D001587 ORTHO05D008791 1.1e-116 424.1 330 67.3
Solyc04g080800.4 Solanum lycopersicum HOM05D001587 ORTHO05D008791 1.4e-116 423.7 337 66.5
PGSC0003DMG400003752 Solanum tuberosum HOM05D001587 ORTHO05D008791 1.4e-116 423.7 330 67.3
Ah.05g180890 Amaranthus hybridus HOM05D001587 ORTHO05D008791 1.9e-116 423.3 356 64.9
ECA247G3480 Erigeron canadensis HOM05D001587 ORTHO05D008791 4.2e-116 422.2 283 75.3
Aa31sc185G120 Aethionema arabicum HOM05D001587 ORTHO05D008791 9.3e-116 421.0 351 63.0
Gohir.A06G007600 Gossypium hirsutum HOM05D001587 ORTHO05D008791 9.3e-116 421.0 311 70.4
Rhsim07G0243600 Rhododendron simsii HOM05D001587 ORTHO05D008791 1.2e-115 420.6 282 75.9
Medtr3g112310 Medicago truncatula HOM05D001587 ORTHO05D008791 4.3e-113 412.1 334 64.1
CiPaw.07G156300 Carya illinoinensis HOM05D001587 ORTHO05D008791 1.2e-110 404.1 265 78.1
VMungo1309G0203 Vigna mungo HOM05D001587 ORTHO05D008791 4.5e-110 402.1 342 62.3
CDE04G1582 Ceratophyllum demersum HOM05D001587 ORTHO05D008791 7.6e-110 401.4 319 64.6
Os10g0414500 Oryza sativa ssp. japonica HOM05D001587 ORTHO05D008791 1.9e-108 396.7 315 65.1
FAN20G2929 Fragaria x ananassa HOM05D001587 ORTHO05D008791 4.2e-108 395.6 293 71.0
unitig_578.g16081 Utricularia gibba HOM05D001587 ORTHO05D008791 9.3e-108 394.4 331 65.3
Zm00001eb048090 Zea mays HOM05D001587 ORTHO05D008791 3.5e-107 392.5 278 70.9
TAR628G1547 Trochodendron aralioides HOM05D001587 ORTHO05D008791 4.6e-107 392.1 361 61.8
HPP92_024861 Vanilla planifolia HOM05D001587 ORTHO05D008791 2.8e-104 382.9 282 67.0
arahy.Tifrunner.gnm1.ann1.R2LLHR Arachis hypogaea HOM05D001587 ORTHO05D008791 6.9e-103 378.3 515 45.6
Haze_22561 Corylus avellana HOM05D001587 ORTHO05D008791 1.9e-100 370.2 420 53.3
Dinv39461 Davidia involucrata HOM05D001587 ORTHO05D008791 1.6e-99 367.1 276 69.6
vmacro04308 Vaccinium macrocarpon HOM05D001587 ORTHO05D008791 3.6e-99 365.9 551 42.5
arahy.Tifrunner.gnm1.ann1.F22IQH Arachis hypogaea HOM05D001587 ORTHO05D008791 5.1e-98 362.1 534 42.9
ATR0665G135 Amborella trichopoda HOM05D001587 ORTHO05D008791 6.3e-96 355.1 265 66.4
Actinidia15364 Actinidia chinensis HOM05D001587 ORTHO05D002654 2.4e-95 353.2 282 67.0
SalBow7G1285 Salvia bowleyana HOM05D001587 ORTHO05D008791 7.7e-94 348.2 290 65.9
Psat0s471g0160 Pisum sativum HOM05D001587 ORTHO05D008791 7.9e-91 338.2 234 70.5
SGA_v2.0_scaffold11G05847 Striga asiatica HOM05D001587 ORTHO05D008791 2.6e-89 333.2 278 64.7
Mapoly0042s0010 Marchantia polymorpha HOM05D001587 ORTHO05D008791 7.4e-89 331.6 278 60.4
AUR62014470 Chenopodium quinoa HOM05D001587 ORTHO05D008791 2.2e-88 330.1 228 73.7
Ca_15490_v3 Cicer arietinum L. HOM05D001587 ORTHO05D008791 9.1e-87 324.7 287 59.2
AagrBONN_evm.TU.Sc2ySwM_344.3744 Anthoceros agrestis HOM05D001587 ORTHO05D008791 1.4e-82 310.8 280 56.4
MD08G1024000 Malus domestica HOM05D001587 ORTHO05D008791 3.9e-82 309.3 402 50.0
Pp3c23_9730 Physcomitrium patens HOM05D001587 ORTHO05D008791 1.5e-81 307.4 294 54.8
vmacro07875 Vaccinium macrocarpon HOM05D001587 ORTHO05D008791 2.0e-81 307.0 184 81.5
SMO169G0295 Selaginella moellendorffii HOM05D001587 ORTHO05D008791 3.3e-81 306.2 287 55.7
Ca_29810_v3 Cicer arietinum L. HOM05D001587 ORTHO05D008791 4.7e-59 232.6 211 62.1
Manes.18G021412 Manihot esculenta HOM05D001587 ORTHO05D008791 1.0e-58 231.5 361 42.9
AagrBONN_evm.TU.Sc2ySwM_344.3737 Anthoceros agrestis HOM05D001587 ORTHO05D008791 3.0e-58 229.9 186 60.2
Glyma.04G029000 Glycine max HOM05D001587 ORTHO05D008791 1.5e-57 227.6 142 76.1
Dinv31791 Davidia involucrata HOM05D001587 ORTHO05D002654 5.7e-57 225.7 287 48.8
Cre13.g572000 Chlamydomonas reinhardtii HOM05D001587 ORTHO05D008791 8.3e-56 221.9 297 43.4
Psat3g187600 Pisum sativum HOM05D001587 ORTHO05D008791 1.2e-51 208.0 170 60.6
MCO14G527 Micromonas commoda HOM05D001587 ORTHO05D008791 2.9e-48 196.8 193 49.7
PRCOL_00005810 Prasinoderma coloniale HOM05D001587 ORTHO05D008791 6.4e-48 195.7 299 40.5
Psat3g187640 Pisum sativum HOM05D001587 ORTHO05D008791 1.7e-45 187.6 200 53.5
Psat5g097560 Pisum sativum HOM05D000922 ORTHO05D008791 8.3e-32 142.1 216 40.7
Psat5g097640 Pisum sativum HOM05D000922 ORTHO05D001851 1.1e-26 125.2 169 42.0
SEGI_08976 Sequoiadendron giganteum HOM05D001587 ORTHO05D008791 2.3e-26 124.0 77 77.9
SEGI_23158 Sequoiadendron giganteum HOM05D001587 ORTHO05D008791 5.2e-26 122.9 75 78.7
Hma1.2p1_1194F.1_g265720 Hydrangea macrophylla HOM05D001587 ORTHO05D014867 6.8e-26 122.5 99 66.7
AL1G52690 Arabidopsis lyrata HOM05D001587 ORTHO05D014867 1.5e-25 121.3 104 58.7
CARHR174630 Cardamine hirsuta HOM05D001587 ORTHO05D014867 1.2e-19 101.7 92 57.6
Ca_02074_v3 Cicer arietinum L. HOM05D001587 ORTHO05D008791 4.7e-19 99.8 131 50.4
CARHR293210 Cardamine hirsuta HOM05D001587 ORTHO05D008791 9.9e-17 92.0 54 81.5
SEGI_08644 Sequoiadendron giganteum HOM05D001587 ORTHO05D014867 1.7e-16 91.3 77 57.1
COL.COLO4_00685 Corchorus olitorius HOM05D030008 ORTHO05D034598 7.8e-14 82.4 169 30.2
Psat4g126360 Pisum sativum HOM05D001587 ORTHO05D037360 1.3e-13 81.6 77 55.8
Potri.002G030701 Populus trichocarpa HOM05D001587 ORTHO05D014867 3.9e-13 80.1 105 50.5
CSS0016398 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 1.3e-08 65.1 57 64.9
CSS0001111 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 1.7e-08 64.7 57 64.9
CSS0002416 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 1.7e-08 64.7 57 64.9
CSS0020626 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 1.7e-08 64.7 57 64.9
CSS0029664 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 1.7e-08 64.7 57 64.9
CSS0031048 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 1.7e-08 64.7 57 64.9
CSS0048350 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 1.7e-08 64.7 57 64.9
CSS0046073 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 2.9e-08 63.9 57 64.9
Sabra02G0024500 Salix brachista HOM05D001587 ORTHO05D037360 5.4e-07 59.7 38 68.4


User provided reference genes

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