Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C010306.2 Cucumis melo HOM05D000483 ORTHO05D000158 2.9e-41 171.4 84 100.0
ClCG08G011740 Citrullus lanatus HOM05D000483 ORTHO05D000158 8.9e-22 106.7 69 78.3
CsaV3_2G030360 Cucumis sativus L. HOM05D000483 ORTHO05D000158 7.5e-21 103.6 69 75.4
Sed0017995 Sechium edule HOM05D000483 ORTHO05D000158 7.8e-18 93.6 69 68.1
Medtr5g065980 Medicago truncatula HOM05D000483 ORTHO05D000158 1.2e-15 86.3 70 61.4
TAR628G0502 Trochodendron aralioides HOM05D000483 ORTHO05D000158 1.6e-15 85.9 69 59.4
Duzib093G0554 Durio zibethinus HOM05D000483 ORTHO05D000158 2.1e-15 85.5 71 60.6
Glyma.14G181000 Glycine max HOM05D000483 ORTHO05D000158 1.1e-14 83.2 70 61.4
arahy.Tifrunner.gnm1.ann1.AGS0VV Arachis hypogaea HOM05D000483 ORTHO05D000158 1.4e-14 82.8 70 61.4
arahy.Tifrunner.gnm1.ann1.M8HDEY Arachis hypogaea HOM05D000483 ORTHO05D000158 1.4e-14 82.8 70 61.4
TPR.G16025 Trifolium pratense HOM05D000483 ORTHO05D000158 2.4e-14 82.0 70 58.6
VMungo0647G2464 Vigna mungo HOM05D000483 ORTHO05D000158 2.4e-14 82.0 69 60.9
Manes.18G059911 Manihot esculenta HOM05D000483 ORTHO05D000158 3.1e-14 81.6 71 56.3
MD15G1383800 Malus domestica HOM05D000483 ORTHO05D000158 4.0e-14 81.3 71 62.0
Nn5g29915 Nelumbo nucifera HOM05D000483 ORTHO05D000158 4.0e-14 81.3 69 58.0
Eucgr.F00412 Eucalyptus grandis HOM05D000483 ORTHO05D000158 5.2e-14 80.9 69 59.4
QL09p017542 Quercus lobata HOM05D000483 ORTHO05D000158 5.2e-14 80.9 70 61.4
Sabra02G0082200 Salix brachista HOM05D000483 ORTHO05D000158 5.2e-14 80.9 71 60.6
GSVIVG01009157001 Vitis vinifera HOM05D000483 ORTHO05D000158 6.8e-14 80.5 69 58.0
CSS0003758 Camellia sinensis var. sinensis HOM05D000483 ORTHO05D000158 8.9e-14 80.1 69 58.0
Phvul.008G180800 Phaseolus vulgaris HOM05D000483 ORTHO05D000158 8.9e-14 80.1 69 60.9
Potri.002G104700 Populus trichocarpa HOM05D000483 ORTHO05D000158 8.9e-14 80.1 71 59.2
LjContig00408g0017560 Lotus japonicus HOM05D000483 ORTHO05D000158 1.2e-13 79.7 70 58.6
Thecc.08G069300 Theobroma cacao HOM05D000483 ORTHO05D000158 1.2e-13 79.7 71 60.6
Aa31LG1G5250 Aethionema arabicum HOM05D000483 ORTHO05D000158 1.5e-13 79.3 68 60.3
CARHR009710 Cardamine hirsuta HOM05D000483 ORTHO05D000158 1.5e-13 79.3 68 61.8
Psat2g068000 Pisum sativum HOM05D000483 ORTHO05D000158 1.5e-13 79.3 70 57.1
Prupe.1G529900 Prunus persica HOM05D000483 ORTHO05D000158 1.5e-13 79.3 71 60.6
CiPaw.07G166800 Carya illinoinensis HOM05D000483 ORTHO05D000158 2.6e-13 78.6 71 59.2
COL.COLO4_35215 Corchorus olitorius HOM05D000483 ORTHO05D000158 2.6e-13 78.6 68 58.8
Glyma.02G213100 Glycine max HOM05D000483 ORTHO05D000158 2.6e-13 78.6 70 57.1
AL1G20290 Arabidopsis lyrata HOM05D000483 ORTHO05D000158 4.4e-13 77.8 68 60.3
AT1G09740 Arabidopsis thaliana HOM05D000483 ORTHO05D000158 4.4e-13 77.8 68 60.3
Sp1g08330 Schrenkiella parvula HOM05D000483 ORTHO05D000158 4.4e-13 77.8 68 60.3
Os02g0760500 Oryza sativa ssp. japonica HOM05D000483 ORTHO05D000158 9.9e-13 76.6 69 56.5
Ciclev10030411m.g Citrus clementina HOM05D000483 ORTHO05D000158 1.3e-12 76.3 68 58.8
Atru.chr13.1029 Acer truncatum HOM05D000483 ORTHO05D000158 1.7e-12 75.9 70 55.7
Carub.0001s0908 Capsella rubella HOM05D000483 ORTHO05D000158 1.7e-12 75.9 68 58.8
Thhalv10008924m.g Eutrema salsugineum HOM05D000483 ORTHO05D000158 1.7e-12 75.9 68 58.8
Peaxi162Scf00281g00016 Petunia axillaris HOM05D000483 ORTHO05D000158 1.7e-12 75.9 71 52.1
BraA06t23853Z Brassica rapa HOM05D000483 ORTHO05D000158 2.2e-12 75.5 68 58.8
Cc10_g15780 Coffea canephora HOM05D000483 ORTHO05D000158 2.2e-12 75.5 69 56.5
Nitab4.5_0000131g0380 Nicotiana tabacum HOM05D000483 ORTHO05D000158 2.2e-12 75.5 71 53.5
Nitab4.5_0003525g0050 Nicotiana tabacum HOM05D000483 ORTHO05D000158 2.2e-12 75.5 71 53.5
Gohir.A06G032620 Gossypium hirsutum HOM05D000483 ORTHO05D000158 2.9e-12 75.1 70 54.3
Gohir.D06G032200 Gossypium hirsutum HOM05D000483 ORTHO05D000158 2.9e-12 75.1 70 54.3
Gorai.010G035500 Gossypium raimondii HOM05D000483 ORTHO05D000158 3.8e-12 74.7 70 54.3
Oeu012752.2 Olea europaea HOM05D000483 ORTHO05D000158 3.8e-12 74.7 68 57.4
THA.LOC104816800 Tarenaya hassleriana HOM05D000483 ORTHO05D000158 3.8e-12 74.7 68 58.8
A06p06420 Brassica napus HOM05D000483 ORTHO05D000158 4.9e-12 74.3 68 57.4
C05p07820 Brassica napus HOM05D000483 ORTHO05D000158 4.9e-12 74.3 68 57.4
BolC5t29533H Brassica oleracea HOM05D000483 ORTHO05D000158 4.9e-12 74.3 68 57.4
CANSAT25G1929 Cannabis sativa HOM05D000483 ORTHO05D000158 4.9e-12 74.3 73 53.4
PGR042G2427 Punica granatum HOM05D000483 ORTHO05D000158 4.9e-12 74.3 69 56.5
Actinidia29619 Actinidia chinensis HOM05D000483 ORTHO05D000158 6.4e-12 73.9 69 55.1
Cfa013690 Carpinus fangiana HOM05D000483 ORTHO05D000158 8.4e-12 73.6 70 58.6
HanXRQChr05g0163431 Helianthus annuus HOM05D000483 ORTHO05D000158 1.1e-11 73.2 69 55.1
Rhsim07G0211300 Rhododendron simsii HOM05D000483 ORTHO05D000158 1.1e-11 73.2 74 54.1
RcHm_v2.0_Chr7g0236901 Rosa chinensis HOM05D000483 ORTHO05D000158 1.1e-11 73.2 69 60.9
FvH4_5g35520 Fragaria vesca HOM05D000483 ORTHO05D000158 1.4e-11 72.8 70 58.6
HPP92_016736 Vanilla planifolia HOM05D000483 ORTHO05D000158 1.4e-11 72.8 72 54.2
Lalb_Chr04g0252911 Lupinus albus HOM05D000483 ORTHO05D000158 1.9e-11 72.4 70 55.7
BcaNung06982 Brassica carinata HOM05D000483 ORTHO05D000158 2.4e-11 72.0 68 55.9
A08p34380 Brassica napus HOM05D000483 ORTHO05D000158 2.4e-11 72.0 68 55.9
C08p13150 Brassica napus HOM05D000483 ORTHO05D000158 2.4e-11 72.0 68 55.9
BolC8t48943H Brassica oleracea HOM05D000483 ORTHO05D000158 2.4e-11 72.0 68 55.9
BraA08t35350Z Brassica rapa HOM05D000483 ORTHO05D000158 2.4e-11 72.0 68 55.9
CDE03G0483 Ceratophyllum demersum HOM05D000483 ORTHO05D000158 2.4e-11 72.0 68 50.0
PSO017G1275 Papaver somniferum HOM05D000483 ORTHO05D000158 2.4e-11 72.0 74 50.0
PSO170G4415 Papaver somniferum HOM05D000483 ORTHO05D000158 2.4e-11 72.0 74 50.0
Hund16864 Selenicereus undatus HOM05D000483 ORTHO05D000158 2.4e-11 72.0 69 56.5
Lj4A89G41 Lonicera japonica HOM05D000483 ORTHO05D000158 3.2e-11 71.6 69 55.1
CAN.G475.44 Capsicum annuum HOM05D000483 ORTHO05D000158 5.4e-11 70.9 72 51.4
DCAR_020017 Daucus carota HOM05D000483 ORTHO05D000158 5.4e-11 70.9 69 53.6
PGSC0003DMG400012895 Solanum tuberosum HOM05D000483 ORTHO05D000158 5.4e-11 70.9 71 49.3
CiPaw.06G032200 Carya illinoinensis HOM05D000483 ORTHO05D000158 1.2e-10 69.7 71 52.1
FAN18G1753 Fragaria x ananassa HOM05D000483 ORTHO05D000158 1.6e-10 69.3 70 57.1
Solyc04g076200.3 Solanum lycopersicum HOM05D000483 ORTHO05D000158 1.6e-10 69.3 71 49.3
ECA246G4436 Erigeron canadensis HOM05D000483 ORTHO05D000158 2.7e-10 68.6 69 50.7
Hma1.2p1_0010F.1_g006860 Hydrangea macrophylla HOM05D000483 ORTHO05D000158 3.5e-10 68.2 72 55.6
Lsat_1_v5_gn_6_106280 Lactuca sativa HOM05D000483 ORTHO05D000158 4.6e-10 67.8 69 50.7
Sopen04g030000 Solanum pennellii HOM05D000483 ORTHO05D000158 4.6e-10 67.8 71 49.3
MBI02_g32613_MAGBIO Magnolia biondii HOM05D000483 ORTHO05D000158 7.8e-10 67.0 53 56.6
ATR0022G067 Amborella trichopoda HOM05D000483 ORTHO05D000158 1.7e-09 65.9 72 51.4
SEGI_12524 Sequoiadendron giganteum HOM05D000483 ORTHO05D000158 1.7e-09 65.9 70 50.0
Sc01g0001110 Simmondsia chinensis HOM05D000483 ORTHO05D000158 1.7e-09 65.9 70 52.9
Hund27013 Selenicereus undatus HOM05D000483 ORTHO05D000158 2.3e-09 65.5 69 50.7
Peaxi162Scf00210g00510 Petunia axillaris HOM05D000483 ORTHO05D000158 3.0e-09 65.1 67 50.7
Ah.05g170770 Amaranthus hybridus HOM05D000483 ORTHO05D000158 6.6e-09 63.9 69 49.3
vmacro04662 Vaccinium macrocarpon HOM05D000483 ORTHO05D000158 8.7e-09 63.5 53 58.5
Zm00001eb255610 Zea mays HOM05D000483 ORTHO05D000158 1.5e-08 62.8 53 58.5
TWI12G1139 Tripterygium wilfordii HOM05D000483 ORTHO05D000158 1.9e-08 62.4 71 50.7
FAN08G2412 Fragaria x ananassa HOM05D000483 ORTHO05D000158 4.3e-08 61.2 70 54.3
Ciclev10003311m.g Citrus clementina HOM05D000483 ORTHO05D000158 9.6e-08 60.1 62 53.2
EL10Ac1g01068 Beta vulgaris HOM05D000483 ORTHO05D000158 1.2e-07 59.7 67 49.3
AUR62019037 Chenopodium quinoa HOM05D000483 ORTHO05D000158 1.2e-07 59.7 69 47.8
AUR62027874 Chenopodium quinoa HOM05D000483 ORTHO05D000158 1.2e-07 59.7 69 47.8
FAN04G2089 Fragaria x ananassa HOM05D002435 ORTHO05D002550 3.6e-07 58.2 70 52.9
HPP92_016751 Vanilla planifolia HOM05D000483 ORTHO05D000158 9.0e-06 53.5 44 59.1


User provided reference genes

Program Settings