Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C010103.2 Cucumis melo HOM05D004333 ORTHO05D005363 0.0e+00 4729.1 2436 100.0
CsaV3_1G044960 Cucumis sativus L. HOM05D004333 ORTHO05D005363 0.0e+00 4387.8 2406 94.0
ClCG03G011440 Citrullus lanatus HOM05D004333 ORTHO05D005363 0.0e+00 4121.6 2417 88.2
Sed0018682 Sechium edule HOM05D004333 ORTHO05D005363 0.0e+00 3736.0 2415 80.1
QL11p010725 Quercus lobata HOM05D004333 ORTHO05D005363 0.0e+00 2756.5 2440 59.4
Haze_00260 Corylus avellana HOM05D004333 ORTHO05D005363 0.0e+00 2755.7 2464 59.1
Cfa016195 Carpinus fangiana HOM05D004333 ORTHO05D005363 0.0e+00 2739.9 2404 60.0
CiPaw.05G200800 Carya illinoinensis HOM05D004333 ORTHO05D005363 0.0e+00 2718.7 2445 58.3
Manes.01G037200 Manihot esculenta HOM05D004333 ORTHO05D005363 0.0e+00 2684.1 2430 57.9
RcHm_v2.0_Chr1g0381961 Rosa chinensis HOM05D004333 ORTHO05D005363 0.0e+00 2678.3 2432 57.6
Prupe.2G315300 Prunus persica HOM05D004333 ORTHO05D005363 0.0e+00 2673.3 2436 57.7
Thecc.03G204400 Theobroma cacao HOM05D004333 ORTHO05D005363 0.0e+00 2656.7 2437 57.2
MD07G1295800 Malus domestica HOM05D004333 ORTHO05D005363 0.0e+00 2645.2 2429 57.3
FvH4_7g32380 Fragaria vesca HOM05D004333 ORTHO05D005363 0.0e+00 2642.1 2434 56.4
FAN06G4186 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2637.8 2468 55.8
FAN03G1314 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2628.6 2468 55.6
FAN10G1078 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2627.0 2469 55.5
TAR633G0098 Trochodendron aralioides HOM05D004333 ORTHO05D005363 0.0e+00 2620.9 2440 56.1
Dinv32109 Davidia involucrata HOM05D004333 ORTHO05D005363 0.0e+00 2619.0 2444 56.2
FAN10G0319 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2615.1 2469 55.4
Gohir.D12G248500 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 2605.9 2438 56.3
Gorai.008G266500 Gossypium raimondii HOM05D004333 ORTHO05D005363 0.0e+00 2605.1 2438 56.3
Gohir.A12G247800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 2582.0 2452 55.8
Potri.012G020000 Populus trichocarpa HOM05D004333 ORTHO05D005363 0.0e+00 2570.8 2435 55.7
MD01G1225300 Malus domestica HOM05D004333 ORTHO05D005363 0.0e+00 2569.3 2423 56.3
TWI39G1232 Tripterygium wilfordii HOM05D004333 ORTHO05D005363 0.0e+00 2567.7 2425 55.7
Sabra12G0012900 Salix brachista HOM05D004333 ORTHO05D005363 0.0e+00 2563.9 2441 55.3
Potri.015G008500 Populus trichocarpa HOM05D004333 ORTHO05D005363 0.0e+00 2560.0 2435 55.6
Sabra15G0006500 Salix brachista HOM05D004333 ORTHO05D005363 0.0e+00 2558.9 2450 55.4
CANSAT21G1061 Cannabis sativa HOM05D004333 ORTHO05D005363 0.0e+00 2551.9 2428 54.8
Ciclev10000006m.g Citrus clementina HOM05D004333 ORTHO05D005363 0.0e+00 2536.1 2439 55.7
Ca_16734_v3 Cicer arietinum L. HOM05D004333 ORTHO05D005363 0.0e+00 2487.2 2421 54.1
Lj1C1024G7 Lonicera japonica HOM05D004333 ORTHO05D005363 0.0e+00 2481.1 2477 53.6
FAN01G1860 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2476.4 2467 53.5
TPR.G33633 Trifolium pratense HOM05D004333 ORTHO05D005363 0.0e+00 2472.6 2424 54.0
FAN20G1934 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2470.7 2465 53.4
Glyma.04G232700 Glycine max HOM05D004333 ORTHO05D005363 0.0e+00 2465.6 2428 54.3
Medtr3g091940 Medicago truncatula HOM05D004333 ORTHO05D005363 0.0e+00 2457.6 2421 53.6
Lj1g0003347 Lotus japonicus HOM05D004333 ORTHO05D005363 0.0e+00 2457.2 2420 53.8
arahy.Tifrunner.gnm1.ann1.F5KWPZ Arachis hypogaea HOM05D004333 ORTHO05D005363 0.0e+00 2444.5 2432 53.4
arahy.Tifrunner.gnm1.ann1.SMAV3X Arachis hypogaea HOM05D004333 ORTHO05D005363 0.0e+00 2441.4 2467 52.8
Actinidia08674 Actinidia chinensis HOM05D004333 ORTHO05D005363 0.0e+00 2436.4 2436 53.0
Glyma.06G132300 Glycine max HOM05D004333 ORTHO05D005363 0.0e+00 2435.6 2416 53.4
Lalb_Chr08g0240011 Lupinus albus HOM05D004333 ORTHO05D005363 0.0e+00 2434.8 2430 53.4
Phvul.009G048100 Phaseolus vulgaris HOM05D004333 ORTHO05D005363 0.0e+00 2431.8 2420 53.3
Nn7g38041 Nelumbo nucifera HOM05D004333 ORTHO05D005363 0.0e+00 2413.3 2436 52.3
vmacro06413 Vaccinium macrocarpon HOM05D004333 ORTHO05D005363 0.0e+00 2377.4 2367 53.0
Atru.chr12.2311 Acer truncatum HOM05D004333 ORTHO05D005363 0.0e+00 2355.5 2107 57.9
Rhsim03G0212200 Rhododendron simsii HOM05D004333 ORTHO05D005363 0.0e+00 2347.8 2398 52.4
GSVIVG01038603001 Vitis vinifera HOM05D004333 ORTHO05D005363 0.0e+00 2345.9 2455 52.1
Sopen03g022440 Solanum pennellii HOM05D004333 ORTHO05D005363 0.0e+00 2327.7 2439 50.8
PGR142G3828 Punica granatum HOM05D004333 ORTHO05D005363 0.0e+00 2321.2 2429 51.3
DCAR_020346 Daucus carota HOM05D004333 ORTHO05D005363 0.0e+00 2290.4 2398 50.9
Nitab4.5_0010367g0010 Nicotiana tabacum HOM05D004333 ORTHO05D005363 0.0e+00 2286.5 2395 50.5
Hund21026 Selenicereus undatus HOM05D004333 ORTHO05D005363 0.0e+00 2284.2 2431 51.4
Nitab4.5_0008197g0020 Nicotiana tabacum HOM05D004333 ORTHO05D005363 0.0e+00 2282.7 2441 50.3
CARHR189090 Cardamine hirsuta HOM05D004333 ORTHO05D005363 0.0e+00 2281.9 2430 51.1
Cc02_g01170 Coffea canephora HOM05D004333 ORTHO05D005363 0.0e+00 2276.9 2426 50.5
AL6G35880 Arabidopsis lyrata HOM05D004333 ORTHO05D005363 0.0e+00 2276.1 2429 50.8
Peaxi162Scf00740g00426 Petunia axillaris HOM05D004333 ORTHO05D005363 0.0e+00 2267.7 2433 49.7
Migut.F00177 Erythranthe guttata HOM05D004333 ORTHO05D005363 0.0e+00 2262.3 2430 49.6
Sp2g22970 Schrenkiella parvula HOM05D004333 ORTHO05D005363 0.0e+00 2257.3 2435 50.9
AT5G24350 Arabidopsis thaliana HOM05D004333 ORTHO05D005363 0.0e+00 2254.6 2428 50.3
A06p35170 Brassica napus HOM05D004333 ORTHO05D005363 0.0e+00 2254.2 2434 51.1
Thhalv10003502m.g Eutrema salsugineum HOM05D004333 ORTHO05D005363 0.0e+00 2252.2 2431 51.1
Aa31LG11G3630 Aethionema arabicum HOM05D004333 ORTHO05D005363 0.0e+00 2248.0 2425 50.6
C07p43390 Brassica napus HOM05D004333 ORTHO05D005363 0.0e+00 2243.8 2433 50.2
THA.LOC104798907 Tarenaya hassleriana HOM05D004333 ORTHO05D005363 0.0e+00 2240.7 2432 50.7
BraA06t26437Z Brassica rapa HOM05D004333 ORTHO05D005363 0.0e+00 2234.5 2457 50.3
Aqoxy5G04259 Aquilegia oxysepala HOM05D004333 ORTHO05D005363 0.0e+00 2226.4 2444 49.1
MSTRG.27005 Avicennia marina HOM05D004333 ORTHO05D005363 0.0e+00 2224.5 2428 49.7
MBI06_g06689_MAGBIO Magnolia biondii HOM05D004333 ORTHO05D005363 0.0e+00 2224.5 2469 49.9
BolC7t44866H Brassica oleracea HOM05D004333 ORTHO05D005363 0.0e+00 2224.1 2460 49.6
Duzib068G0008 Durio zibethinus HOM05D004333 ORTHO05D005363 0.0e+00 2213.0 2433 50.8
SGA_v2.0_scaffold18G08437 Striga asiatica HOM05D004333 ORTHO05D005363 0.0e+00 2211.0 2451 49.3
EL10Ac9g21652 Beta vulgaris HOM05D004333 ORTHO05D005363 0.0e+00 2209.9 2434 48.8
BcaNung01227 Brassica carinata HOM05D004333 ORTHO05D005363 0.0e+00 2195.2 2390 50.2
Sc19g0000760 Simmondsia chinensis HOM05D004333 ORTHO05D005363 0.0e+00 2194.9 2420 49.5
PSO063G3257 Papaver somniferum HOM05D004333 ORTHO05D005363 0.0e+00 2177.1 2444 49.3
AUR62010404 Chenopodium quinoa HOM05D004333 ORTHO05D005363 0.0e+00 2168.7 2435 48.7
AUR62016813 Chenopodium quinoa HOM05D004333 ORTHO05D005363 0.0e+00 2144.8 2430 48.2
COL.COLO4_16822 Corchorus olitorius HOM05D004333 ORTHO05D005363 0.0e+00 2130.1 2431 49.7
HanXRQChr04g0107121 Helianthus annuus HOM05D004333 ORTHO05D005363 0.0e+00 2117.4 2435 47.6
Lsat_1_v5_gn_9_49400 Lactuca sativa HOM05D004333 ORTHO05D005363 0.0e+00 2113.6 2426 47.5
Ah.01g018970 Amaranthus hybridus HOM05D004333 ORTHO05D005363 0.0e+00 2085.1 2428 46.6
CSS0015753 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 0.0e+00 2010.3 2073 52.6
CSS0025528 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 0.0e+00 2002.6 2073 52.4
Psat5g074840 Pisum sativum HOM05D004333 ORTHO05D005363 0.0e+00 1936.0 1843 54.7
CDE02G3740 Ceratophyllum demersum HOM05D004333 ORTHO05D005363 0.0e+00 1931.8 2440 44.3
ECA232G2446 Erigeron canadensis HOM05D004333 ORTHO05D005363 0.0e+00 1887.1 2244 46.3
ATR0697G293 Amborella trichopoda HOM05D004333 ORTHO05D005363 0.0e+00 1829.7 2406 43.1
Zm00001eb359130 Zea mays HOM05D004333 ORTHO05D005363 0.0e+00 1702.2 2498 40.6
Gorai.006G202800 Gossypium raimondii HOM05D004333 ORTHO05D005363 0.0e+00 1626.7 1460 57.4
Gohir.A09G185800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 1605.1 1460 57.1
unitig_0.g2452 Utricularia gibba HOM05D004333 ORTHO05D005363 0.0e+00 1604.3 2319 40.1
VMungo1309G3147 Vigna mungo HOM05D004333 ORTHO05D005363 0.0e+00 1560.0 1553 54.4
Carub.0006s2218 Capsella rubella HOM05D004333 ORTHO05D005363 0.0e+00 1521.9 1650 51.5
Cpa.g.c29767.1 Carica papaya HOM05D004333 ORTHO05D005363 0.0e+00 1395.6 1383 54.4
Solyc03g082680.4 Solanum lycopersicum HOM05D004333 ORTHO05D005363 0.0e+00 1324.3 1459 49.3
Gohir.D09G180800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 1273.5 1098 59.4
CAN.G481.60 Capsicum annuum HOM05D004333 ORTHO05D005363 0.0e+00 1188.3 1377 47.2
HPP92_002817 Vanilla planifolia HOM05D004333 ORTHO05D005363 0.0e+00 1177.2 1604 42.1
Eucgr.D00250 Eucalyptus grandis HOM05D004333 ORTHO05D005363 0.0e+00 1147.1 1152 52.2
CAN.G481.57 Capsicum annuum HOM05D004333 ORTHO05D005363 0.0e+00 1115.9 1417 44.9
SalBow4G2088 Salvia bowleyana HOM05D004333 ORTHO05D005363 1.5e-310 1070.8 1043 54.8
CAN.G481.56 Capsicum annuum HOM05D004333 ORTHO05D005363 3.7e-285 986.5 1006 51.2
Aa31LG11G3970 Aethionema arabicum HOM05D004333 ORTHO05D005363 1.3e-282 978.0 1041 50.0
SHI08278 Sapria himalayana HOM05D004333 ORTHO05D005363 1.2e-264 918.3 1391 41.3
AagrBONN_evm.TU.Sc2ySwM_362.1567 Anthoceros agrestis HOM05D004333 ORTHO05D005363 2.0e-259 901.0 2561 28.7
VMungo1309G1648 Vigna mungo HOM05D004333 ORTHO05D005363 1.2e-243 848.6 905 49.6
Mapoly0143s0007 Marchantia polymorpha HOM05D004333 ORTHO05D005363 1.9e-233 814.7 2098 30.4
Pp3c1_3140 Physcomitrium patens HOM05D004333 ORTHO05D005363 1.2e-222 778.9 2142 29.1
Psat0s2221g0080 Pisum sativum HOM05D004333 ORTHO05D005363 5.6e-217 760.0 854 47.5
SEGI_24760 Sequoiadendron giganteum HOM05D004333 ORTHO05D005363 2.8e-208 731.1 1485 34.5
Carub.0006s2217 Capsella rubella HOM05D004333 ORTHO05D005363 6.9e-207 726.5 768 49.3
CBR_g48777 Chara braunii HOM05D004333 ORTHO05D005363 1.3e-184 652.5 2345 25.2
Eucgr.D00251 Eucalyptus grandis HOM05D004333 ORTHO05D005363 8.2e-184 649.8 784 46.2
SMO356G0059 Selaginella moellendorffii HOM05D004333 ORTHO05D005363 8.0e-171 606.7 813 40.7
Oeu001936.1 Olea europaea HOM05D004333 ORTHO05D005363 3.3e-148 531.6 594 46.1
Cpa.g.c45444 Carica papaya HOM05D004333 ORTHO05D005363 1.5e-108 399.8 324 59.3
CSS0044449 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 3.0e-101 375.6 470 43.2
CSS0041108 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 1.6e-99 369.8 470 43.4
Actinidia34248 Actinidia chinensis HOM05D004333 ORTHO05D005363 7.6e-97 360.9 460 43.0
Psat1g135480 Pisum sativum HOM05D004333 ORTHO05D005363 1.8e-93 349.7 259 67.2
SHI08285 Sapria himalayana HOM05D004333 ORTHO05D000009 1.8e-90 339.7 331 50.5
SEGI_07013 Sequoiadendron giganteum HOM05D004333 ORTHO05D000001 3.4e-81 308.9 430 38.8
CAN.G481.55 Capsicum annuum HOM05D004333 ORTHO05D005363 7.9e-78 297.7 365 41.9
SHI08286 Sapria himalayana HOM05D004333 ORTHO05D005363 2.7e-70 272.7 339 42.2
SEGI_10720 Sequoiadendron giganteum HOM05D004333 ORTHO05D005363 2.3e-69 269.6 477 34.6
CAN.G481.58 Capsicum annuum HOM05D004333 ORTHO05D005363 9.1e-66 257.7 203 62.6
Actinidia34249 Actinidia chinensis HOM05D004333 ORTHO05D005363 1.0e-64 254.2 318 45.6
Psat0s3076g0080 Pisum sativum HOM05D004333 ORTHO05D001713 8.5e-56 224.6 182 64.8
Os12g0233600 Oryza sativa ssp. japonica HOM05D004333 ORTHO05D005363 2.7e-46 193.0 435 31.5
CAN.G481.59 Capsicum annuum HOM05D004333 ORTHO05D005363 1.7e-43 183.7 122 76.2
Psat4g066600 Pisum sativum HOM05D004333 ORTHO05D005363 1.1e-42 181.0 277 41.9
Lj4g0026522 Lotus japonicus HOM05D004333 ORTHO05D005363 2.0e-41 176.8 131 67.2
Nitab4.5_0004178g0040 Nicotiana tabacum HOM05D004333 ORTHO05D005363 4.5e-41 175.6 186 48.4
Cre09.g415400 Chlamydomonas reinhardtii HOM05D004333 ORTHO05D005363 1.3e-40 174.1 803 24.2
SHI08279 Sapria himalayana HOM05D004333 ORTHO05D005363 2.7e-38 166.4 123 66.7
Psat1g100720 Pisum sativum HOM05D004333 ORTHO05D005363 3.6e-38 166.0 313 35.1
Nitab4.5_0004178g0060 Nicotiana tabacum HOM05D004333 ORTHO05D005363 2.3e-37 163.3 333 35.1
Nitab4.5_0004178g0050 Nicotiana tabacum HOM05D004333 ORTHO05D005363 1.2e-36 161.0 257 39.3
CAN.G3762.1 Capsicum annuum HOM05D004333 ORTHO05D005363 1.8e-34 153.7 213 37.1
arahy.Tifrunner.gnm1.ann1.7A8JPA Arachis hypogaea HOM05D004333 ORTHO05D005363 2.9e-32 146.4 130 61.5
Oeu049088.1 Olea europaea HOM05D004333 ORTHO05D005363 8.3e-27 128.3 91 67.0
MCO09G360 Micromonas commoda HOM05D004333 ORTHO05D005363 2.4e-26 126.7 465 25.2
Nitab4.5_0004178g0010 Nicotiana tabacum HOM05D004333 ORTHO05D005363 4.1e-26 125.9 278 29.5
Psat1g176920 Pisum sativum HOM05D004333 ORTHO05D005363 3.5e-25 122.9 110 56.4
Oeu001937.1 Olea europaea HOM05D004333 ORTHO05D005363 1.1e-23 117.9 195 39.0
Psat5g193520 Pisum sativum HOM05D001137 ORTHO05D001967 1.5e-23 117.5 128 45.3
SHI08287 Sapria himalayana HOM05D004333 ORTHO05D005363 2.3e-21 110.2 145 43.4
BcaNung02039 Brassica carinata HOM05D004333 ORTHO05D005363 2.0e-20 107.1 325 31.1
Psat6g091080 Pisum sativum HOM05D004333 ORTHO05D005363 3.4e-20 106.3 131 44.3
Psat3g000280 Pisum sativum HOM05D002984 ORTHO05D005363 1.6e-17 97.4 106 45.3
Nitab4.5_0004178g0020 Nicotiana tabacum HOM05D004333 ORTHO05D005363 2.7e-17 96.7 192 37.0
Psat6g175840 Pisum sativum HOM05D006947 ORTHO05D005363 7.8e-17 95.1 119 43.7
Psat4g128000 Pisum sativum HOM05D002621 ORTHO05D004807 1.0e-16 94.7 76 55.3
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 1.3e-16 94.4 73 61.6
A02p40370 Brassica napus HOM05D004333 ORTHO05D005363 4.7e-14 85.9 99 47.5
arahy.Tifrunner.gnm1.ann1.UK8Y7I Arachis hypogaea HOM05D004333 ORTHO05D005363 1.4e-10 74.3 128 36.7
ATR0697G222 Amborella trichopoda HOM05D004333 ORTHO05D038300 5.4e-10 72.4 96 40.6
Psat0s2975g0120 Pisum sativum HOM05D000832 ORTHO05D013522 4.6e-09 69.3 74 48.6
SHI08288 Sapria himalayana HOM05D003057 ORTHO05D003904 1.0e-08 68.2 56 55.4
COL.COLO4_19568 Corchorus olitorius HOM05D005366 ORTHO05D006323 1.2e-06 61.2 41 73.2
BcaC03g17980 Brassica carinata HOM05D004333 ORTHO05D005363 1.6e-06 60.8 69 46.4


User provided reference genes

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