Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C009992.2 Cucumis melo HOM05D006474 ORTHO05D007994 6.2e-257 890.2 418 100.0
CsaV3_1G043980 Cucumis sativus L. HOM05D006474 ORTHO05D007994 8.7e-243 843.2 418 94.5
ClCG03G011950 Citrullus lanatus HOM05D006474 ORTHO05D007994 1.9e-234 815.5 418 90.2
Sed0005056 Sechium edule HOM05D006474 ORTHO05D007994 2.1e-196 689.1 420 79.0
Sed0007392 Sechium edule HOM05D006474 ORTHO05D007994 4.4e-194 681.4 419 75.9
CiPaw.07G199100 Carya illinoinensis HOM05D006474 ORTHO05D007994 3.7e-177 625.2 425 68.0
TAR383G1087 Trochodendron aralioides HOM05D006474 ORTHO05D007994 4.0e-171 605.1 403 69.2
GSVIVG01029282001 Vitis vinifera HOM05D006474 ORTHO05D007994 5.2e-171 604.7 371 74.7
PGR142G0270 Punica granatum HOM05D006474 ORTHO05D007994 6.8e-171 604.4 405 69.6
Thecc.04G204000 Theobroma cacao HOM05D006474 ORTHO05D007994 1.7e-169 599.7 400 69.5
Cpa.g.sc115.63 Carica papaya HOM05D006474 ORTHO05D007994 2.8e-169 599.0 404 67.8
RcHm_v2.0_Chr4g0398871 Rosa chinensis HOM05D006474 ORTHO05D007994 8.3e-169 597.4 398 69.8
Gohir.A05G408600 Gossypium hirsutum HOM05D006474 ORTHO05D007994 1.4e-168 596.7 368 72.6
QL02p064597 Quercus lobata HOM05D006474 ORTHO05D007994 1.4e-168 596.7 413 68.0
FvH4_4g06930 Fragaria vesca HOM05D006474 ORTHO05D007994 3.1e-168 595.5 388 70.4
FAN07G0584 Fragaria x ananassa HOM05D006474 ORTHO05D007994 1.2e-167 593.6 388 70.4
Glyma.17G057700 Glycine max HOM05D006474 ORTHO05D007994 1.2e-167 593.6 398 67.8
Manes.06G017600 Manihot esculenta HOM05D006474 ORTHO05D007994 1.2e-167 593.6 375 71.2
Medtr4g127130 Medicago truncatula HOM05D006474 ORTHO05D007994 1.2e-167 593.6 396 69.9
FAN12G2823 Fragaria x ananassa HOM05D006474 ORTHO05D007994 2.0e-167 592.8 388 70.1
arahy.Tifrunner.gnm1.ann1.HVXZ0P Arachis hypogaea HOM05D006474 ORTHO05D007994 2.7e-167 592.4 400 67.5
FAN17G1111 Fragaria x ananassa HOM05D006474 ORTHO05D007994 5.9e-167 591.3 388 69.8
Eucgr.C00087 Eucalyptus grandis HOM05D006474 ORTHO05D007994 1.0e-166 590.5 391 68.3
Ca_21263_v3 Cicer arietinum L. HOM05D006474 ORTHO05D007994 1.7e-166 589.7 397 67.8
Gorai.012G008200 Gossypium raimondii HOM05D006474 ORTHO05D007994 1.7e-166 589.7 371 71.4
Lj4g0020492 Lotus japonicus HOM05D006474 ORTHO05D007994 1.7e-166 589.7 395 68.6
TPR.G5392 Trifolium pratense HOM05D006474 ORTHO05D007994 8.6e-166 587.4 396 67.9
Lalb_Chr07g0180731 Lupinus albus HOM05D006474 ORTHO05D007994 1.1e-165 587.0 398 68.3
Potri.006G072800 Populus trichocarpa HOM05D006474 ORTHO05D007994 1.1e-165 587.0 363 73.0
Aqoxy7G02891 Aquilegia oxysepala HOM05D006474 ORTHO05D007994 1.9e-165 586.3 376 69.9
Sabra06G0054200 Salix brachista HOM05D006474 ORTHO05D007994 2.5e-165 585.9 363 73.3
MD13G1241100 Malus domestica HOM05D006474 ORTHO05D007994 7.3e-165 584.3 406 65.8
Haze_22046 Corylus avellana HOM05D006474 ORTHO05D007994 4.7e-164 581.6 478 59.8
DCAR_020143 Daucus carota HOM05D006474 ORTHO05D007994 1.0e-163 580.5 366 71.6
Sc14g0003050 Simmondsia chinensis HOM05D006474 ORTHO05D007994 1.0e-163 580.5 393 66.9
Duzib170G0180 Durio zibethinus HOM05D006474 ORTHO05D007994 1.4e-163 580.1 417 64.0
Actinidia38505 Actinidia chinensis HOM05D006474 ORTHO05D007994 4.0e-163 578.6 368 72.8
Nitab4.5_0004916g0010 Nicotiana tabacum HOM05D006474 ORTHO05D007994 5.2e-163 578.2 410 64.4
Nitab4.5_0000028g0400 Nicotiana tabacum HOM05D006474 ORTHO05D007994 6.8e-163 577.8 385 68.1
COL.COLO4_37571 Corchorus olitorius HOM05D006474 ORTHO05D007994 2.0e-162 576.2 364 69.8
Peaxi162Scf00046g00533 Petunia axillaris HOM05D006474 ORTHO05D007994 2.0e-162 576.2 389 66.6
EL10Ac8g19287 Beta vulgaris HOM05D006474 ORTHO05D007994 3.4e-162 575.5 415 62.7
Sopen07g004200 Solanum pennellii HOM05D006474 ORTHO05D007994 1.3e-161 573.5 417 64.0
PGSC0003DMG400019888 Solanum tuberosum HOM05D006474 ORTHO05D007994 1.3e-161 573.5 418 63.9
ATR0580G130 Amborella trichopoda HOM05D006474 ORTHO05D007994 6.4e-161 571.2 385 67.3
Solyc07g008310.3 Solanum lycopersicum HOM05D006474 ORTHO05D007994 6.4e-161 571.2 422 63.0
Ciclev10008481m.g Citrus clementina HOM05D006474 ORTHO05D007994 1.1e-160 570.5 379 69.4
MSTRG.5932 Avicennia marina HOM05D006474 ORTHO05D007994 1.8e-160 569.7 369 67.5
TWI32G0724 Tripterygium wilfordii HOM05D006474 ORTHO05D007994 9.2e-160 567.4 370 68.6
CDE02G2399 Ceratophyllum demersum HOM05D006474 ORTHO05D007994 2.0e-159 566.2 409 63.6
HanXRQChr06g0181391 Helianthus annuus HOM05D006474 ORTHO05D007994 2.7e-159 565.8 370 67.8
AUR62027431 Chenopodium quinoa HOM05D006474 ORTHO05D007994 3.5e-159 565.5 399 63.4
MBI14_g10727_MAGBIO Magnolia biondii HOM05D006474 ORTHO05D007994 7.8e-159 564.3 424 63.0
vmacro20800 Vaccinium macrocarpon HOM05D006474 ORTHO05D007994 1.1e-157 560.5 438 62.1
Cc01_g11810 Coffea canephora HOM05D006474 ORTHO05D007994 1.5e-157 560.1 378 66.7
HPP92_010297 Vanilla planifolia HOM05D006474 ORTHO05D007994 1.9e-157 559.7 394 65.5
arahy.Tifrunner.gnm1.ann1.Z6GGIF Arachis hypogaea HOM05D006474 ORTHO05D007994 5.6e-157 558.1 400 64.5
ECA236G3875 Erigeron canadensis HOM05D006474 ORTHO05D007994 9.5e-157 557.4 370 67.6
PSO063G0500 Papaver somniferum HOM05D006474 ORTHO05D007994 9.5e-157 557.4 395 65.1
Migut.J00779 Erythranthe guttata HOM05D006474 ORTHO05D007994 1.6e-156 556.6 370 66.5
AT4G29890 Arabidopsis thaliana HOM05D006474 ORTHO05D007994 2.8e-156 555.8 422 63.3
Aa31LG2G20660 Aethionema arabicum HOM05D006474 ORTHO05D007994 3.6e-156 555.4 409 63.6
CARHR237790 Cardamine hirsuta HOM05D006474 ORTHO05D007994 4.0e-155 552.0 411 64.5
Thhalv10025251m.g Eutrema salsugineum HOM05D006474 ORTHO05D007994 6.8e-155 551.2 383 67.4
Nn8g40661 Nelumbo nucifera HOM05D006474 ORTHO05D007994 6.8e-155 551.2 349 70.5
Sp7g27700 Schrenkiella parvula HOM05D006474 ORTHO05D007994 6.8e-155 551.2 394 65.7
Dinv41197 Davidia involucrata HOM05D006474 ORTHO05D007994 2.6e-154 549.3 427 62.3
SGA_v2.0_scaffold112G31632 Striga asiatica HOM05D006474 ORTHO05D007994 2.6e-154 549.3 386 64.5
Zm00001eb273050 Zea mays HOM05D006474 ORTHO05D007994 5.8e-154 548.1 368 66.8
AL7G22360 Arabidopsis lyrata HOM05D006474 ORTHO05D007994 9.8e-154 547.4 410 63.7
BcaNung00499 Brassica carinata HOM05D006474 ORTHO05D007994 1.3e-153 547.0 387 67.7
SalBow1G1087 Salvia bowleyana HOM05D006474 ORTHO05D007994 1.7e-153 546.6 370 66.5
Os06g0698785 Oryza sativa ssp. japonica HOM05D006474 ORTHO05D007994 3.7e-153 545.4 388 63.7
Oeu035450.1 Olea europaea HOM05D006474 ORTHO05D007994 8.3e-153 544.3 424 61.1
Carub.0007s1076 Capsella rubella HOM05D006474 ORTHO05D007994 1.6e-151 540.0 366 66.9
A03p59310 Brassica napus HOM05D006474 ORTHO05D007994 2.0e-151 539.7 424 61.3
BraA03t14988Z Brassica rapa HOM05D006474 ORTHO05D007994 2.7e-151 539.3 393 64.9
Gohir.D04G006800 Gossypium hirsutum HOM05D006474 ORTHO05D007994 6.6e-150 534.6 395 63.8
C07p57320 Brassica napus HOM05D006474 ORTHO05D007994 8.6e-150 534.3 430 61.2
BolC7t46201H Brassica oleracea HOM05D006474 ORTHO05D007994 7.3e-149 531.2 430 60.7
Atru.BG.24.p Acer truncatum HOM05D006474 ORTHO05D007994 1.6e-148 530.0 347 71.2
Solyc07g008300.3 Solanum lycopersicum HOM05D006474 ORTHO05D007994 1.8e-147 526.6 371 64.7
Sopen07g004190 Solanum pennellii HOM05D006474 ORTHO05D007994 3.4e-146 522.3 365 64.9
HanXRQChr06g0181381 Helianthus annuus HOM05D006474 ORTHO05D007994 4.4e-146 521.9 373 64.9
Prupe.1G072500 Prunus persica HOM05D006474 ORTHO05D007994 2.9e-145 519.2 381 62.7
Rhsim01G0114400 Rhododendron simsii HOM05D006474 ORTHO05D007994 5.1e-142 508.4 328 72.0
Migut.J00780 Erythranthe guttata HOM05D006474 ORTHO05D007994 5.6e-141 505.0 401 57.1
Psat4g014320 Pisum sativum HOM05D006474 ORTHO05D007994 5.6e-141 505.0 357 65.5
CANSAT54G2413 Cannabis sativa HOM05D006474 ORTHO05D007994 3.6e-140 502.3 370 63.5
Lsat_1_v5_gn_8_68301 Lactuca sativa HOM05D006474 ORTHO05D007994 2.1e-135 486.5 390 60.0
AagrBONN_evm.TU.Sc2ySwM_117.1622 Anthoceros agrestis HOM05D006474 ORTHO05D007994 3.3e-133 479.2 366 59.6
SMO196G0177 Selaginella moellendorffii HOM05D006474 ORTHO05D007994 8.1e-132 474.6 363 60.9
Phvul.003G140100 Phaseolus vulgaris HOM05D006474 ORTHO05D007994 3.1e-131 472.6 293 71.7
Ah.14g085320 Amaranthus hybridus HOM05D006474 ORTHO05D007994 1.5e-130 470.3 337 64.1
AUR62031264 Chenopodium quinoa HOM05D006474 ORTHO05D007994 5.4e-128 461.8 306 67.0
CAN.G403.4 Capsicum annuum HOM05D006474 ORTHO05D007994 4.6e-127 458.8 325 64.6
Pp3c13_13580 Physcomitrium patens HOM05D006474 ORTHO05D007994 6.2e-124 448.4 376 55.9
AUR62043230 Chenopodium quinoa HOM05D006474 ORTHO05D007994 7.6e-122 441.4 366 51.9
Mapoly0089s0013 Marchantia polymorpha HOM05D006474 ORTHO05D007994 7.6e-122 441.4 388 53.6
AUR62032506 Chenopodium quinoa HOM05D006474 ORTHO05D007994 9.9e-122 441.0 366 51.9
PSO170G4238 Papaver somniferum HOM05D006474 ORTHO05D007994 1.4e-115 420.6 277 66.1
EL10Ac6g13937 Beta vulgaris HOM05D006474 ORTHO05D007994 8.2e-108 394.8 366 49.2
Lju50A4G45 Lonicera japonica HOM05D006474 ORTHO05D007994 3.3e-101 372.9 260 66.5
Cfa013469 Carpinus fangiana HOM05D006474 ORTHO05D007994 5.7e-101 372.1 281 64.1
CSS0012665 Camellia sinensis var. sinensis HOM05D006474 ORTHO05D007994 2.1e-95 353.6 226 71.7
MCO02G024 Micromonas commoda HOM05D006474 ORTHO05D007994 3.7e-92 342.8 362 47.8
FAN22G2051 Fragaria x ananassa HOM05D006474 ORTHO05D007994 1.2e-79 301.2 343 49.6
Hund22985 Selenicereus undatus HOM05D006474 ORTHO05D007994 2.6e-77 293.5 365 44.1
Lsat_1_v5_gn_9_69680 Lactuca sativa HOM05D006474 ORTHO05D007994 2.7e-66 256.9 242 55.8
Phvul.010G082000 Phaseolus vulgaris HOM05D006474 ORTHO05D007994 8.5e-65 251.9 186 60.8
PRCOL_00004194 Prasinoderma coloniale HOM05D006474 ORTHO05D007994 3.3e-56 223.4 465 31.2
Lsat_1_v5_gn_5_32380 Lactuca sativa HOM05D006474 ORTHO05D007994 1.1e-51 208.4 194 52.1
Ah.03g136670 Amaranthus hybridus HOM05D006474 ORTHO05D007994 2.3e-49 200.7 235 42.1
SEGI_01125 Sequoiadendron giganteum HOM05D006474 ORTHO05D007994 3.7e-44 183.3 127 62.2
Phvul.011G131100 Phaseolus vulgaris HOM05D006474 ORTHO05D007994 5.4e-35 152.9 102 62.7
Gohir.A08G164600 Gossypium hirsutum HOM05D000075 ORTHO05D000264 1.2e-21 108.6 86 53.5
RcHm_v2.0_Chr4g0398881 Rosa chinensis HOM05D006474 ORTHO05D007994 2.9e-20 104.0 204 30.9
Actinidia29962 Actinidia chinensis HOM05D006474 ORTHO05D007994 3.8e-20 103.6 90 56.7
Gohir.A01G088200 Gossypium hirsutum HOM05D006474 ORTHO05D007994 4.3e-16 90.1 60 71.7
SEGI_13868 Sequoiadendron giganteum HOM05D006474 ORTHO05D007994 1.2e-15 88.6 61 68.9
Thecc.09G192500 Theobroma cacao HOM05D006474 ORTHO05D007994 1.8e-14 84.7 61 65.6
Oeu005633.1 Olea europaea HOM05D006474 ORTHO05D007994 4.0e-14 83.6 63 61.9
Gohir.A05G306101 Gossypium hirsutum HOM05D005508 ORTHO05D007994 4.2e-11 73.6 42 78.6
SEGI_25707 Sequoiadendron giganteum HOM05D006474 ORTHO05D007994 3.5e-10 70.5 53 56.6
Lsat_1_v5_gn_3_77541 Lactuca sativa HOM05D006474 ORTHO05D007994 9.6e-08 62.4 51 54.9
Gohir.A06G077600 Gossypium hirsutum HOM05D000075 ORTHO05D000264 4.0e-06 57.0 71 46.5


User provided reference genes

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