Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C009755.2 Cucumis melo HOM05D002974 ORTHO05D002992 7.7e-66 253.8 143 100.0
ClCG10G016220 Citrullus lanatus HOM05D002974 ORTHO05D002992 9.1e-51 203.8 145 85.5
CsaV3_3G040160 Cucumis sativus L. HOM05D002974 ORTHO05D002992 1.4e-27 126.7 101 69.3
Sed0012008 Sechium edule HOM05D002974 ORTHO05D002992 1.2e-18 97.1 132 43.2
CANSAT64G2862 Cannabis sativa HOM05D002974 ORTHO05D002992 3.1e-14 82.4 80 56.2
CsaV3_4G029660 Cucumis sativus L. HOM05D002974 ORTHO05D002992 3.1e-14 82.4 116 45.7
Eucgr.A02242 Eucalyptus grandis HOM05D002974 ORTHO05D002992 1.5e-13 80.1 75 56.0
Potri.006G038900 Populus trichocarpa HOM05D002974 ORTHO05D002992 3.4e-13 79.0 108 43.5
MELO3C019076.2 Cucumis melo HOM05D002974 ORTHO05D002992 1.3e-12 77.0 110 41.8
ClCG04G004500 Citrullus lanatus HOM05D002974 ORTHO05D002992 2.2e-12 76.3 53 69.8
Cfa020005 Carpinus fangiana HOM05D002974 ORTHO05D002992 2.9e-12 75.9 122 40.2
CiPaw.10G040200 Carya illinoinensis HOM05D002974 ORTHO05D002992 3.7e-12 75.5 120 40.0
PGR031G3974 Punica granatum HOM05D002974 ORTHO05D002992 4.9e-12 75.1 65 60.0
Cc06_g19310 Coffea canephora HOM05D002974 ORTHO05D002992 6.4e-12 74.7 48 70.8
Thecc.05G134100 Theobroma cacao HOM05D002974 ORTHO05D002992 6.4e-12 74.7 43 79.1
Haze_20227 Corylus avellana HOM05D002974 ORTHO05D002992 8.3e-12 74.3 48 70.8
Manes.09G004900 Manihot esculenta HOM05D002974 ORTHO05D002992 1.1e-11 73.9 122 38.5
Prupe.7G038200 Prunus persica HOM05D002974 ORTHO05D002992 1.1e-11 73.9 48 70.8
CSS0033077 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 1.4e-11 73.6 108 40.7
Duzib106G0159 Durio zibethinus HOM05D002974 ORTHO05D002992 2.4e-11 72.8 71 50.7
Duzib128G1163 Durio zibethinus HOM05D002974 ORTHO05D002992 2.4e-11 72.8 41 80.5
Sed0014788 Sechium edule HOM05D002974 ORTHO05D002992 3.2e-11 72.4 105 38.1
CiPaw.09G047800 Carya illinoinensis HOM05D002974 ORTHO05D002992 4.1e-11 72.0 48 68.8
Lalb_Chr06g0173671 Lupinus albus HOM05D002974 ORTHO05D002992 4.1e-11 72.0 88 47.7
Lalb_Chr24g0400351 Lupinus albus HOM05D002974 ORTHO05D002992 7.1e-11 71.2 49 71.4
Actinidia01827 Actinidia chinensis HOM05D002974 ORTHO05D002992 9.2e-11 70.9 112 42.0
Nn2g14777 Nelumbo nucifera HOM05D002974 ORTHO05D002992 1.2e-10 70.5 116 36.2
Psat3g078800 Pisum sativum HOM05D002974 ORTHO05D002992 1.2e-10 70.5 49 73.5
QL07p010402 Quercus lobata HOM05D002974 ORTHO05D002992 1.2e-10 70.5 40 77.5
Lj1g0016303 Lotus japonicus HOM05D002974 ORTHO05D002992 2.7e-10 69.3 79 50.6
TAR623G1017 Trochodendron aralioides HOM05D002974 ORTHO05D002992 2.7e-10 69.3 48 66.7
Glyma.19G130400 Glycine max HOM05D002974 ORTHO05D002992 3.5e-10 68.9 47 70.2
Sed0004403 Sechium edule HOM05D002974 ORTHO05D002992 3.5e-10 68.9 49 63.3
Atru.chr1.1439 Acer truncatum HOM05D002974 ORTHO05D002992 7.8e-10 67.8 87 46.0
Sabra16G0038800 Salix brachista HOM05D002974 ORTHO05D002992 7.8e-10 67.8 120 39.2
Glyma.03G127800 Glycine max HOM05D002974 ORTHO05D002992 1.0e-09 67.4 42 76.2
Nn7g36749 Nelumbo nucifera HOM05D002974 ORTHO05D002992 1.0e-09 67.4 111 40.5
Nitab4.5_0000812g0090 Nicotiana tabacum HOM05D015198 ORTHO05D002992 1.7e-09 66.6 43 67.4
Potri.016G036600 Populus trichocarpa HOM05D002974 ORTHO05D002992 1.7e-09 66.6 47 66.0
Cpa.g.sc5.168 Carica papaya HOM05D002974 ORTHO05D002992 2.3e-09 66.2 77 50.6
RcHm_v2.0_Chr2g0125651 Rosa chinensis HOM05D002974 ORTHO05D002992 2.3e-09 66.2 44 70.5
arahy.Tifrunner.gnm1.ann1.C03B5F Arachis hypogaea HOM05D002974 ORTHO05D002992 3.0e-09 65.9 40 82.5
TPR.G8953 Trifolium pratense HOM05D002974 ORTHO05D002992 3.0e-09 65.9 113 41.6
Lalb_Chr22g0357431 Lupinus albus HOM05D002974 ORTHO05D002992 3.9e-09 65.5 44 75.0
Os05g0390800 Oryza sativa ssp. japonica HOM05D002974 ORTHO05D002992 3.9e-09 65.5 44 75.0
Zm00001eb369260 Zea mays HOM05D002974 ORTHO05D002992 3.9e-09 65.5 44 75.0
MSTRG.10792 Avicennia marina HOM05D002974 ORTHO05D002992 5.1e-09 65.1 70 50.0
Os01g0808900 Oryza sativa ssp. japonica HOM05D002974 ORTHO05D002992 5.1e-09 65.1 44 75.0
CSS0001226 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 6.6e-09 64.7 115 40.0
DCAR_013643 Daucus carota HOM05D002974 ORTHO05D002992 6.6e-09 64.7 67 53.7
Nitab4.5_0004588g0030 Nicotiana tabacum HOM05D015198 ORTHO05D002992 6.6e-09 64.7 43 67.4
Peaxi162Scf00003g00491 Petunia axillaris HOM05D015198 ORTHO05D002992 8.6e-09 64.3 76 46.1
Phvul.001G123400 Phaseolus vulgaris HOM05D002974 ORTHO05D002992 8.6e-09 64.3 42 71.4
VMungo1383G0235 Vigna mungo HOM05D002974 ORTHO05D002992 8.6e-09 64.3 42 71.4
Aqoxy2G00396 Aquilegia oxysepala HOM05D002974 ORTHO05D002992 1.1e-08 63.9 85 42.4
Medtr7g089860 Medicago truncatula HOM05D002974 ORTHO05D002992 1.5e-08 63.5 42 76.2
SalBow6G6653 Salvia bowleyana HOM05D002974 ORTHO05D002992 1.5e-08 63.5 97 42.3
TAR633G1036 Trochodendron aralioides HOM05D002974 ORTHO05D002992 1.5e-08 63.5 111 40.5
MSTRG.26159 Avicennia marina HOM05D002974 ORTHO05D002992 1.9e-08 63.2 41 70.7
SGA_v2.0_scaffold105G30292 Striga asiatica HOM05D002974 ORTHO05D002992 2.5e-08 62.8 46 63.0
TWI53G1119 Tripterygium wilfordii HOM05D002974 ORTHO05D002992 2.5e-08 62.8 48 64.6
Atru.chr12.1277 Acer truncatum HOM05D002974 ORTHO05D002992 3.3e-08 62.4 117 36.8
Solyc10g078440.2 Solanum lycopersicum HOM05D015198 ORTHO05D002992 3.3e-08 62.4 57 57.9
COL.COLO4_04711 Corchorus olitorius HOM05D002974 ORTHO05D002992 5.6e-08 61.6 44 68.2
CSS0032574 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 7.3e-08 61.2 114 39.5
Oeu059346.1 Olea europaea HOM05D002974 ORTHO05D002992 7.3e-08 61.2 46 60.9
Sabra19G0016800 Salix brachista HOM05D001365 ORTHO05D010069 7.3e-08 61.2 72 41.7
THA.LOC109116532 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 7.3e-08 61.2 44 65.9
TAR633G0725 Trochodendron aralioides HOM05D001496 ORTHO05D007453 7.3e-08 61.2 97 42.3
MD14G1088500 Malus domestica HOM05D002974 ORTHO05D002992 9.5e-08 60.8 48 62.5
SGA_v2.0_scaffold105G30310 Striga asiatica HOM05D002974 ORTHO05D002992 9.5e-08 60.8 44 63.6
Zm00001eb005210 Zea mays HOM05D002974 ORTHO05D002992 9.5e-08 60.8 48 62.5
CiPaw.14G008700 Carya illinoinensis HOM05D002974 ORTHO05D002992 1.2e-07 60.5 86 46.5
ECA234G2872 Erigeron canadensis HOM05D002974 ORTHO05D002992 1.2e-07 60.5 94 40.4
Gohir.A11G307100 Gossypium hirsutum HOM05D002974 ORTHO05D002992 1.2e-07 60.5 57 56.1
PGSC0003DMG400008372 Solanum tuberosum HOM05D015198 ORTHO05D002992 1.2e-07 60.5 37 73.0
FvH4_6g25410 Fragaria vesca HOM05D002974 ORTHO05D002992 2.1e-07 59.7 46 65.2
FAN05G2143 Fragaria x ananassa HOM05D002974 ORTHO05D002992 2.1e-07 59.7 46 65.2
THA.LOC104824399 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 2.1e-07 59.7 119 37.8
Migut.J01657 Erythranthe guttata HOM05D002974 ORTHO05D002992 2.8e-07 59.3 42 61.9
Oeu029509.1 Olea europaea HOM05D002974 ORTHO05D002992 2.8e-07 59.3 46 60.9
ATR1096G079 Amborella trichopoda HOM05D002974 ORTHO05D002992 3.6e-07 58.9 49 63.3
CiPaw.13G015100 Carya illinoinensis HOM05D002974 ORTHO05D002992 3.6e-07 58.9 112 33.9
Sabra06G0026200 Salix brachista HOM05D002974 ORTHO05D002992 3.6e-07 58.9 120 37.5
unitig_748.g7224 Utricularia gibba HOM05D002974 ORTHO05D002992 3.6e-07 58.9 98 44.9
Dinv06180 Davidia involucrata HOM05D002974 ORTHO05D002992 4.7e-07 58.5 96 38.5
Thhalv10017346m.g Eutrema salsugineum HOM05D002974 ORTHO05D002992 4.7e-07 58.5 54 53.7
PSO339G5722 Papaver somniferum HOM05D002974 ORTHO05D002992 4.7e-07 58.5 60 53.3
C04p02500 Brassica napus HOM05D002974 ORTHO05D002992 6.2e-07 58.2 73 49.3
Carub.0005s2345 Capsella rubella HOM05D002974 ORTHO05D002992 6.2e-07 58.2 55 56.4
FAN02G0528 Fragaria x ananassa HOM05D002974 ORTHO05D002992 6.2e-07 58.2 46 63.0
PSO384G2085 Papaver somniferum HOM05D002974 ORTHO05D002992 6.2e-07 58.2 39 69.2
Sabra13G0040600 Salix brachista HOM05D011447 ORTHO05D010069 6.2e-07 58.2 51 52.9
THA.LOC104820144 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 6.2e-07 58.2 44 61.4
AL5G38080 Arabidopsis lyrata HOM05D002974 ORTHO05D002992 8.1e-07 57.8 54 53.7
AT3G56710 Arabidopsis thaliana HOM05D002974 ORTHO05D002992 8.1e-07 57.8 54 53.7
CARHR166850 Cardamine hirsuta HOM05D002974 ORTHO05D002992 8.1e-07 57.8 52 55.8
Gohir.D11G322600 Gossypium hirsutum HOM05D002974 ORTHO05D002992 8.1e-07 57.8 57 54.4
Gorai.007G352700 Gossypium raimondii HOM05D002974 ORTHO05D002992 8.1e-07 57.8 57 54.4
Lalb_Chr19g0133001 Lupinus albus HOM05D002974 ORTHO05D002992 8.1e-07 57.8 104 40.4
Migut.N01854 Erythranthe guttata HOM05D002974 ORTHO05D002992 1.1e-06 57.4 112 35.7
Potri.001G029700 Populus trichocarpa HOM05D002974 ORTHO05D002992 1.1e-06 57.4 38 68.4
Sabra03G0145400 Salix brachista HOM05D002974 ORTHO05D002992 1.1e-06 57.4 38 68.4
Sp4g23480 Schrenkiella parvula HOM05D002974 ORTHO05D002992 1.1e-06 57.4 56 55.4
FAN10G2850 Fragaria x ananassa HOM05D002974 ORTHO05D002992 1.4e-06 57.0 41 65.9
Sc19g0008170 Simmondsia chinensis HOM05D015198 ORTHO05D002992 1.4e-06 57.0 39 69.2
TWI15G0153 Tripterygium wilfordii HOM05D002974 ORTHO05D002992 1.4e-06 57.0 41 63.4
HPP92_028460 Vanilla planifolia HOM05D002974 ORTHO05D002992 1.4e-06 57.0 44 63.6
AL4G39150 Arabidopsis lyrata HOM05D002974 ORTHO05D002992 1.8e-06 56.6 57 56.1
Cfa010941 Carpinus fangiana HOM05D002974 ORTHO05D002992 1.8e-06 56.6 35 74.3
FAN09G2803 Fragaria x ananassa HOM05D002974 ORTHO05D002992 1.8e-06 56.6 46 63.0
Medtr3g013980 Medicago truncatula HOM05D002974 ORTHO05D002992 1.8e-06 56.6 113 38.1
TPR.G31150 Trifolium pratense HOM05D002974 ORTHO05D002992 1.8e-06 56.6 114 37.7
unitig_26.g9507 Utricularia gibba HOM05D002974 ORTHO05D002992 1.8e-06 56.6 50 58.0
Manes.08G137100 Manihot esculenta HOM05D011447 ORTHO05D010069 2.4e-06 56.2 102 38.2
PGR031G0048 Punica granatum HOM05D002974 ORTHO05D002992 2.4e-06 56.2 35 74.3
QL04p017813 Quercus lobata HOM05D002974 ORTHO05D002992 2.4e-06 56.2 109 31.2
QL04p018674 Quercus lobata HOM05D002974 ORTHO05D002992 2.4e-06 56.2 109 31.2
THA.LOC104816020 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 2.4e-06 56.2 86 37.2
Dinv44699 Davidia involucrata HOM05D002974 ORTHO05D002992 3.1e-06 55.8 41 61.0
FAN01G3097 Fragaria x ananassa HOM05D002974 ORTHO05D002992 3.1e-06 55.8 41 63.4
FAN03G0828 Fragaria x ananassa HOM05D002974 ORTHO05D002992 3.1e-06 55.8 41 63.4
SHI49841 Sapria himalayana HOM05D048774 ORTHO05D002992 3.1e-06 55.8 111 35.1
SHI50452 Sapria himalayana HOM05D048774 ORTHO05D002992 3.1e-06 55.8 111 35.1
Duzib106G1811 Durio zibethinus HOM05D002974 ORTHO05D002992 4.0e-06 55.5 66 51.5
Lj3g0008937 Lotus japonicus HOM05D002974 ORTHO05D002992 4.0e-06 55.5 37 67.6
Potri.003G194700 Populus trichocarpa HOM05D002974 ORTHO05D002992 4.0e-06 55.5 38 65.8
BcaC01g05357 Brassica carinata HOM05D002974 ORTHO05D002992 5.2e-06 55.1 48 60.4
C03p27500 Brassica napus HOM05D002974 ORTHO05D002992 5.2e-06 55.1 48 60.4
BolC3t15126H Brassica oleracea HOM05D002974 ORTHO05D002992 5.2e-06 55.1 48 60.4
CDE09G1110 Ceratophyllum demersum HOM05D002974 ORTHO05D002992 5.2e-06 55.1 41 58.5
AT2G41180 Arabidopsis thaliana HOM05D002974 ORTHO05D002992 6.8e-06 54.7 57 54.4
BcaB02g08350 Brassica carinata HOM05D002974 ORTHO05D002992 6.8e-06 54.7 40 70.0
BcaB02g08351 Brassica carinata HOM05D002974 ORTHO05D002992 6.8e-06 54.7 40 65.0
BraA04t16084Z Brassica rapa HOM05D002974 ORTHO05D002992 6.8e-06 54.7 40 70.0
BraA04t16085Z Brassica rapa HOM05D002974 ORTHO05D002992 6.8e-06 54.7 40 70.0
FvH4_7g03520 Fragaria vesca HOM05D002974 ORTHO05D002992 6.8e-06 54.7 32 78.1
FAN06G3677 Fragaria x ananassa HOM05D002974 ORTHO05D002992 6.8e-06 54.7 32 78.1
Manes.11G007000 Manihot esculenta HOM05D002974 ORTHO05D002992 6.8e-06 54.7 35 71.4
Prupe.2G041200 Prunus persica HOM05D002974 ORTHO05D002992 6.8e-06 54.7 41 63.4
Rhsim04G0111200 Rhododendron simsii HOM05D002974 ORTHO05D002992 6.8e-06 54.7 96 39.6
Rhsim04G0112500 Rhododendron simsii HOM05D002974 ORTHO05D002992 6.8e-06 54.7 96 39.6
RcHm_v2.0_Chr1g0325821 Rosa chinensis HOM05D002974 ORTHO05D002992 6.8e-06 54.7 37 67.6
Sp5g05850 Schrenkiella parvula HOM05D002974 ORTHO05D002992 6.8e-06 54.7 52 53.8
Thhalv10006291m.g Eutrema salsugineum HOM05D002974 ORTHO05D002992 8.9e-06 54.3 43 65.1
Os05g0491700 Oryza sativa ssp. japonica HOM05D002974 ORTHO05D002992 8.9e-06 54.3 42 66.7
Potri.013G043800 Populus trichocarpa HOM05D011447 ORTHO05D010069 8.9e-06 54.3 50 52.0
Potri.016G093900 Populus trichocarpa HOM05D011447 ORTHO05D010069 8.9e-06 54.3 50 52.0
PGSC0003DMG400005401 Solanum tuberosum HOM05D002974 ORTHO05D002992 8.9e-06 54.3 42 64.3


User provided reference genes

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