Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C009724.2 Cucumis melo HOM05D006173 ORTHO05D007685 7.9e-258 893.3 450 100.0
CsaV3_3G039830 Cucumis sativus L. HOM05D006173 ORTHO05D007685 1.1e-243 846.3 450 91.8
Sed0007984 Sechium edule HOM05D006173 ORTHO05D007685 2.3e-241 838.6 450 91.8
ClCG10G016510 Citrullus lanatus HOM05D006173 ORTHO05D007685 2.6e-237 825.1 490 83.5
TWI74G0774 Tripterygium wilfordii HOM05D006173 ORTHO05D007685 4.5e-197 691.4 454 76.4
Cfa019941 Carpinus fangiana HOM05D006173 ORTHO05D007685 2.3e-196 689.1 451 75.2
Atru.chr1.1516 Acer truncatum HOM05D006173 ORTHO05D007685 2.9e-196 688.7 451 76.3
Prupe.7G021600 Prunus persica HOM05D006173 ORTHO05D007685 3.8e-196 688.3 451 77.4
CiPaw.10G124100 Carya illinoinensis HOM05D006173 ORTHO05D007685 4.2e-195 684.9 451 76.1
Ciclev10011725m.g Citrus clementina HOM05D006173 ORTHO05D007685 7.2e-195 684.1 451 73.6
Manes.10G077600 Manihot esculenta HOM05D006173 ORTHO05D007685 3.0e-193 678.7 447 74.5
Dinv10196 Davidia involucrata HOM05D006173 ORTHO05D007685 1.8e-190 669.5 451 74.9
Glyma.19G125000 Glycine max HOM05D006173 ORTHO05D007685 9.2e-190 667.2 451 72.1
Potri.016G030400 Populus trichocarpa HOM05D006173 ORTHO05D007685 1.2e-189 666.8 451 70.5
Gorai.007G351000 Gossypium raimondii HOM05D006173 ORTHO05D007685 2.0e-189 666.0 446 72.6
Gohir.D11G320800 Gossypium hirsutum HOM05D006173 ORTHO05D007685 3.5e-189 665.2 446 72.4
Thecc.05G131000 Theobroma cacao HOM05D006173 ORTHO05D007685 1.7e-188 662.9 447 72.7
Gohir.A11G305400 Gossypium hirsutum HOM05D006173 ORTHO05D007685 3.3e-187 658.7 446 72.0
Lj1g0020171 Lotus japonicus HOM05D006173 ORTHO05D007685 4.3e-187 658.3 451 69.8
PGR142G0634 Punica granatum HOM05D006173 ORTHO05D007685 4.3e-187 658.3 454 71.6
Glyma.03G120400 Glycine max HOM05D006173 ORTHO05D007685 4.7e-186 654.8 451 70.3
FvH4_7g04320 Fragaria vesca HOM05D006173 ORTHO05D007685 1.4e-185 653.3 451 73.2
Cpa.g.sc33.197 Carica papaya HOM05D006173 ORTHO05D007685 2.0e-184 649.4 454 68.7
Hma1.2p1_0044F.1_g026020 Hydrangea macrophylla HOM05D006173 ORTHO05D007685 3.4e-184 648.7 465 69.5
Duzib106G1718 Durio zibethinus HOM05D006173 ORTHO05D007685 1.1e-182 643.7 446 70.4
Medtr7g088540 Medicago truncatula HOM05D006173 ORTHO05D007685 1.9e-182 642.9 456 67.8
arahy.Tifrunner.gnm1.ann1.NS6SL1 Arachis hypogaea HOM05D006173 ORTHO05D007685 3.5e-181 638.6 464 66.4
Actinidia17973 Actinidia chinensis HOM05D006173 ORTHO05D007685 7.8e-181 637.5 451 69.4
Eucgr.K01689 Eucalyptus grandis HOM05D006173 ORTHO05D007685 1.1e-179 633.6 457 68.7
Phvul.001G116600 Phaseolus vulgaris HOM05D006173 ORTHO05D007685 4.3e-179 631.7 451 67.2
Haze_20298 Corylus avellana HOM05D006173 ORTHO05D007685 1.6e-178 629.8 470 66.4
THA.LOC104814894 Tarenaya hassleriana HOM05D006173 ORTHO05D007685 1.4e-177 626.7 450 70.4
EL10Ac3g07343 Beta vulgaris HOM05D006173 ORTHO05D007685 2.6e-176 622.5 451 67.4
AT3G56900 Arabidopsis thaliana HOM05D006173 ORTHO05D007685 4.4e-176 621.7 453 70.9
Carub.0005s2364 Capsella rubella HOM05D006173 ORTHO05D007685 4.4e-176 621.7 453 70.0
VMungo0331G1996 Vigna mungo HOM05D006173 ORTHO05D007685 5.8e-176 621.3 450 66.4
Migut.K00169 Erythranthe guttata HOM05D006173 ORTHO05D007685 8.3e-175 617.5 446 70.4
CARHR167050 Cardamine hirsuta HOM05D006173 ORTHO05D007685 1.4e-174 616.7 453 70.2
MSTRG.10773 Avicennia marina HOM05D006173 ORTHO05D007685 2.4e-174 615.9 445 70.6
AL5G38300 Arabidopsis lyrata HOM05D006173 ORTHO05D007685 3.2e-174 615.5 453 69.8
Sp5g05690 Schrenkiella parvula HOM05D006173 ORTHO05D007685 7.0e-174 614.4 453 69.5
PGSC0003DMG400017881 Solanum tuberosum HOM05D006173 ORTHO05D007685 3.5e-173 612.1 452 68.6
Sabra16G0033900 Salix brachista HOM05D006173 ORTHO05D007685 7.8e-173 610.9 496 62.1
PSO541G4485 Papaver somniferum HOM05D006173 ORTHO05D007685 4.3e-171 605.1 445 67.4
FAN10G0117 Fragaria x ananassa HOM05D006173 ORTHO05D007685 7.3e-171 604.4 462 66.2
arahy.Tifrunner.gnm1.ann1.TSE1DU Arachis hypogaea HOM05D006173 ORTHO05D007685 9.5e-171 604.0 486 62.6
Sopen08g011280 Solanum pennellii HOM05D006173 ORTHO05D007685 3.6e-170 602.1 452 67.7
Solyc08g016801.1 Solanum lycopersicum HOM05D006173 ORTHO05D007685 6.2e-170 601.3 452 67.7
PSO675G1003 Papaver somniferum HOM05D006173 ORTHO05D007685 3.1e-169 599.0 445 67.6
Thhalv10005968m.g Eutrema salsugineum HOM05D006173 ORTHO05D007685 8.9e-169 597.4 453 65.1
BcaC07g40109 Brassica carinata HOM05D006173 ORTHO05D007685 3.4e-168 595.5 447 64.2
ECA247G0085 Erigeron canadensis HOM05D006173 ORTHO05D007685 2.2e-167 592.8 451 65.6
BolC8t50833H Brassica oleracea HOM05D006173 ORTHO05D007685 3.7e-167 592.0 453 63.4
Oeu060754.2 Olea europaea HOM05D006173 ORTHO05D007685 2.4e-166 589.3 490 61.6
A09p49770 Brassica napus HOM05D006173 ORTHO05D007685 9.2e-166 587.4 453 62.7
C08p32150 Brassica napus HOM05D006173 ORTHO05D007685 9.2e-166 587.4 453 63.1
BraA09t40430Z Brassica rapa HOM05D006173 ORTHO05D007685 9.2e-166 587.4 453 62.7
TPR.G27968 Trifolium pratense HOM05D006173 ORTHO05D007685 4.6e-165 585.1 412 68.4
Cc06_g22820 Coffea canephora HOM05D006173 ORTHO05D007685 5.1e-164 581.6 473 61.9
BcaC07g40002 Brassica carinata HOM05D006173 ORTHO05D007685 6.6e-164 581.3 447 63.3
FAN01G1644 Fragaria x ananassa HOM05D006173 ORTHO05D007685 4.7e-162 575.1 555 55.5
Lsat_1_v5_gn_9_32341 Lactuca sativa HOM05D006173 ORTHO05D007685 4.4e-160 568.5 449 62.6
MD12G1112000 Malus domestica HOM05D006173 ORTHO05D007685 7.6e-160 567.8 528 57.8
CSS0033436 Camellia sinensis var. sinensis HOM05D006173 ORTHO05D007685 4.9e-159 565.1 430 67.2
Os12g0129400 Oryza sativa ssp. japonica HOM05D006173 ORTHO05D007685 7.1e-158 561.2 448 59.8
Aa31LG10G11760 Aethionema arabicum HOM05D006173 ORTHO05D007685 1.2e-157 560.5 527 54.6
AUR62020996 Chenopodium quinoa HOM05D006173 ORTHO05D007685 1.6e-157 560.1 435 65.3
Peaxi162Scf00937g00117 Petunia axillaris HOM05D006173 ORTHO05D007685 1.0e-156 557.4 432 63.4
Zm00001eb405260 Zea mays HOM05D006173 ORTHO05D007685 1.3e-156 557.0 446 59.0
Os11g0132700 Oryza sativa ssp. japonica HOM05D006173 ORTHO05D007685 3.9e-156 555.4 448 58.9
FAN06G1001 Fragaria x ananassa HOM05D006173 ORTHO05D007685 5.6e-155 551.6 472 61.0
HanXRQChr14g0457301 Helianthus annuus HOM05D006173 ORTHO05D007685 4.0e-153 545.4 448 61.8
Hund19061 Selenicereus undatus HOM05D006173 ORTHO05D007685 2.9e-151 539.3 429 62.9
TAR623G0939 Trochodendron aralioides HOM05D006173 ORTHO05D007685 5.6e-147 525.0 402 66.7
SEGI_22413 Sequoiadendron giganteum HOM05D006173 ORTHO05D007685 6.2e-146 521.5 463 56.4
Sc19g0007880 Simmondsia chinensis HOM05D006173 ORTHO05D007685 3.3e-139 499.2 401 61.6
CDE02G3082 Ceratophyllum demersum HOM05D006173 ORTHO05D007685 2.1e-138 496.5 450 56.4
SalBow1G0987 Salvia bowleyana HOM05D006173 ORTHO05D007685 2.7e-133 479.6 478 54.0
vmacro07758 Vaccinium macrocarpon HOM05D006173 ORTHO05D007685 3.5e-133 479.2 486 53.9
Aqoxy3G01734 Aquilegia oxysepala HOM05D006173 ORTHO05D007685 7.4e-131 471.5 337 67.7
Psat3g082320 Pisum sativum HOM05D006173 ORTHO05D007685 2.4e-129 466.5 357 66.4
AUR62018437 Chenopodium quinoa HOM05D006173 ORTHO05D007685 1.8e-124 450.3 409 57.9
SGA_v2.0_scaffold106G30556 Striga asiatica HOM05D006173 ORTHO05D007685 7.7e-120 434.9 467 51.2
Mapoly0010s0124 Marchantia polymorpha HOM05D006173 ORTHO05D007685 6.5e-119 431.8 478 44.8
VMungo1383G1641 Vigna mungo HOM05D006173 ORTHO05D007685 7.2e-110 401.7 401 54.6
RhsimUnG0020600 Rhododendron simsii HOM05D006173 ORTHO05D007685 1.6e-109 400.6 450 50.0
MBI19_g25019_MAGBIO Magnolia biondii HOM05D006173 ORTHO05D007685 1.7e-106 390.6 392 54.8
Pp3c11_18220 Physcomitrium patens HOM05D006173 ORTHO05D007685 1.4e-105 387.5 459 42.5
SMO116G0186 Selaginella moellendorffii HOM05D006173 ORTHO05D007685 1.7e-103 380.6 457 43.3
SMO133G0039 Selaginella moellendorffii HOM05D006173 ORTHO05D007685 2.2e-103 380.2 457 43.3
Ca_08352_v3 Cicer arietinum L. HOM05D006173 ORTHO05D007685 2.5e-102 376.7 300 62.0
Solyc08g016808.1 Solanum lycopersicum HOM05D006173 ORTHO05D007685 1.0e-100 371.3 337 61.7
GSVIVG01025850001 Vitis vinifera HOM05D006173 ORTHO05D007685 3.6e-93 346.3 210 76.7
MD14G1101100 Malus domestica HOM05D006173 ORTHO05D007685 5.3e-89 332.4 215 73.5
RcHm_v2.0_Chr1g0329271 Rosa chinensis HOM05D006173 ORTHO05D007685 2.0e-88 330.5 201 78.6
Lalb_Chr22g0358001 Lupinus albus HOM05D006173 ORTHO05D007685 2.2e-87 327.0 201 75.1
Nitab4.5_0003840g0020 Nicotiana tabacum HOM05D006173 ORTHO05D007685 8.5e-87 325.1 281 58.0
QL07p014498 Quercus lobata HOM05D006173 ORTHO05D007685 3.0e-84 316.6 170 84.7
Nitab4.5_0000211g0120 Nicotiana tabacum HOM05D006173 ORTHO05D007685 4.8e-82 309.3 262 59.5
ATR0307G134 Amborella trichopoda HOM05D006173 ORTHO05D007685 3.5e-80 303.1 198 70.2
RcHm_v2.0_Chr1g0329281 Rosa chinensis HOM05D006173 ORTHO05D007685 7.7e-80 302.0 231 64.5
FAN03G1994 Fragaria x ananassa HOM05D006173 ORTHO05D007685 1.6e-77 294.3 239 62.3
HPP92_002170 Vanilla planifolia HOM05D006173 ORTHO05D007685 4.7e-77 292.7 167 77.8
Lalb_Chr22g0357991 Lupinus albus HOM05D006173 ORTHO05D007685 1.0e-76 291.6 233 60.9
Lj1A24G67 Lonicera japonica HOM05D006173 ORTHO05D007685 1.3e-74 284.6 264 58.0
MD14G1101000 Malus domestica HOM05D006173 ORTHO05D007685 1.3e-74 284.6 249 60.2
Lj1A24G66 Lonicera japonica HOM05D006173 ORTHO05D007685 5.6e-70 269.2 150 83.3
SMO069G0001 Selaginella moellendorffii HOM05D006173 ORTHO05D007685 4.0e-68 263.1 228 52.2
ATR0307G100 Amborella trichopoda HOM05D006173 ORTHO05D007685 5.2e-68 262.7 236 53.4
CANSAT64G0701 Cannabis sativa HOM05D006173 ORTHO05D007685 6.6e-63 245.7 138 82.6
Solyc08g036600.3 Solanum lycopersicum HOM05D006173 ORTHO05D007685 2.0e-59 234.2 212 56.1
QL07p014493 Quercus lobata HOM05D006173 ORTHO05D007685 3.4e-59 233.4 180 63.3
GSVIVG01025851001 Vitis vinifera HOM05D006173 ORTHO05D007685 4.1e-57 226.5 182 60.4
unitig_46.g18486 Utricularia gibba HOM05D006173 ORTHO05D007685 5.4e-57 226.1 242 48.3
DCAR_020632 Daucus carota HOM05D002466 ORTHO05D002668 1.5e-54 218.0 194 58.2
HPP92_002168 Vanilla planifolia HOM05D006173 ORTHO05D007685 2.8e-53 213.8 213 49.3
CBR_g54315 Chara braunii HOM05D006173 ORTHO05D007685 1.0e-47 195.3 337 34.7
Nitab4.5_0000275g0010 Nicotiana tabacum HOM05D006173 ORTHO05D007685 1.9e-38 164.5 87 79.3
SGA_v2.0_scaffold106G30559 Striga asiatica HOM05D000268 ORTHO05D000261 9.6e-38 162.2 262 41.6
TAR623G0990 Trochodendron aralioides HOM05D006173 ORTHO05D007685 6.2e-37 159.5 97 76.3
Nitab4.5_0000211g0140 Nicotiana tabacum HOM05D006173 ORTHO05D007685 2.5e-30 137.5 85 72.9
PRCOL_00002577 Prasinoderma coloniale HOM05D006173 ORTHO05D007685 5.6e-30 136.3 274 31.0
Nitab4.5_0003840g0030 Nicotiana tabacum HOM05D006173 ORTHO05D007685 3.8e-26 123.6 70 74.3
Lj2A730T36 Lonicera japonica HOM05D006173 ORTHO05D007685 8.1e-21 105.9 242 34.3
Os12g0131300 Oryza sativa ssp. japonica HOM05D006173 ORTHO05D007685 2.5e-17 94.4 59 74.6
Lj2A730T35 Lonicera japonica HOM05D006173 ORTHO05D007685 5.1e-15 86.7 58 70.7
Lsat_1_v5_gn_4_93961 Lactuca sativa HOM05D006173 ORTHO05D007685 1.9e-14 84.7 53 71.7
Psat7g244360 Pisum sativum HOM05D000821 ORTHO05D000931 4.6e-08 63.5 43 62.8
Cre10.g466300 Chlamydomonas reinhardtii HOM05D006173 ORTHO05D007685 5.1e-07 60.1 169 35.5


User provided reference genes

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