Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C009592.2 Cucumis melo HOM05D004349 ORTHO05D005097 2.4e-90 335.5 169 100.0
ClCG10G017820 Citrullus lanatus HOM05D004349 ORTHO05D005097 9.0e-90 333.6 169 98.8
CsaV3_7G005510 Cucumis sativus L. HOM05D004349 ORTHO05D005097 2.2e-88 328.9 169 99.4
Sed0001935 Sechium edule HOM05D004349 ORTHO05D005097 5.5e-87 324.3 169 95.9
Sed0019694 Sechium edule HOM05D004349 ORTHO05D005097 5.5e-87 324.3 169 96.4
CiPaw.09G026100 Carya illinoinensis HOM05D004349 ORTHO05D005097 7.4e-84 313.9 169 90.5
Cfa020113 Carpinus fangiana HOM05D004349 ORTHO05D005097 1.3e-83 313.2 169 91.1
COL.COLO4_29437 Corchorus olitorius HOM05D004349 ORTHO05D005097 1.6e-83 312.8 167 91.6
Haze_20078 Corylus avellana HOM05D004349 ORTHO05D005097 2.8e-83 312.0 169 90.5
QL11p005722 Quercus lobata HOM05D004349 ORTHO05D005097 3.7e-83 311.6 168 89.9
TWI74G1533 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 4.8e-83 311.2 169 89.3
FvH4_6g21430 Fragaria vesca HOM05D004349 ORTHO05D005097 6.3e-83 310.8 166 92.2
FAN05G0412 Fragaria x ananassa HOM05D004349 ORTHO05D005097 6.3e-83 310.8 166 92.2
FAN05G3233 Fragaria x ananassa HOM05D004349 ORTHO05D005097 6.3e-83 310.8 166 92.2
RcHm_v2.0_Chr4g0406251 Rosa chinensis HOM05D004349 ORTHO05D005097 6.3e-83 310.8 166 92.2
FAN02G1450 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.1e-82 310.1 166 92.2
Prupe.7G086000 Prunus persica HOM05D004349 ORTHO05D005097 1.1e-82 310.1 166 91.0
Gohir.D11G331900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 2.4e-82 308.9 169 89.3
Gorai.007G362800 Gossypium raimondii HOM05D004349 ORTHO05D005097 2.4e-82 308.9 169 89.3
Duzib093G0127 Durio zibethinus HOM05D004349 ORTHO05D005097 4.1e-82 308.1 169 89.3
Solyc04g081430.3 Solanum lycopersicum HOM05D004349 ORTHO05D005097 5.3e-82 307.8 169 89.3
Sopen04g035040 Solanum pennellii HOM05D004349 ORTHO05D005097 5.3e-82 307.8 169 89.3
Ciclev10012936m.g Citrus clementina HOM05D004349 ORTHO05D005097 1.5e-81 306.2 169 88.8
Dinv25025 Davidia involucrata HOM05D004349 ORTHO05D005097 1.5e-81 306.2 168 88.7
Actinidia01590 Actinidia chinensis HOM05D004349 ORTHO05D005097 2.6e-81 305.4 168 89.3
Phvul.010G156700 Phaseolus vulgaris HOM05D004349 ORTHO05D005097 3.4e-81 305.1 169 88.8
QL05p072253 Quercus lobata HOM05D004349 ORTHO05D005097 3.4e-81 305.1 168 87.5
Atru.chr8.1222 Acer truncatum HOM05D004349 ORTHO05D005097 4.5e-81 304.7 169 87.6
Glyma.07G029300 Glycine max HOM05D004349 ORTHO05D005097 7.7e-81 303.9 169 87.6
Glyma.08G213500 Glycine max HOM05D004349 ORTHO05D005097 1.7e-80 302.8 169 87.0
Nitab4.5_0001874g0080 Nicotiana tabacum HOM05D004349 ORTHO05D005097 2.2e-80 302.4 169 87.0
Aqoxy1G00443 Aquilegia oxysepala HOM05D004349 ORTHO05D005097 2.9e-80 302.0 168 87.5
Manes.08G039900 Manihot esculenta HOM05D004349 ORTHO05D005097 3.8e-80 301.6 169 87.6
Potri.016G062800 Populus trichocarpa HOM05D004349 ORTHO05D005097 3.8e-80 301.6 169 87.6
Medtr6g471120 Medicago truncatula HOM05D004349 ORTHO05D005097 5.0e-80 301.2 169 87.0
Psat5g280400 Pisum sativum HOM05D004349 ORTHO05D005097 8.5e-80 300.4 169 87.0
TWI77G0543 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 8.5e-80 300.4 168 87.5
Ca_01401_v3 Cicer arietinum L. HOM05D004349 ORTHO05D005097 1.1e-79 300.1 169 85.8
Medtr2g094720 Medicago truncatula HOM05D004349 ORTHO05D005097 1.4e-79 299.7 169 86.4
EL10Ac2g02766 Beta vulgaris HOM05D004349 ORTHO05D005097 1.9e-79 299.3 167 85.6
Cc09_g02100 Coffea canephora HOM05D004349 ORTHO05D005097 1.9e-79 299.3 169 87.6
MD14G1049500 Malus domestica HOM05D004349 ORTHO05D005097 1.9e-79 299.3 166 87.3
Hma1.2p1_0516F.1_g170550 Hydrangea macrophylla HOM05D004349 ORTHO05D005097 2.5e-79 298.9 168 86.3
Peaxi162Scf00463g00127 Petunia axillaris HOM05D004349 ORTHO05D005097 2.5e-79 298.9 169 85.8
arahy.Tifrunner.gnm1.ann1.FMT65J Arachis hypogaea HOM05D004349 ORTHO05D005097 3.2e-79 298.5 166 88.6
FAN09G4703 Fragaria x ananassa HOM05D004349 ORTHO05D005097 3.2e-79 298.5 183 83.1
PSO528G0119 Papaver somniferum HOM05D004349 ORTHO05D005097 3.2e-79 298.5 169 86.4
GSVIVG01033427001 Vitis vinifera HOM05D004349 ORTHO05D005097 3.2e-79 298.5 169 87.0
FAN14G0676 Fragaria x ananassa HOM05D004349 ORTHO05D005097 4.2e-79 298.1 183 83.1
FAN14G3215 Fragaria x ananassa HOM05D004349 ORTHO05D005097 4.2e-79 298.1 183 83.1
Rhsim04G0092200 Rhododendron simsii HOM05D004349 ORTHO05D005097 4.2e-79 298.1 168 86.3
Rhsim04G0092400 Rhododendron simsii HOM05D004349 ORTHO05D005097 5.5e-79 297.7 168 86.3
arahy.Tifrunner.gnm1.ann1.9IE653 Arachis hypogaea HOM05D004349 ORTHO05D005097 9.4e-79 297.0 166 88.0
MD12G1050700 Malus domestica HOM05D004349 ORTHO05D005097 9.4e-79 297.0 166 86.7
PSO170G4263 Papaver somniferum HOM05D004349 ORTHO05D005097 9.4e-79 297.0 169 86.4
THA.LOC104821832 Tarenaya hassleriana HOM05D004349 ORTHO05D005097 9.4e-79 297.0 169 87.0
TPR.G11586 Trifolium pratense HOM05D004349 ORTHO05D005097 9.4e-79 297.0 169 86.4
LjContig00564g0000037 Lotus japonicus HOM05D004349 ORTHO05D005097 2.7e-78 295.4 169 85.8
Cpa.g.sc85.16 Carica papaya HOM05D004349 ORTHO05D005097 6.1e-78 294.3 169 87.0
PGSC0003DMG401009863 Solanum tuberosum HOM05D004349 ORTHO05D005097 6.1e-78 294.3 186 80.6
ECA240G0294 Erigeron canadensis HOM05D004349 ORTHO05D005097 1.0e-77 293.5 169 86.4
Ah.13g075520 Amaranthus hybridus HOM05D004349 ORTHO05D005097 1.4e-77 293.1 169 83.4
CANSAT54G2032 Cannabis sativa HOM05D004349 ORTHO05D005097 5.1e-77 291.2 169 84.0
MSTRG.10496 Avicennia marina HOM05D004349 ORTHO05D005097 6.7e-77 290.8 169 84.6
DCAR_018883 Daucus carota HOM05D004349 ORTHO05D005097 3.3e-76 288.5 182 79.1
AL6G12510 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 4.3e-76 288.1 169 83.4
Sp6g39510 Schrenkiella parvula HOM05D004349 ORTHO05D005097 4.3e-76 288.1 169 83.4
Migut.L01584 Erythranthe guttata HOM05D004349 ORTHO05D005097 5.7e-76 287.7 169 82.8
Thhalv10021663m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 5.7e-76 287.7 169 82.8
TAR623G1044 Trochodendron aralioides HOM05D004349 ORTHO05D005097 2.2e-75 285.8 169 86.4
Thhalv10014853m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 2.8e-75 285.4 169 82.8
TPR.G23269 Trifolium pratense HOM05D004349 ORTHO05D005097 2.8e-75 285.4 169 82.2
Nn2g15821 Nelumbo nucifera HOM05D004349 ORTHO05D005097 3.7e-75 285.0 167 85.0
Aa31LG1G21860 Aethionema arabicum HOM05D004349 ORTHO05D005097 6.3e-75 284.3 169 81.7
Thecc.05G180500 Theobroma cacao HOM05D004349 ORTHO05D005097 8.2e-75 283.9 149 91.9
AL6G12940 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 1.4e-74 283.1 167 82.6
AT5G03220 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 1.4e-74 283.1 169 81.7
Nitab4.5_0000571g0040 Nicotiana tabacum HOM05D004349 ORTHO05D005097 1.4e-74 283.1 192 75.5
SGA_v2.0_scaffold21G09532 Striga asiatica HOM05D004349 ORTHO05D005097 2.4e-74 282.3 169 82.2
arahy.Tifrunner.gnm1.ann1.2RRL5Q Arachis hypogaea HOM05D004349 ORTHO05D005097 3.1e-74 282.0 194 75.3
Hund26707 Selenicereus undatus HOM05D004349 ORTHO05D005097 3.1e-74 282.0 207 71.0
Carub.0006s0201 Capsella rubella HOM05D004349 ORTHO05D005097 6.9e-74 280.8 169 81.1
Lalb_Chr23g0277751 Lupinus albus HOM05D004349 ORTHO05D005097 6.9e-74 280.8 169 79.9
Sabra06G0151800 Salix brachista HOM05D004349 ORTHO05D005097 1.2e-73 280.0 150 89.3
CARHR210130 Cardamine hirsuta HOM05D004349 ORTHO05D005097 2.0e-73 279.3 169 81.1
TAR623G0936 Trochodendron aralioides HOM05D004349 ORTHO05D005097 3.4e-73 278.5 149 89.9
AT5G03500 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 4.5e-73 278.1 169 80.5
ECA248G3305 Erigeron canadensis HOM05D004349 ORTHO05D005097 4.5e-73 278.1 169 81.1
VMungo0331G0313 Vigna mungo HOM05D004349 ORTHO05D005097 5.9e-73 277.7 148 90.5
Lalb_Chr19g0125421 Lupinus albus HOM05D004349 ORTHO05D005097 1.0e-72 276.9 169 78.1
Eucgr.A02508 Eucalyptus grandis HOM05D004349 ORTHO05D005097 1.7e-72 276.2 149 88.6
HPP92_013495 Vanilla planifolia HOM05D004349 ORTHO05D005097 2.2e-72 275.8 158 85.4
AUR62015286 Chenopodium quinoa HOM05D004349 ORTHO05D005097 2.9e-72 275.4 149 87.9
Rhsim10G0130900 Rhododendron simsii HOM05D004349 ORTHO05D005097 6.5e-72 274.2 214 67.8
CARHR040500 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.1e-71 273.5 169 77.5
Gohir.A11G314900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 1.1e-71 273.5 143 90.9
Lj2C360G6 Lonicera japonica HOM05D004349 ORTHO05D005097 1.9e-71 272.7 149 85.9
HPP92_026048 Vanilla planifolia HOM05D004349 ORTHO05D005097 1.9e-71 272.7 158 84.8
BcaC03g13019 Brassica carinata HOM05D004349 ORTHO05D005097 3.2e-71 271.9 169 79.9
SEGI_10501 Sequoiadendron giganteum HOM05D004349 ORTHO05D005097 5.5e-71 271.2 168 75.0
BolC2t06089H Brassica oleracea HOM05D004349 ORTHO05D005097 7.2e-71 270.8 169 79.3
ATR0580G353 Amborella trichopoda HOM05D004349 ORTHO05D005097 6.1e-70 267.7 147 86.4
unitig_37.g12649 Utricularia gibba HOM05D006346 ORTHO05D007910 1.4e-69 266.5 169 78.7
Lsat_1_v5_gn_1_58740 Lactuca sativa HOM05D004349 ORTHO05D005097 1.8e-69 266.2 145 87.6
CDE02G3593 Ceratophyllum demersum HOM05D000001 ORTHO05D000424 3.9e-69 265.0 154 83.1
SHI30021 Sapria himalayana HOM05D004349 ORTHO05D005097 1.1e-68 263.5 167 75.4
MBI18_g03872_MAGBIO Magnolia biondii HOM05D004349 ORTHO05D005097 1.5e-68 263.1 166 78.3
Mapoly0052s0099 Marchantia polymorpha HOM05D004349 ORTHO05D005097 2.0e-68 262.7 168 73.8
BraA02t04750Z Brassica rapa HOM05D004349 ORTHO05D005097 5.7e-68 261.2 150 83.3
CSS0044984 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 9.7e-68 260.4 153 83.7
Os04g0661800 Oryza sativa ssp. japonica HOM05D004349 ORTHO05D005097 2.2e-67 259.2 169 76.9
Prupe.6G266300 Prunus persica HOM05D004349 ORTHO05D005097 2.2e-67 259.2 177 76.8
vmacro17893 Vaccinium macrocarpon HOM05D004349 ORTHO05D005097 1.8e-66 256.1 239 59.0
Zm00001eb067450 Zea mays HOM05D004349 ORTHO05D005097 7.0e-66 254.2 168 75.6
BraA10t45308Z Brassica rapa HOM05D004349 ORTHO05D005097 3.5e-65 251.9 149 81.9
Zm00001eb432780 Zea mays HOM05D004349 ORTHO05D005097 7.2e-63 244.2 167 73.7
PGR004G2245 Punica granatum HOM05D004349 ORTHO05D005097 9.4e-63 243.8 126 89.7
CAN.G311.28 Capsicum annuum HOM05D004349 ORTHO05D005097 4.7e-62 241.5 124 91.1
Prupe.1G181600 Prunus persica HOM05D004349 ORTHO05D005097 1.0e-61 240.4 156 79.5
A10p32710 Brassica napus HOM05D004349 ORTHO05D005097 1.8e-61 239.6 149 77.9
Carub.0006s2456 Capsella rubella HOM05D004349 ORTHO05D005097 8.8e-61 237.3 170 75.3
C02p00910 Brassica napus HOM05D004349 ORTHO05D005097 4.4e-60 235.0 149 77.9
arahy.Tifrunner.gnm1.ann1.UX8DIM Arachis hypogaea HOM05D004349 ORTHO05D005097 2.2e-59 232.6 166 75.9
BcaNung06685 Brassica carinata HOM05D004349 ORTHO05D005097 6.3e-59 231.1 152 76.3
Sc13g0002530 Simmondsia chinensis HOM05D004349 ORTHO05D005097 4.1e-58 228.4 123 86.2
AL3G38450 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 8.5e-56 220.7 132 82.6
BolC9t60086H Brassica oleracea HOM05D004349 ORTHO05D005097 8.5e-56 220.7 168 69.0
HanXRQChr01g0024771 Helianthus annuus HOM05D004349 ORTHO05D005097 3.2e-55 218.8 124 89.5
SMO340G0091 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 6.1e-54 214.5 155 67.7
Prupe.8G249100 Prunus persica HOM05D004349 ORTHO05D005097 1.4e-53 213.4 166 68.7
CBR_g46752 Chara braunii HOM05D004349 ORTHO05D005097 2.3e-53 212.6 188 57.4
HanXRQChr03g0090511 Helianthus annuus HOM05D004349 ORTHO05D005097 4.0e-53 211.8 124 84.7
Dinv24030 Davidia involucrata HOM05D004349 ORTHO05D005097 8.8e-53 210.7 124 86.3
Prupe.1G547000 Prunus persica HOM05D004349 ORTHO05D005097 1.5e-52 209.9 121 86.8
Prupe.1G300700 Prunus persica HOM05D004349 ORTHO05D005097 2.0e-52 209.5 121 86.0
Prupe.7G024200 Prunus persica HOM05D004349 ORTHO05D005097 2.0e-52 209.5 121 86.0
Prupe.3G021700 Prunus persica HOM05D004349 ORTHO05D005097 4.4e-52 208.4 121 85.1
Prupe.1G035300 Prunus persica HOM05D004349 ORTHO05D005097 1.3e-51 206.8 123 84.6
ATR0564G039 Amborella trichopoda HOM05D004349 ORTHO05D005097 8.3e-51 204.1 146 75.3
C09p73550 Brassica napus HOM05D004349 ORTHO05D005097 1.8e-50 203.0 148 72.3
CSS0033717 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 5.3e-50 201.4 141 73.0
SMO358G0681 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 6.5e-48 194.5 134 69.4
RcHm_v2.0_Chr3g0478001 Rosa chinensis HOM05D004349 ORTHO05D005097 6.3e-43 177.9 106 85.8
Oeu057599.1 Olea europaea HOM05D004349 ORTHO05D005097 7.7e-41 171.0 90 84.4
Prupe.2G085900 Prunus persica HOM05D004349 ORTHO05D005097 2.3e-40 169.5 90 91.1
FAN05G0350 Fragaria x ananassa HOM05D004349 ORTHO05D005097 7.2e-39 164.5 94 93.6
Sabra16G0064800 Salix brachista HOM05D004349 ORTHO05D005097 7.8e-33 144.4 83 88.0
Pp3c5_20850 Physcomitrium patens HOM05D004349 ORTHO05D005097 1.5e-31 140.2 112 65.2
AagrBONN_evm.TU.Sc2ySwM_117.2767 Anthoceros agrestis HOM05D004349 ORTHO05D005097 3.4e-28 129.0 94 68.1
AagrBONN_evm.TU.Sc2ySwM_362.1623 Anthoceros agrestis HOM05D004349 ORTHO05D005097 4.4e-28 128.6 100 65.0
CARHR099790 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.4e-26 123.6 82 74.4
Rhsim04G0093300 Rhododendron simsii HOM05D004349 ORTHO05D005097 3.2e-26 122.5 73 86.3
RcHm_v2.0_Chr3g0478061 Rosa chinensis HOM05D004349 ORTHO05D005097 7.0e-26 121.3 103 63.1
AL6G12900 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 5.6e-23 111.7 78 66.7
CSS0042444 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 9.5e-23 110.9 75 70.7
CARHR251030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 2.1e-22 109.8 72 73.6
CARHR218030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 4.9e-19 98.6 64 75.0
MCO10G402 Micromonas commoda HOM05D004349 ORTHO05D005097 4.1e-18 95.5 156 39.7
CARHR258920 Cardamine hirsuta HOM05D004349 ORTHO05D005097 3.5e-17 92.4 65 72.3
PRCOL_00002553 Prasinoderma coloniale HOM05D004349 ORTHO05D005097 6.0e-17 91.7 133 39.8
RcHm_v2.0_Chr3g0478211 Rosa chinensis HOM05D004349 ORTHO05D005097 4.3e-15 85.5 49 89.8
RcHm_v2.0_Chr3g0478341 Rosa chinensis HOM05D004349 ORTHO05D005097 4.3e-15 85.5 49 89.8
RcHm_v2.0_Chr3g0478621 Rosa chinensis HOM05D004349 ORTHO05D005097 1.1e-13 80.9 108 51.9
Rhsim04G0093100 Rhododendron simsii HOM05D004349 ORTHO05D005097 3.1e-13 79.3 44 77.3
Cre01.g062902 Chlamydomonas reinhardtii HOM05D004349 ORTHO05D005097 3.4e-12 75.9 165 35.8
FAN04G2473 Fragaria x ananassa HOM05D004349 ORTHO05D005097 2.2e-11 73.2 38 86.8


User provided reference genes

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