Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C009547.2 Cucumis melo HOM05D004363 ORTHO05D005110 0.0e+00 2589.7 1339 100.0
CsaV3_3G038050 Cucumis sativus L. HOM05D004363 ORTHO05D005110 0.0e+00 2164.8 1389 83.2
ClCG10G018260 Citrullus lanatus HOM05D004363 ORTHO05D005110 0.0e+00 2067.7 1465 76.7
Sed0002127 Sechium edule HOM05D004363 ORTHO05D005110 0.0e+00 1960.3 1403 75.1
Prupe.7G093600 Prunus persica HOM05D004363 ORTHO05D005110 0.0e+00 1523.1 1404 59.3
MD12G1041600 Malus domestica HOM05D004363 ORTHO05D005110 0.0e+00 1518.4 1403 59.3
CiPaw.10G018600 Carya illinoinensis HOM05D004363 ORTHO05D005110 0.0e+00 1515.7 1393 59.4
MD14G1040700 Malus domestica HOM05D004363 ORTHO05D005110 0.0e+00 1509.6 1412 58.1
Ciclev10010925m.g Citrus clementina HOM05D004363 ORTHO05D005110 0.0e+00 1500.7 1396 58.7
Atru.chr8.1332 Acer truncatum HOM05D004363 ORTHO05D005110 0.0e+00 1485.7 1409 57.8
Dinv31774 Davidia involucrata HOM05D004363 ORTHO05D005110 0.0e+00 1467.2 1394 57.5
Duzib093G0100 Durio zibethinus HOM05D004363 ORTHO05D005110 0.0e+00 1466.1 1405 57.9
COL.COLO4_29546 Corchorus olitorius HOM05D004363 ORTHO05D005110 0.0e+00 1461.4 1399 56.3
FvH4_6g20450 Fragaria vesca HOM05D004363 ORTHO05D005110 0.0e+00 1460.7 1407 57.6
CANSAT64G2344 Cannabis sativa HOM05D004363 ORTHO05D005110 0.0e+00 1458.4 1390 57.3
Potri.016G068800 Populus trichocarpa HOM05D004363 ORTHO05D005110 0.0e+00 1456.8 1387 57.7
GSVIVG01022591001 Vitis vinifera HOM05D004363 ORTHO05D005110 0.0e+00 1446.8 1386 57.4
Sabra16G0069700 Salix brachista HOM05D004363 ORTHO05D005110 0.0e+00 1435.6 1415 56.8
Duzib128G0297 Durio zibethinus HOM05D004363 ORTHO05D005110 0.0e+00 1429.1 1433 55.5
TAR628G0010 Trochodendron aralioides HOM05D004363 ORTHO05D005110 0.0e+00 1425.2 1409 55.7
FAN09G2042 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1416.4 1489 53.1
TAR169G0003 Trochodendron aralioides HOM05D004363 ORTHO05D005110 0.0e+00 1415.6 1419 55.0
FAN14G2782 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1414.8 1516 53.4
CSS0038425 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 0.0e+00 1414.4 1360 55.9
Cfa020046 Carpinus fangiana HOM05D004363 ORTHO05D005110 0.0e+00 1405.2 1397 56.0
TWI74G0412 Tripterygium wilfordii HOM05D004363 ORTHO05D005110 0.0e+00 1402.1 1391 55.7
Lj1g0000064 Lotus japonicus HOM05D004363 ORTHO05D005110 0.0e+00 1401.0 1393 55.5
Psat0s3922g0040 Pisum sativum HOM05D004363 ORTHO05D005110 0.0e+00 1399.8 1394 55.2
TPR.G31289 Trifolium pratense HOM05D004363 ORTHO05D005110 0.0e+00 1397.5 1390 54.9
Medtr7g106380 Medicago truncatula HOM05D004363 ORTHO05D005110 0.0e+00 1396.3 1393 55.3
Ca_09062_v3 Cicer arietinum L. HOM05D004363 ORTHO05D005110 0.0e+00 1394.4 1394 55.2
Glyma.03G202700 Glycine max HOM05D004363 ORTHO05D005110 0.0e+00 1387.9 1392 54.8
Gohir.A11G315700 Gossypium hirsutum HOM05D004363 ORTHO05D005110 0.0e+00 1384.8 1400 55.9
Gohir.D11G332900 Gossypium hirsutum HOM05D004363 ORTHO05D005110 0.0e+00 1380.2 1400 56.0
Glyma.19G200400 Glycine max HOM05D004363 ORTHO05D005110 0.0e+00 1379.0 1393 54.8
Gorai.007G363900 Gossypium raimondii HOM05D004363 ORTHO05D005110 0.0e+00 1379.0 1401 55.9
Manes.08G034300 Manihot esculenta HOM05D004363 ORTHO05D005110 0.0e+00 1374.8 1329 57.0
Eucgr.A02575 Eucalyptus grandis HOM05D004363 ORTHO05D005110 0.0e+00 1374.4 1394 54.2
TWI77G0878 Tripterygium wilfordii HOM05D004363 ORTHO05D005110 0.0e+00 1369.4 1427 53.4
arahy.Tifrunner.gnm1.ann1.KT4HPP Arachis hypogaea HOM05D004363 ORTHO05D005110 0.0e+00 1367.4 1388 54.1
Lalb_Chr01g0017831 Lupinus albus HOM05D004363 ORTHO05D005110 0.0e+00 1367.4 1392 54.7
Oeu035643.1 Olea europaea HOM05D004363 ORTHO05D005110 0.0e+00 1359.0 1390 53.5
vmacro07483 Vaccinium macrocarpon HOM05D004363 ORTHO05D005110 0.0e+00 1355.1 1402 53.4
VMungo1383G2497 Vigna mungo HOM05D004363 ORTHO05D005110 0.0e+00 1352.4 1392 54.2
arahy.Tifrunner.gnm1.ann1.D60SL5 Arachis hypogaea HOM05D004363 ORTHO05D005110 0.0e+00 1351.3 1412 53.3
Gorai.009G393900 Gossypium raimondii HOM05D004363 ORTHO05D005110 0.0e+00 1345.9 1385 54.4
THA.LOC104820934 Tarenaya hassleriana HOM05D004363 ORTHO05D005110 0.0e+00 1345.5 1406 52.4
Phvul.001G196200 Phaseolus vulgaris HOM05D004363 ORTHO05D005110 0.0e+00 1344.7 1401 53.7
QL07p036386 Quercus lobata HOM05D004363 ORTHO05D005110 0.0e+00 1329.3 1220 59.8
Thecc.05G106200 Theobroma cacao HOM05D004363 ORTHO05D005110 0.0e+00 1329.3 1207 60.1
Nn6g34649 Nelumbo nucifera HOM05D004363 ORTHO05D005110 0.0e+00 1328.9 1419 52.6
PGR004G0690 Punica granatum HOM05D004363 ORTHO05D005110 0.0e+00 1325.5 1394 53.0
Migut.J00693 Erythranthe guttata HOM05D004363 ORTHO05D005110 0.0e+00 1325.1 1407 52.1
MSTRG.19302 Avicennia marina HOM05D004363 ORTHO05D005110 0.0e+00 1324.7 1403 52.0
Solyc01g006960.3 Solanum lycopersicum HOM05D004363 ORTHO05D005110 0.0e+00 1319.7 1400 52.4
MSTRG.5891 Avicennia marina HOM05D004363 ORTHO05D005110 0.0e+00 1304.3 1392 52.0
Sopen01g002950 Solanum pennellii HOM05D004363 ORTHO05D005110 0.0e+00 1302.3 1398 52.4
Sp6g27880 Schrenkiella parvula HOM05D004363 ORTHO05D005110 0.0e+00 1297.7 1404 51.5
RcHm_v2.0_Chr3g0476301 Rosa chinensis HOM05D004363 ORTHO05D005110 0.0e+00 1293.9 1210 58.9
C03p08890 Brassica napus HOM05D004363 ORTHO05D005110 0.0e+00 1290.8 1405 51.3
Aqoxy1G00638 Aquilegia oxysepala HOM05D004363 ORTHO05D005110 0.0e+00 1289.6 1409 51.2
BolC3t13384H Brassica oleracea HOM05D004363 ORTHO05D005110 0.0e+00 1289.6 1406 51.3
AL6G27170 Arabidopsis lyrata HOM05D004363 ORTHO05D005110 0.0e+00 1285.4 1403 51.3
Carub.0006s1447 Capsella rubella HOM05D004363 ORTHO05D005110 0.0e+00 1281.2 1405 51.6
Thhalv10012466m.g Eutrema salsugineum HOM05D004363 ORTHO05D005110 0.0e+00 1280.4 1402 51.6
BraA03t10093Z Brassica rapa HOM05D004363 ORTHO05D005110 0.0e+00 1278.5 1407 51.1
A03p07650 Brassica napus HOM05D004363 ORTHO05D005110 0.0e+00 1276.5 1407 51.0
CAN.G911.40 Capsicum annuum HOM05D004363 ORTHO05D005110 0.0e+00 1272.3 1400 50.9
DCAR_020694 Daucus carota HOM05D004363 ORTHO05D005110 0.0e+00 1271.1 1471 48.8
Sc01g0005470 Simmondsia chinensis HOM05D004363 ORTHO05D005110 0.0e+00 1270.0 1394 51.0
SGA_v2.0_scaffold13G06653 Striga asiatica HOM05D004363 ORTHO05D005110 0.0e+00 1268.4 1375 50.5
BolC9t58910H Brassica oleracea HOM05D004363 ORTHO05D005110 0.0e+00 1267.3 1400 50.9
AT5G16280 Arabidopsis thaliana HOM05D004363 ORTHO05D005110 0.0e+00 1263.8 1403 49.7
A10p22780 Brassica napus HOM05D004363 ORTHO05D005110 0.0e+00 1260.4 1400 50.8
BraA10t44344Z Brassica rapa HOM05D004363 ORTHO05D005110 0.0e+00 1259.6 1400 50.8
Aa31LG11G13340 Aethionema arabicum HOM05D004363 ORTHO05D005110 0.0e+00 1258.8 1427 50.3
PSO384G4461 Papaver somniferum HOM05D004363 ORTHO05D005110 0.0e+00 1258.0 1407 51.5
PSO339G1158 Papaver somniferum HOM05D004363 ORTHO05D005110 0.0e+00 1254.6 1409 51.1
FAN05G1872 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1245.3 1176 58.6
Lalb_Chr25g0287961 Lupinus albus HOM05D004363 ORTHO05D005110 0.0e+00 1243.8 1389 51.0
ECA233G0072 Erigeron canadensis HOM05D004363 ORTHO05D005110 0.0e+00 1241.9 1401 50.0
AUR62041186 Chenopodium quinoa HOM05D004363 ORTHO05D005110 0.0e+00 1229.2 1381 48.8
EL10Ac5g11738 Beta vulgaris HOM05D004363 ORTHO05D005110 0.0e+00 1226.5 1417 49.8
FAN02G1528 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1226.5 1218 56.1
BcaB01g04994 Brassica carinata HOM05D004363 ORTHO05D005110 0.0e+00 1226.1 1392 50.2
FAN05G3395 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1222.6 1222 56.2
HanXRQChr02g0053261 Helianthus annuus HOM05D004363 ORTHO05D005110 0.0e+00 1222.2 1398 49.5
BcaNung06113 Brassica carinata HOM05D004363 ORTHO05D005110 0.0e+00 1219.9 1375 50.0
Hund10860 Selenicereus undatus HOM05D004363 ORTHO05D005110 0.0e+00 1216.8 1374 50.0
Rhsim11G0045000 Rhododendron simsii HOM05D004363 ORTHO05D005110 0.0e+00 1198.3 1245 53.3
Peaxi162Scf00582g00064 Petunia axillaris HOM05D004363 ORTHO05D005110 0.0e+00 1179.1 1254 52.6
Dinv12347 Davidia involucrata HOM05D004363 ORTHO05D005110 0.0e+00 1171.4 1179 53.7
Lsat_1_v5_gn_6_33820 Lactuca sativa HOM05D004363 ORTHO05D005110 0.0e+00 1166.8 1394 48.3
Gohir.D04G092000 Gossypium hirsutum HOM05D004363 ORTHO05D005110 0.0e+00 1166.0 1141 55.3
Cc06_g06670 Coffea canephora HOM05D004363 ORTHO05D005110 0.0e+00 1152.9 1219 52.8
AUR62030686 Chenopodium quinoa HOM05D004363 ORTHO05D005110 0.0e+00 1152.1 1380 47.0
ATR0772G191 Amborella trichopoda HOM05D004363 ORTHO05D005110 0.0e+00 1107.0 1421 46.2
HPP92_013952 Vanilla planifolia HOM05D004363 ORTHO05D005110 0.0e+00 1104.7 1362 46.0
Zm00001eb060010 Zea mays HOM05D004363 ORTHO05D005110 1.7e-308 1063.1 1411 43.8
CDE11G0453 Ceratophyllum demersum HOM05D004363 ORTHO05D005110 1.0e-300 1037.3 1392 45.0
Os03g0786900 Oryza sativa ssp. japonica HOM05D004363 ORTHO05D005110 1.3e-300 1036.9 1380 44.4
SEGI_03324 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 2.8e-287 992.6 1485 42.0
Nitab4.5_0001177g0040 Nicotiana tabacum HOM05D004363 ORTHO05D005110 8.1e-250 868.2 986 49.7
CARHR197030 Cardamine hirsuta HOM05D004363 ORTHO05D005110 2.1e-229 800.4 695 59.9
Gohir.A04G054800 Gossypium hirsutum HOM05D004363 ORTHO05D005110 1.5e-227 794.3 801 54.8
Ah.07g203620 Amaranthus hybridus HOM05D004363 ORTHO05D005110 6.2e-226 788.9 877 51.3
Pp3c6_8810 Physcomitrium patens HOM05D004363 ORTHO05D005110 4.2e-214 749.6 1444 34.6
Mapoly0053s0062 Marchantia polymorpha HOM05D004363 ORTHO05D005110 4.0e-209 733.0 1450 35.1
AagrBONN_evm.TU.Sc2ySwM_228.1566 Anthoceros agrestis HOM05D004363 ORTHO05D005110 1.0e-191 675.2 1284 34.8
TAR623G0254 Trochodendron aralioides HOM05D004363 ORTHO05D005110 3.8e-167 593.6 632 51.9
unitig_578.g15812 Utricularia gibba HOM05D004363 ORTHO05D005110 7.5e-155 552.7 1340 31.1
SMO196G0050 Selaginella moellendorffii HOM05D004363 ORTHO05D005110 4.1e-153 547.0 997 37.3
Nitab4.5_0001191g0010 Nicotiana tabacum HOM05D004363 ORTHO05D005110 3.4e-139 500.7 718 42.1
Lj1A1055T62 Lonicera japonica HOM05D004363 ORTHO05D005110 2.6e-131 474.6 349 70.2
Cpa.g.sc104.13 Carica papaya HOM05D004363 ORTHO05D005110 4.4e-123 447.2 488 51.8
Cpa.g.sc104.16 Carica papaya HOM05D004363 ORTHO05D005110 2.8e-117 427.9 320 65.3
Cpa.g.sc104.18 Carica papaya HOM05D004363 ORTHO05D005110 8.1e-117 426.4 414 58.2
Haze_20158 Corylus avellana HOM05D004363 ORTHO05D005110 1.5e-110 405.6 507 50.9
Haze_20157 Corylus avellana HOM05D004363 ORTHO05D005110 1.8e-100 372.1 222 76.6
Actinidia03984 Actinidia chinensis HOM05D004363 ORTHO05D005110 1.9e-78 298.9 463 40.0
Actinidia03876 Actinidia chinensis HOM05D004363 ORTHO05D005110 7.7e-75 287.0 480 38.1
Cre01.g024400 Chlamydomonas reinhardtii HOM05D004363 ORTHO05D005110 3.8e-66 258.1 1149 24.3
Hma1.2p1_0064F.1_g034600 Hydrangea macrophylla HOM05D004363 ORTHO05D005110 2.7e-64 251.9 282 48.2
CSS0042424 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 1.4e-63 249.6 163 68.7
Gohir.A04G054750 Gossypium hirsutum HOM05D004363 ORTHO05D005110 2.0e-62 245.7 251 56.2
Gohir.D04G091900 Gossypium hirsutum HOM05D004363 ORTHO05D005110 3.7e-61 241.5 246 55.7
CSS0011588 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 5.0e-58 231.1 146 69.2
Lj1C1055T8 Lonicera japonica HOM05D004363 ORTHO05D005110 8.5e-58 230.3 261 49.4
SEGI_33831 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 3.6e-56 224.9 189 56.6
PRCOL_00001893 Prasinoderma coloniale HOM05D004363 ORTHO05D005110 2.6e-54 218.8 1070 23.3
Ah.07g203610 Amaranthus hybridus HOM05D004363 ORTHO05D005110 8.3e-45 187.2 220 45.9
CBR_g74641 Chara braunii HOM05D004363 ORTHO05D005110 3.5e-43 181.8 747 24.4
Nn3g20229 Nelumbo nucifera HOM05D004363 ORTHO05D005110 2.6e-38 165.6 200 49.0
RcHm_v2.0_Chr3g0476311 Rosa chinensis HOM05D004363 ORTHO05D005110 1.1e-36 160.2 151 57.6
CSS0037163 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 7.3e-33 147.5 85 81.2
Actinidia03879 Actinidia chinensis HOM05D004363 ORTHO05D005110 1.2e-32 146.7 149 54.4
Rhsim11G0045100 Rhododendron simsii HOM05D004363 ORTHO05D005110 1.0e-31 143.7 146 54.8
C09p60760 Brassica napus HOM05D004363 ORTHO05D005110 3.1e-31 142.1 150 50.7
SHI08961 Sapria himalayana HOM05D004363 ORTHO05D005110 5.2e-31 141.4 415 28.4
SHI08960 Sapria himalayana HOM05D004363 ORTHO05D005110 1.7e-26 126.3 209 40.2
MCO09G191 Micromonas commoda HOM05D004363 ORTHO05D005110 9.5e-25 120.6 495 24.6
SEGI_22432 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 1.6e-24 119.8 253 33.2
SEGI_28545 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 1.4e-23 116.7 92 77.2
Ah.07g203630 Amaranthus hybridus HOM05D004363 ORTHO05D005110 5.2e-23 114.8 231 32.9
SEGI_19509 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 3.7e-21 108.6 85 61.2
SHI08951 Sapria himalayana HOM05D004363 ORTHO05D005110 1.1e-20 107.1 91 60.4
SHI08956 Sapria himalayana HOM05D004363 ORTHO05D005110 9.2e-20 104.0 81 79.0
arahy.Tifrunner.gnm1.ann1.BA6WS2 Arachis hypogaea HOM05D004363 ORTHO05D005110 1.3e-18 100.1 66 68.2
Actinidia03877 Actinidia chinensis HOM05D004363 ORTHO05D005110 3.9e-18 98.6 100 50.0
SEGI_10491 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 7.3e-17 94.4 129 38.0
Actinidia03986 Actinidia chinensis HOM05D004363 ORTHO05D005110 1.6e-16 93.2 64 68.8
SHI08962 Sapria himalayana HOM05D004363 ORTHO05D005110 2.8e-16 92.4 227 33.0
arahy.Tifrunner.gnm1.ann1.P34FZA Arachis hypogaea HOM05D004363 ORTHO05D005110 5.8e-14 84.7 55 69.1
SHI08954 Sapria himalayana HOM05D004363 ORTHO05D005110 4.9e-13 81.6 57 63.2
ATR0820G261 Amborella trichopoda HOM05D004363 ORTHO05D005110 3.0e-10 72.4 60 56.7
Lsat_1_v5_gn_8_3860 Lactuca sativa HOM05D004363 ORTHO05D005110 1.1e-09 70.5 87 44.8
arahy.Tifrunner.gnm1.ann1.5GE6FN Arachis hypogaea HOM05D000323 ORTHO05D000201 2.8e-08 65.9 41 70.7
CAN.G526.3 Capsicum annuum HOM05D004363 ORTHO05D005110 1.1e-07 63.9 76 64.5
Lsat_1_v5_gn_3_22681 Lactuca sativa HOM05D004363 ORTHO05D005110 1.8e-07 63.2 45 66.7
Glyma.19G200100 Glycine max HOM05D003781 ORTHO05D004299 6.8e-07 61.2 73 61.6
Lsat_1_v5_gn_8_81001 Lactuca sativa HOM05D004363 ORTHO05D005110 2.0e-06 59.7 61 45.9


User provided reference genes

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