Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C009120.2 Cucumis melo HOM05D005896 ORTHO05D007250 0.0e+00 1908.3 964 100.0
CsaV3_3G033280 Cucumis sativus L. HOM05D005896 ORTHO05D007250 0.0e+00 1796.2 965 94.8
ClCG10G022550 Citrullus lanatus HOM05D005896 ORTHO05D007250 0.0e+00 1727.6 1060 85.0
Sed0010587 Sechium edule HOM05D005896 ORTHO05D007250 0.0e+00 1597.8 964 85.3
QL07p033519 Quercus lobata HOM05D005896 ORTHO05D007250 0.0e+00 1402.9 932 76.3
Atru.chr8.2358 Acer truncatum HOM05D005896 ORTHO05D007250 0.0e+00 1386.7 927 74.4
Dinv35431 Davidia involucrata HOM05D005896 ORTHO05D007250 0.0e+00 1384.4 910 76.5
Thecc.05G004100 Theobroma cacao HOM05D005896 ORTHO05D007250 0.0e+00 1382.1 881 77.4
GSVIVG01030240001 Vitis vinifera HOM05D005896 ORTHO05D007250 0.0e+00 1371.7 906 76.4
Actinidia11539 Actinidia chinensis HOM05D005896 ORTHO05D007250 0.0e+00 1371.3 912 75.5
FvH4_6g10330 Fragaria vesca HOM05D005896 ORTHO05D007250 0.0e+00 1370.5 948 73.6
Potri.006G106000 Populus trichocarpa HOM05D005896 ORTHO05D007250 0.0e+00 1363.6 879 77.0
Manes.09G113900 Manihot esculenta HOM05D005896 ORTHO05D007250 0.0e+00 1362.1 946 74.2
RcHm_v2.0_Chr3g0461101 Rosa chinensis HOM05D005896 ORTHO05D007250 0.0e+00 1362.1 921 74.6
FAN02G1083 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1359.0 958 73.0
Sabra06G0082600 Salix brachista HOM05D005896 ORTHO05D007250 0.0e+00 1354.7 900 74.7
FAN05G0609 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1349.7 958 72.8
FAN14G5183 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1347.4 958 72.4
CANSAT35G1655 Cannabis sativa HOM05D005896 ORTHO05D007250 0.0e+00 1347.0 926 74.0
Gohir.D04G136000 Gossypium hirsutum HOM05D005896 ORTHO05D007250 0.0e+00 1345.9 933 72.7
Gorai.012G119800 Gossypium raimondii HOM05D005896 ORTHO05D007250 0.0e+00 1345.1 933 72.7
FAN05G5239 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1342.8 984 70.9
Gohir.A04G096200 Gossypium hirsutum HOM05D005896 ORTHO05D007250 0.0e+00 1341.6 942 72.1
Prupe.6G287100 Prunus persica HOM05D005896 ORTHO05D007250 0.0e+00 1341.6 930 72.8
Glyma.18G209600 Glycine max HOM05D005896 ORTHO05D007250 0.0e+00 1338.2 910 74.6
Glyma.09G279500 Glycine max HOM05D005896 ORTHO05D007250 0.0e+00 1334.7 885 75.7
Haze_21109 Corylus avellana HOM05D005896 ORTHO05D007250 0.0e+00 1334.3 919 74.2
TWI77G0262 Tripterygium wilfordii HOM05D005896 ORTHO05D007250 0.0e+00 1332.4 908 74.2
CSS0019926 Camellia sinensis var. sinensis HOM05D005896 ORTHO05D007250 0.0e+00 1330.9 912 73.8
Lj1g0024727 Lotus japonicus HOM05D005896 ORTHO05D007250 0.0e+00 1330.1 905 73.5
MD12G1182400 Malus domestica HOM05D005896 ORTHO05D007250 0.0e+00 1329.7 928 73.2
MD04G1168900 Malus domestica HOM05D005896 ORTHO05D007250 0.0e+00 1329.3 900 74.6
Phvul.008G089700 Phaseolus vulgaris HOM05D005896 ORTHO05D007250 0.0e+00 1329.3 887 75.0
CSS0029745 Camellia sinensis var. sinensis HOM05D005896 ORTHO05D007250 0.0e+00 1327.4 912 73.6
arahy.Tifrunner.gnm1.ann1.2FTV5P Arachis hypogaea HOM05D005896 ORTHO05D007250 0.0e+00 1323.5 884 75.3
CAN.G738.1 Capsicum annuum HOM05D005896 ORTHO05D007250 0.0e+00 1322.8 877 75.7
Cc06_g00650 Coffea canephora HOM05D005896 ORTHO05D007250 0.0e+00 1320.8 962 71.1
arahy.Tifrunner.gnm1.ann1.Q3Q3XE Arachis hypogaea HOM05D005896 ORTHO05D007250 0.0e+00 1319.7 923 72.6
VMungo1383G2905 Vigna mungo HOM05D005896 ORTHO05D007250 0.0e+00 1318.9 885 74.8
Medtr7g071990 Medicago truncatula HOM05D005896 ORTHO05D007250 0.0e+00 1318.5 953 70.8
Lalb_Chr01g0023511 Lupinus albus HOM05D005896 ORTHO05D007250 0.0e+00 1315.8 885 74.4
MSTRG.5530 Avicennia marina HOM05D005896 ORTHO05D007250 0.0e+00 1312.0 882 74.4
Ca_26097_v3 Cicer arietinum L. HOM05D005896 ORTHO05D007250 0.0e+00 1306.6 884 73.8
Nn2g11051 Nelumbo nucifera HOM05D005896 ORTHO05D007250 0.0e+00 1303.9 924 72.2
Sopen10g034850 Solanum pennellii HOM05D005896 ORTHO05D007250 0.0e+00 1303.1 957 70.2
PSO339G6300 Papaver somniferum HOM05D005896 ORTHO05D007250 0.0e+00 1302.3 937 71.2
Psat3g120600 Pisum sativum HOM05D005896 ORTHO05D007250 0.0e+00 1300.4 884 73.4
vmacro20337 Vaccinium macrocarpon HOM05D005896 ORTHO05D007250 0.0e+00 1298.9 979 68.2
ECA236G3210 Erigeron canadensis HOM05D005896 ORTHO05D007250 0.0e+00 1297.3 897 73.0
HanXRQChr12g0363731 Helianthus annuus HOM05D005896 ORTHO05D007250 0.0e+00 1295.4 901 72.6
Nitab4.5_0004057g0040 Nicotiana tabacum HOM05D005896 ORTHO05D007250 0.0e+00 1290.8 901 73.0
Migut.J00081 Erythranthe guttata HOM05D005896 ORTHO05D007250 0.0e+00 1290.4 893 73.0
Lsat_1_v5_gn_8_105740 Lactuca sativa HOM05D005896 ORTHO05D007250 0.0e+00 1285.0 954 69.6
Rhsim05G0227300 Rhododendron simsii HOM05D005896 ORTHO05D007250 0.0e+00 1283.5 917 71.1
Aqoxy2G00762 Aquilegia oxysepala HOM05D005896 ORTHO05D007250 0.0e+00 1278.8 914 71.6
Sc02g0000680 Simmondsia chinensis HOM05D005896 ORTHO05D007250 0.0e+00 1274.2 902 71.6
Eucgr.A00643 Eucalyptus grandis HOM05D005896 ORTHO05D007250 0.0e+00 1273.1 860 74.5
Cfa017090 Carpinus fangiana HOM05D005896 ORTHO05D007250 0.0e+00 1266.1 941 70.5
TAR623G1464 Trochodendron aralioides HOM05D005896 ORTHO05D007250 0.0e+00 1265.4 1001 67.5
Lj2A64G51 Lonicera japonica HOM05D005896 ORTHO05D007250 0.0e+00 1250.3 915 71.5
CiPaw.09G216900 Carya illinoinensis HOM05D005896 ORTHO05D007250 0.0e+00 1246.9 814 77.5
Ciclev10011082m.g Citrus clementina HOM05D005896 ORTHO05D007250 0.0e+00 1233.0 807 75.5
Solyc10g085400.3 Solanum lycopersicum HOM05D005896 ORTHO05D007250 0.0e+00 1233.0 875 71.8
SalBow5G4224 Salvia bowleyana HOM05D005896 ORTHO05D007250 0.0e+00 1231.1 933 68.9
TPR.G18656 Trifolium pratense HOM05D005896 ORTHO05D007250 0.0e+00 1230.7 837 73.4
THA.LOC104823308 Tarenaya hassleriana HOM05D005896 ORTHO05D007250 0.0e+00 1230.3 883 71.2
Nitab4.5_0001703g0070 Nicotiana tabacum HOM05D005896 ORTHO05D007250 0.0e+00 1218.0 923 68.6
ATR0681G081 Amborella trichopoda HOM05D005896 ORTHO05D007250 0.0e+00 1215.3 945 67.1
FAN09G0048 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1209.1 949 68.2
BraA03t12806Z Brassica rapa HOM05D005896 ORTHO05D007250 0.0e+00 1208.7 932 67.2
AUR62006318 Chenopodium quinoa HOM05D005896 ORTHO05D007250 0.0e+00 1207.6 924 68.4
A03p36350 Brassica napus HOM05D005896 ORTHO05D007250 0.0e+00 1204.1 932 67.0
AL3G19830 Arabidopsis lyrata HOM05D005896 ORTHO05D007250 0.0e+00 1201.8 873 70.0
BcaB04g18571 Brassica carinata HOM05D005896 ORTHO05D007250 0.0e+00 1201.8 932 66.3
AT3G08840 Arabidopsis thaliana HOM05D005896 ORTHO05D007250 0.0e+00 1199.5 878 69.2
Thhalv10020004m.g Eutrema salsugineum HOM05D005896 ORTHO05D007250 0.0e+00 1196.4 904 68.0
BcaC01g04196 Brassica carinata HOM05D005896 ORTHO05D007250 0.0e+00 1183.3 932 65.3
Carub.0003s0795 Capsella rubella HOM05D005896 ORTHO05D007250 0.0e+00 1182.9 913 67.3
BolC3t16668H Brassica oleracea HOM05D005896 ORTHO05D007250 0.0e+00 1176.4 932 65.3
BcaC09g49362 Brassica carinata HOM05D005896 ORTHO05D007250 0.0e+00 1174.1 892 66.9
HPP92_013852 Vanilla planifolia HOM05D005896 ORTHO05D007250 0.0e+00 1171.0 881 68.9
BcaB04g20289 Brassica carinata HOM05D005896 ORTHO05D007250 0.0e+00 1164.8 885 67.5
Os07g0691200 Oryza sativa ssp. japonica HOM05D005896 ORTHO05D007250 0.0e+00 1161.4 899 65.5
A01p29640 Brassica napus HOM05D005896 ORTHO05D007250 0.0e+00 1159.1 893 66.4
C01p37440 Brassica napus HOM05D005896 ORTHO05D007250 0.0e+00 1155.6 897 66.6
DCAR_028898 Daucus carota HOM05D005896 ORTHO05D007250 0.0e+00 1154.8 946 65.1
BraA01t03093Z Brassica rapa HOM05D005896 ORTHO05D007250 0.0e+00 1146.3 908 65.7
C03p43970 Brassica napus HOM05D005896 ORTHO05D007250 0.0e+00 1146.0 910 65.1
COL.COLO4_14429 Corchorus olitorius HOM05D005896 ORTHO05D007250 0.0e+00 1135.2 894 67.1
Zm00001eb111890 Zea mays HOM05D005896 ORTHO05D007250 0.0e+00 1132.5 932 62.6
SEGI_19702 Sequoiadendron giganteum HOM05D005896 ORTHO05D007250 0.0e+00 1132.1 898 64.0
FAN14G5591 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1116.7 954 64.2
Aa31LG5G18810 Aethionema arabicum HOM05D005896 ORTHO05D007250 0.0e+00 1094.0 811 69.1
HPP92_013866 Vanilla planifolia HOM05D005896 ORTHO05D007250 8.0e-308 1060.4 876 63.8
CAN.G1288.7 Capsicum annuum HOM05D005896 ORTHO05D007250 2.2e-281 972.6 767 66.9
A03p36380 Brassica napus HOM05D005896 ORTHO05D007250 2.5e-277 959.1 767 64.9
SMO228G0083 Selaginella moellendorffii HOM05D005896 ORTHO05D007250 1.7e-273 946.4 875 55.3
Mapoly0266s0003 Marchantia polymorpha HOM05D005896 ORTHO05D007250 1.3e-265 920.2 900 52.6
Peaxi162Scf00009g01011 Petunia axillaris HOM05D005896 ORTHO05D007250 1.7e-254 883.2 599 73.8
HanXRQChr16g0509701 Helianthus annuus HOM05D005896 ORTHO05D007250 2.6e-250 869.4 684 67.0
Hma1.2p1_2300F.1_g319233 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 6.4e-249 864.8 575 76.0
Hma1.2p1_2300F.1_g319236 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 1.5e-245 853.6 575 75.7
Actinidia26603 Actinidia chinensis HOM05D005896 ORTHO05D007250 5.6e-237 825.1 591 71.9
PRCOL_00001217 Prasinoderma coloniale HOM05D005896 ORTHO05D007250 4.8e-212 742.3 919 47.3
CARHR083150 Cardamine hirsuta HOM05D005896 ORTHO05D007250 5.1e-206 722.2 559 65.8
AUR62026359 Chenopodium quinoa HOM05D005896 ORTHO05D007250 7.7e-202 708.4 891 48.5
MBI15_g29358_MAGBIO Magnolia biondii HOM05D005896 ORTHO05D007250 2.0e-194 683.7 555 66.5
Oeu023744.1 Olea europaea HOM05D005896 ORTHO05D007250 3.5e-194 682.9 445 74.6
BolC1t03711H Brassica oleracea HOM05D005896 ORTHO05D007250 3.2e-192 676.4 532 64.8
AagrBONN_evm.TU.Sc2ySwM_362.2825 Anthoceros agrestis HOM05D005896 ORTHO05D007250 4.2e-192 676.0 635 56.2
Pp3c18_18940 Physcomitrium patens HOM05D005896 ORTHO05D007250 9.7e-189 664.8 713 49.4
PGSC0003DMG400011105 Solanum tuberosum HOM05D005896 ORTHO05D007250 3.6e-175 619.8 410 74.9
Cpa.g.c34215 Carica papaya HOM05D005896 ORTHO05D007250 4.6e-162 576.2 397 71.3
Oeu033807.1 Olea europaea HOM05D005896 ORTHO05D007250 1.1e-128 465.3 370 67.8
Hma1.2p1_2300F.1_g319240 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 4.0e-118 430.3 267 79.8
BolC1t03712H Brassica oleracea HOM05D005896 ORTHO05D007250 2.0e-101 374.8 289 67.8
Peaxi162Scf00009g01010 Petunia axillaris HOM05D005896 ORTHO05D007250 5.5e-99 366.7 321 64.2
Hma1.2p1_3169F.1_g333550 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 1.6e-90 338.6 339 56.0
Nn2g16051 Nelumbo nucifera HOM05D005896 ORTHO05D007250 1.4e-83 315.5 216 75.5
Hund03771 Selenicereus undatus HOM05D005896 ORTHO05D007250 2.3e-81 308.1 238 63.9
SEGI_37805 Sequoiadendron giganteum HOM05D005896 ORTHO05D007250 4.0e-65 254.2 174 70.7
CBR_g38233 Chara braunii HOM05D005896 ORTHO05D007250 2.7e-61 241.5 250 51.2
CBR_g45569 Chara braunii HOM05D005896 ORTHO05D007250 4.5e-53 214.2 216 49.1
MBI15_g29355_MAGBIO Magnolia biondii HOM05D005896 ORTHO05D007250 5.2e-41 174.1 273 44.7
MBI15_g25466_MAGBIO Magnolia biondii HOM05D005896 ORTHO05D007250 1.6e-34 152.5 217 48.8
Solyc09g031528.1 Solanum lycopersicum HOM05D005896 ORTHO05D007250 1.3e-31 142.9 96 72.9
Cre15.g635650 Chlamydomonas reinhardtii HOM05D005896 ORTHO05D007250 1.8e-25 122.5 599 23.0
CiPaw.01G264800 Carya illinoinensis HOM05D001401 ORTHO05D002222 7.6e-24 117.1 82 72.0
CBR_g38232 Chara braunii HOM05D000019 ORTHO05D000048 5.4e-22 110.9 259 31.3
TPR.G7700 Trifolium pratense HOM05D005896 ORTHO05D007250 2.5e-19 102.1 130 52.3
Solyc09g015130.4 Solanum lycopersicum HOM05D005896 ORTHO05D007250 1.2e-16 93.2 58 77.6
Glyma.16G116800 Glycine max HOM05D005896 ORTHO05D007250 1.3e-12 79.7 69 58.0
COL.COLO4_03233 Corchorus olitorius HOM05D005896 ORTHO05D007250 7.6e-08 63.9 147 34.0
CBR_g45572 Chara braunii HOM05D000785 ORTHO05D000231 9.3e-06 57.0 71 47.9
Solyc07g032788.1 Solanum lycopersicum HOM05D005896 ORTHO05D007250 9.3e-06 57.0 37 73.0


User provided reference genes

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