Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C008677.2 Cucumis melo HOM05D006573 ORTHO05D008073 2.0e-243 845.5 483 100.0
CsaV3_2G010250 Cucumis sativus L. HOM05D006573 ORTHO05D008073 8.5e-226 786.9 490 94.7
ClCG11G010060 Citrullus lanatus HOM05D006573 ORTHO05D008073 6.7e-223 777.3 485 94.0
Sed0012720 Sechium edule HOM05D006573 ORTHO05D008073 1.1e-196 690.3 492 85.2
GSVIVG01026405001 Vitis vinifera HOM05D006573 ORTHO05D008073 4.6e-163 578.6 418 67.5
Manes.09G144600 Manihot esculenta HOM05D006573 ORTHO05D008073 9.9e-158 560.8 331 78.5
Gohir.A11G241000 Gossypium hirsutum HOM05D006573 ORTHO05D008073 1.3e-157 560.5 320 79.1
Thecc.05G259800 Theobroma cacao HOM05D006573 ORTHO05D008073 1.3e-157 560.5 383 69.7
Eucgr.B02180 Eucalyptus grandis HOM05D006573 ORTHO05D008073 2.2e-157 559.7 384 69.8
Cpa.g.sc51.78 Carica papaya HOM05D006573 ORTHO05D008073 6.4e-157 558.1 384 72.9
MD12G1255200 Malus domestica HOM05D006573 ORTHO05D008073 3.2e-156 555.8 358 71.8
Gohir.D11G250400 Gossypium hirsutum HOM05D006573 ORTHO05D008073 4.2e-156 555.4 320 78.8
Gorai.007G268500 Gossypium raimondii HOM05D006573 ORTHO05D008073 4.2e-156 555.4 320 78.8
TAR362G0441 Trochodendron aralioides HOM05D006573 ORTHO05D008073 2.7e-155 552.7 425 63.8
CiPaw.07G075700 Carya illinoinensis HOM05D006573 ORTHO05D008073 6.0e-155 551.6 344 74.1
TWI34G1215 Tripterygium wilfordii HOM05D006573 ORTHO05D008073 6.0e-155 551.6 319 79.0
Duzib177G1122 Durio zibethinus HOM05D006573 ORTHO05D008073 7.9e-155 551.2 320 78.4
Actinidia06814 Actinidia chinensis HOM05D006573 ORTHO05D008073 1.8e-154 550.1 377 71.6
CSS0006565 Camellia sinensis var. sinensis HOM05D006573 ORTHO05D008073 2.3e-154 549.7 471 60.1
Potri.013G053100 Populus trichocarpa HOM05D006573 ORTHO05D008073 3.0e-154 549.3 400 68.5
Nn1g07946 Nelumbo nucifera HOM05D006573 ORTHO05D008073 5.1e-154 548.5 389 67.6
Prupe.6G356100 Prunus persica HOM05D006573 ORTHO05D008073 5.1e-154 548.5 363 70.5
THA.LOC104805797 Tarenaya hassleriana HOM05D006573 ORTHO05D008073 6.7e-154 548.1 304 82.6
Cc09_g03200 Coffea canephora HOM05D006573 ORTHO05D008073 1.5e-153 547.0 303 82.8
MBI11_g07442_MAGBIO Magnolia biondii HOM05D006573 ORTHO05D008073 2.5e-153 546.2 327 75.8
Dinv19279 Davidia involucrata HOM05D006573 ORTHO05D008073 5.6e-153 545.0 411 65.2
Ciclev10019925m.g Citrus clementina HOM05D006573 ORTHO05D008073 7.4e-153 544.7 384 68.2
Atru.chr2.1254 Acer truncatum HOM05D006573 ORTHO05D008073 9.6e-153 544.3 397 69.8
CANSAT21G0678 Cannabis sativa HOM05D006573 ORTHO05D008073 9.6e-153 544.3 384 68.2
RcHm_v2.0_Chr3g0448661 Rosa chinensis HOM05D006573 ORTHO05D008073 9.6e-153 544.3 362 71.5
Glyma.03G253500 Glycine max HOM05D006573 ORTHO05D008073 3.7e-152 542.3 389 67.6
FAN14G5930 Fragaria x ananassa HOM05D006573 ORTHO05D008073 4.8e-152 542.0 362 69.9
FvH4_6g01130 Fragaria vesca HOM05D006573 ORTHO05D008073 2.4e-151 539.7 362 69.3
Glyma.19G251000 Glycine max HOM05D006573 ORTHO05D008073 5.3e-151 538.5 393 66.7
Thhalv10007587m.g Eutrema salsugineum HOM05D006573 ORTHO05D008073 9.0e-151 537.7 315 78.7
Haze_04495 Corylus avellana HOM05D006573 ORTHO05D008073 1.5e-150 537.0 290 82.8
Medtr7g116630 Medicago truncatula HOM05D006573 ORTHO05D008073 1.5e-150 537.0 389 66.3
VMungo0540G0667 Vigna mungo HOM05D006573 ORTHO05D008073 1.5e-150 537.0 318 78.3
FAN05G3303 Fragaria x ananassa HOM05D006573 ORTHO05D008073 2.0e-150 536.6 362 69.3
Hma1.2p1_0123F.1_g058030 Hydrangea macrophylla HOM05D006573 ORTHO05D008073 2.6e-150 536.2 377 69.0
BraA06t23762Z Brassica rapa HOM05D006573 ORTHO05D008073 3.4e-150 535.8 395 67.1
FAN05G2122 Fragaria x ananassa HOM05D006573 ORTHO05D008073 3.4e-150 535.8 362 69.3
FAN09G4254 Fragaria x ananassa HOM05D006573 ORTHO05D008073 7.6e-150 534.6 362 68.8
CARHR008450 Cardamine hirsuta HOM05D006573 ORTHO05D008073 9.9e-150 534.3 293 81.6
BolC5t29425H Brassica oleracea HOM05D006573 ORTHO05D008073 1.3e-149 533.9 395 67.1
C05p06650 Brassica napus HOM05D006573 ORTHO05D008073 2.2e-149 533.1 395 67.1
MSTRG.8177 Avicennia marina HOM05D006573 ORTHO05D008073 2.9e-149 532.7 330 75.8
Lj1g0015745 Lotus japonicus HOM05D006573 ORTHO05D008073 3.8e-149 532.3 382 66.0
Lalb_Chr18g0044221 Lupinus albus HOM05D006573 ORTHO05D008073 4.9e-149 531.9 323 74.3
TPR.G4727 Trifolium pratense HOM05D006573 ORTHO05D008073 4.9e-149 531.9 359 68.5
A06p05540 Brassica napus HOM05D006573 ORTHO05D008073 1.1e-148 530.8 395 66.3
Ca_09476_v3 Cicer arietinum L. HOM05D006573 ORTHO05D008073 1.1e-148 530.8 393 66.4
Sp1g07210 Schrenkiella parvula HOM05D006573 ORTHO05D008073 1.4e-148 530.4 395 65.6
Aa31sc20G120 Aethionema arabicum HOM05D006573 ORTHO05D008073 1.9e-148 530.0 392 65.1
ECA248G2645 Erigeron canadensis HOM05D006573 ORTHO05D008073 2.5e-148 529.6 333 73.6
EL10Ac4g09803 Beta vulgaris HOM05D006573 ORTHO05D008073 3.2e-148 529.3 303 78.9
Aqoxy2G03898 Aquilegia oxysepala HOM05D006573 ORTHO05D008073 5.5e-148 528.5 362 69.3
Phvul.006G108200 Phaseolus vulgaris HOM05D006573 ORTHO05D008073 5.5e-148 528.5 321 75.7
AL1G18980 Arabidopsis lyrata HOM05D006573 ORTHO05D008073 9.3e-148 527.7 316 76.3
Psat3g005000 Pisum sativum HOM05D006573 ORTHO05D008073 7.9e-147 524.6 391 71.4
Sabra13G0048100 Salix brachista HOM05D006573 ORTHO05D008073 1.0e-146 524.2 436 61.0
Sc09g0001730 Simmondsia chinensis HOM05D006573 ORTHO05D008073 1.0e-146 524.2 362 68.0
HPP92_020222 Vanilla planifolia HOM05D001545 ORTHO05D001600 1.3e-146 523.9 378 66.9
AUR62000660 Chenopodium quinoa HOM05D006573 ORTHO05D008073 1.8e-146 523.5 311 77.2
Nitab4.5_0000344g0030 Nicotiana tabacum HOM05D006573 ORTHO05D008073 1.8e-146 523.5 388 66.0
AUR62005294 Chenopodium quinoa HOM05D006573 ORTHO05D008073 3.0e-146 522.7 311 77.2
Nitab4.5_0012098g0010 Nicotiana tabacum HOM05D006573 ORTHO05D008073 3.9e-146 522.3 388 65.7
Hund07152 Selenicereus undatus HOM05D006573 ORTHO05D008073 3.9e-146 522.3 290 81.4
AT1G08550 Arabidopsis thaliana HOM05D006573 ORTHO05D008073 5.1e-146 521.9 315 75.9
Carub.0001s0791 Capsella rubella HOM05D006573 ORTHO05D008073 8.7e-146 521.2 315 75.9
Zm00001eb085840 Zea mays HOM05D006573 ORTHO05D008073 1.9e-145 520.0 295 78.6
Lj2A407T38 Lonicera japonica HOM05D006573 ORTHO05D008073 2.5e-145 519.6 392 69.6
SGA_v2.0_scaffold13G06342 Striga asiatica HOM05D006573 ORTHO05D008073 4.3e-145 518.8 305 77.0
CDE05G0683 Ceratophyllum demersum HOM05D006573 ORTHO05D008073 5.6e-145 518.5 299 76.9
HanXRQChr13g0406621 Helianthus annuus HOM05D006573 ORTHO05D008073 7.4e-145 518.1 348 69.3
PSO017G7064 Papaver somniferum HOM05D006573 ORTHO05D008073 9.6e-145 517.7 387 68.5
PSO063G7541 Papaver somniferum HOM05D006573 ORTHO05D008073 9.6e-145 517.7 393 67.9
Sopen04g022050 Solanum pennellii HOM05D006573 ORTHO05D008073 9.6e-145 517.7 308 76.9
Migut.F02066 Erythranthe guttata HOM05D006573 ORTHO05D008073 1.3e-144 517.3 431 59.6
CAN.G29.20 Capsicum annuum HOM05D006573 ORTHO05D008073 1.6e-144 516.9 432 60.0
SalBow1G2715 Salvia bowleyana HOM05D006573 ORTHO05D008073 2.1e-144 516.5 334 71.6
Solyc04g050930.3 Solanum lycopersicum HOM05D006573 ORTHO05D008073 2.8e-144 516.2 308 76.6
PGSC0003DMG400010688 Solanum tuberosum HOM05D006573 ORTHO05D008073 4.8e-144 515.4 352 68.5
SalBow1G0293 Salvia bowleyana HOM05D006573 ORTHO05D008073 1.1e-143 514.2 334 71.6
arahy.Tifrunner.gnm1.ann1.ZGZX3T Arachis hypogaea HOM05D006573 ORTHO05D008073 1.8e-143 513.5 307 75.2
arahy.Tifrunner.gnm1.ann1.L0KK3Q Arachis hypogaea HOM05D006573 ORTHO05D008073 6.9e-143 511.5 307 74.9
ATR0069G016 Amborella trichopoda HOM05D006573 ORTHO05D008073 9.0e-143 511.1 373 66.8
Lsat_1_v5_gn_7_62281 Lactuca sativa HOM05D006573 ORTHO05D008073 6.5e-141 505.0 425 62.6
Oeu054601.1 Olea europaea HOM05D006573 ORTHO05D008073 8.4e-141 504.6 348 68.1
CSS0039030 Camellia sinensis var. sinensis HOM05D006573 ORTHO05D008073 2.7e-139 499.6 471 56.1
DCAR_013654 Daucus carota HOM05D006573 ORTHO05D008073 1.0e-138 497.7 337 70.0
BcaB07g34098 Brassica carinata HOM05D006573 ORTHO05D008073 8.7e-138 494.6 395 63.8
COL.COLO4_20557 Corchorus olitorius HOM05D006573 ORTHO05D008073 1.3e-136 490.7 266 83.8
Peaxi162Scf01011g00215 Petunia axillaris HOM05D006573 ORTHO05D008073 8.2e-136 488.0 287 78.7
vmacro12852 Vaccinium macrocarpon HOM05D006573 ORTHO05D008073 3.8e-133 479.2 386 60.4
Lj2A405T39 Lonicera japonica HOM05D006573 ORTHO05D008073 2.5e-132 476.5 383 61.6
SEGI_03231 Sequoiadendron giganteum HOM05D006573 ORTHO05D008073 5.5e-132 475.3 295 72.2
Ah.06g188810 Amaranthus hybridus HOM05D006573 ORTHO05D008073 4.3e-129 465.7 385 62.6
Mapoly0111s0023 Marchantia polymorpha HOM05D006573 ORTHO05D008073 1.5e-126 457.2 280 72.9
Rhsim10G0138000 Rhododendron simsii HOM05D006573 ORTHO05D008073 2.3e-122 443.4 317 67.8
AagrBONN_evm.TU.Sc2ySwM_228.1660 Anthoceros agrestis HOM05D006573 ORTHO05D008073 1.1e-121 441.0 299 67.6
Pp3c3_13220 Physcomitrium patens HOM05D006573 ORTHO05D008073 5.3e-119 432.2 271 72.0
SMO270G0104 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 7.4e-113 411.8 262 70.2
CBR_g38554 Chara braunii HOM05D006573 ORTHO05D008073 3.7e-112 409.5 274 67.2
CDE05G0621 Ceratophyllum demersum HOM05D006573 ORTHO05D008073 6.3e-112 408.7 246 73.6
SEGI_19143 Sequoiadendron giganteum HOM05D006573 ORTHO05D008073 2.9e-109 399.8 283 62.5
Hma1.2p1_0123F.1_g058020 Hydrangea macrophylla HOM05D006573 ORTHO05D008073 2.7e-94 350.1 198 79.8
unitig_46.g17980 Utricularia gibba HOM05D006573 ORTHO05D008073 5.5e-92 342.4 217 71.9
Os04g0379700 Oryza sativa ssp. japonica HOM05D006573 ORTHO05D008073 4.7e-83 312.8 171 81.9
PGSC0003DMG400010690 Solanum tuberosum HOM05D006573 ORTHO05D008073 2.3e-77 293.9 230 60.0
Lj2C408T2 Lonicera japonica HOM05D006573 ORTHO05D008073 1.1e-76 291.6 204 67.6
SMO334G0031 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 1.6e-70 271.2 204 58.3
SMO297G0027 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 2.1e-70 270.8 204 57.8
PRCOL_00001224 Prasinoderma coloniale HOM05D006573 ORTHO05D008073 1.3e-69 268.1 312 43.9
SMO297G0014 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 2.3e-69 267.3 204 57.8
SMO270G0143 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 6.6e-69 265.8 204 56.9
MCO16G084 Micromonas commoda HOM05D006573 ORTHO05D008073 5.6e-68 262.7 283 44.9
PGSC0003DMG400020993 Solanum tuberosum HOM05D006573 ORTHO05D008073 7.1e-55 219.2 210 54.3
SMO266G0012 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 1.3e-32 145.2 98 60.2
unitig_46.g17981 Utricularia gibba HOM05D006573 ORTHO05D008073 8.7e-21 105.9 68 75.0
ATR1120G154 Amborella trichopoda HOM05D006367 ORTHO05D007942 6.1e-14 83.2 297 25.3
AagrBONN_evm.TU.Sc2ySwM_344.2769 Anthoceros agrestis HOM05D006367 ORTHO05D007942 7.4e-12 76.3 314 22.9
RcHm_v2.0_Chr2g0117401 Rosa chinensis HOM05D006367 ORTHO05D007942 1.3e-11 75.5 295 20.3
RcHm_v2.0_Chr2g0117441 Rosa chinensis HOM05D006367 ORTHO05D007942 1.3e-11 75.5 295 20.3
THA.LOC104807726 Tarenaya hassleriana HOM05D006367 ORTHO05D007942 1.3e-11 75.5 278 23.4
Zm00001eb361490 Zea mays HOM05D006367 ORTHO05D007942 1.3e-11 75.5 292 22.3
Nn5g28853 Nelumbo nucifera HOM05D006367 ORTHO05D007942 1.7e-11 75.1 276 23.9
FAN19G1918 Fragaria x ananassa HOM05D006367 ORTHO05D007942 2.8e-11 74.3 317 20.5
FvH4_1g22940 Fragaria vesca HOM05D006367 ORTHO05D007942 3.7e-11 73.9 304 21.4
Pp3c8_810 Physcomitrium patens HOM05D006367 ORTHO05D007942 4.8e-11 73.6 282 23.0
FAN23G0352 Fragaria x ananassa HOM05D006367 ORTHO05D007942 1.4e-10 72.0 292 21.6
Hma1.2p1_0696F.1_g204660 Hydrangea macrophylla HOM05D006367 ORTHO05D007942 1.4e-10 72.0 272 22.1
QL93p0249_0008 Quercus lobata HOM05D006573 ORTHO05D008073 1.4e-10 72.0 95 41.1
RcHm_v2.0_Chr2g0117461 Rosa chinensis HOM05D006367 ORTHO05D007942 2.4e-10 71.2 295 20.3
Migut.H02447 Erythranthe guttata HOM05D006367 ORTHO05D007942 5.3e-10 70.1 310 21.9
AL4G11170 Arabidopsis lyrata HOM05D006367 ORTHO05D007942 3.4e-09 67.4 184 22.3
CDE04G0187 Ceratophyllum demersum HOM05D006367 ORTHO05D007942 3.4e-09 67.4 257 21.4
CANSAT21G2601 Cannabis sativa HOM05D006367 ORTHO05D007942 4.5e-09 67.0 272 21.7
Prupe.6G168900 Prunus persica HOM05D006367 ORTHO05D007942 5.9e-09 66.6 273 22.0
Lj4P863T60 Lonicera japonica HOM05D006367 ORTHO05D007942 1.7e-08 65.1 295 22.0
MD10G1028700 Malus domestica HOM05D006367 ORTHO05D007942 6.5e-08 63.2 143 23.8


User provided reference genes

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