Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C008320.2 Cucumis melo HOM05D003838 ORTHO05D004444 2.5e-136 488.8 247 100.0
CsaV3_6G002030 Cucumis sativus L. HOM05D003838 ORTHO05D004444 6.1e-95 351.3 247 76.1
ClCG08G004710 Citrullus lanatus HOM05D003838 ORTHO05D004444 2.7e-87 325.9 247 70.9
Sed0023259 Sechium edule HOM05D003838 ORTHO05D004444 1.1e-83 313.9 247 67.6
Thecc.04G179800 Theobroma cacao HOM05D003838 ORTHO05D004444 2.0e-66 256.5 246 54.5
Cfa015168 Carpinus fangiana HOM05D003838 ORTHO05D004444 4.6e-66 255.4 245 54.7
Gorai.011G142700 Gossypium raimondii HOM05D003838 ORTHO05D004444 2.3e-65 253.1 246 54.5
GSVIVG01022417001 Vitis vinifera HOM05D003838 ORTHO05D004444 2.3e-65 253.1 247 51.8
Ciclev10022331m.g Citrus clementina HOM05D003838 ORTHO05D004444 5.0e-65 251.9 247 52.6
Duzib212G0889 Durio zibethinus HOM05D003838 ORTHO05D004444 8.6e-65 251.1 246 53.3
Gohir.A10G137200 Gossypium hirsutum HOM05D003838 ORTHO05D004444 2.5e-64 249.6 246 53.7
Prupe.3G140200 Prunus persica HOM05D003838 ORTHO05D004444 7.3e-64 248.1 241 54.4
Haze_01511 Corylus avellana HOM05D003838 ORTHO05D004444 3.6e-63 245.7 235 55.3
Hma1.2p1_0002F.1_g002170 Hydrangea macrophylla HOM05D003838 ORTHO05D004444 4.7e-63 245.4 245 51.8
Manes.03G131800 Manihot esculenta HOM05D003838 ORTHO05D004444 1.8e-62 243.4 246 53.3
TAR376G0719 Trochodendron aralioides HOM05D003838 ORTHO05D004444 1.8e-62 243.4 247 50.6
MD13G1208600 Malus domestica HOM05D003838 ORTHO05D004444 5.2e-62 241.9 247 53.4
AUR62028681 Chenopodium quinoa HOM05D003838 ORTHO05D004444 1.5e-61 240.4 247 49.0
Lj9P420T34 Lonicera japonica HOM05D003838 ORTHO05D004444 1.5e-61 240.4 245 51.0
Sabra17G0019500 Salix brachista HOM05D003838 ORTHO05D004444 2.0e-61 240.0 243 54.3
CSS0031035 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 5.8e-61 238.4 239 51.0
Potri.017G030000 Populus trichocarpa HOM05D003838 ORTHO05D004444 5.8e-61 238.4 243 53.5
Manes.15G070000 Manihot esculenta HOM05D003838 ORTHO05D004444 2.9e-60 236.1 246 52.8
AUR62008103 Chenopodium quinoa HOM05D003838 ORTHO05D004444 4.9e-60 235.3 247 48.2
Ca_14316_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 4.9e-60 235.3 241 53.1
arahy.Tifrunner.gnm1.ann1.0B6HPH Arachis hypogaea HOM05D003838 ORTHO05D004444 6.4e-60 235.0 245 51.0
CSS0022226 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 8.3e-60 234.6 239 50.6
arahy.Tifrunner.gnm1.ann1.536K79 Arachis hypogaea HOM05D003838 ORTHO05D004444 1.1e-59 234.2 245 51.0
Glyma.11G081600 Glycine max HOM05D003838 ORTHO05D004444 1.1e-59 234.2 240 50.8
Phvul.005G032200 Phaseolus vulgaris HOM05D003838 ORTHO05D004444 1.4e-59 233.8 241 50.2
Nn1g08615 Nelumbo nucifera HOM05D003838 ORTHO05D004444 1.9e-59 233.4 247 49.8
CSS0030021 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 2.4e-59 233.0 239 50.2
MBI16_g18329_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 4.1e-59 232.3 247 49.4
RcHm_v2.0_Chr4g0393311 Rosa chinensis HOM05D003838 ORTHO05D004444 4.6e-58 228.8 244 49.2
VMungo1080G0233 Vigna mungo HOM05D003838 ORTHO05D004444 4.6e-58 228.8 241 49.8
COL.COLO4_07664 Corchorus olitorius HOM05D003838 ORTHO05D004444 6.0e-58 228.4 247 50.2
TAR629G1244 Trochodendron aralioides HOM05D003838 ORTHO05D004444 6.0e-58 228.4 247 48.6
Ah.11g050950 Amaranthus hybridus HOM05D003838 ORTHO05D004444 7.8e-58 228.0 246 47.2
CANSAT78G1384 Cannabis sativa HOM05D003838 ORTHO05D004444 1.7e-57 226.9 236 50.8
Eucgr.A00080 Eucalyptus grandis HOM05D003838 ORTHO05D004444 2.3e-57 226.5 246 49.2
Actinidia26441 Actinidia chinensis HOM05D003838 ORTHO05D004444 3.0e-57 226.1 237 50.2
EL10Ac5g10613 Beta vulgaris HOM05D003838 ORTHO05D004444 6.6e-57 224.9 246 45.9
CDE06G0074 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 6.6e-57 224.9 252 49.6
PGR083G1767 Punica granatum HOM05D003838 ORTHO05D004444 8.6e-57 224.6 242 48.8
Lalb_Chr10g0091981 Lupinus albus HOM05D003838 ORTHO05D004444 1.1e-56 224.2 247 49.8
Prupe.1G032600 Prunus persica HOM05D003838 ORTHO05D004444 1.1e-56 224.2 242 50.0
QL03p038958 Quercus lobata HOM05D003838 ORTHO05D004444 1.5e-56 223.8 234 50.4
Medtr3g021420 Medicago truncatula HOM05D003838 ORTHO05D004444 1.6e-55 220.3 241 49.8
Atru.chr3.1491 Acer truncatum HOM05D003838 ORTHO05D004444 3.6e-55 219.2 239 49.8
Psat5g216120 Pisum sativum HOM05D003838 ORTHO05D004444 4.7e-55 218.8 241 49.8
Medtr3g030930 Medicago truncatula HOM05D003838 ORTHO05D004444 6.2e-55 218.4 241 49.8
PSO063G7239 Papaver somniferum HOM05D003838 ORTHO05D004444 1.1e-54 217.6 241 48.1
CSS0020761 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 1.4e-54 217.2 242 48.8
Migut.I00010 Erythranthe guttata HOM05D003838 ORTHO05D004444 1.8e-54 216.9 245 47.3
Medtr7g090650 Medicago truncatula HOM05D003838 ORTHO05D004444 1.8e-54 216.9 243 50.2
Lj3g0022900 Lotus japonicus HOM05D003838 ORTHO05D004444 6.8e-54 214.9 245 48.2
MBI16_g18328_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 8.9e-54 214.5 247 46.2
RcHm_v2.0_Chr4g0390961 Rosa chinensis HOM05D003838 ORTHO05D004444 8.9e-54 214.5 243 46.5
FvH4_4g03700 Fragaria vesca HOM05D003838 ORTHO05D004444 1.2e-53 214.2 242 47.1
Sc20g0000750 Simmondsia chinensis HOM05D003838 ORTHO05D004444 2.0e-53 213.4 246 43.1
Cc06_g03220 Coffea canephora HOM05D003838 ORTHO05D004444 2.6e-53 213.0 243 47.7
TPR.G3853 Trifolium pratense HOM05D003838 ORTHO05D004444 2.6e-53 213.0 241 49.8
TWI38G0658 Tripterygium wilfordii HOM05D003838 ORTHO05D004444 2.6e-53 213.0 240 47.1
Cc07_g02090 Coffea canephora HOM05D003838 ORTHO05D004444 3.4e-53 212.6 243 46.9
PSO782G5029 Papaver somniferum HOM05D003838 ORTHO05D004444 3.4e-53 212.6 241 47.3
FAN17G3077 Fragaria x ananassa HOM05D003838 ORTHO05D004444 4.4e-53 212.2 242 47.1
DCAR_006535 Daucus carota HOM05D003838 ORTHO05D004444 5.8e-53 211.8 242 46.7
Hund09632 Selenicereus undatus HOM05D003838 ORTHO05D004444 5.8e-53 211.8 246 45.1
SGA_v2.0_scaffold25G10841 Striga asiatica HOM05D003838 ORTHO05D004444 5.8e-53 211.8 246 45.9
RcHm_v2.0_Chr4g0390901 Rosa chinensis HOM05D003838 ORTHO05D004444 9.9e-53 211.1 243 46.1
Peaxi162Scf00201g00019 Petunia axillaris HOM05D003838 ORTHO05D004444 1.3e-52 210.7 245 45.7
Lalb_Chr17g0336351 Lupinus albus HOM05D003838 ORTHO05D004444 1.7e-52 210.3 247 47.0
MSTRG.23130 Avicennia marina HOM05D003838 ORTHO05D004444 2.2e-52 209.9 245 45.3
Nitab4.5_0000515g0040 Nicotiana tabacum HOM05D003838 ORTHO05D004444 2.9e-52 209.5 240 46.7
Aqoxy7G02681 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 3.7e-52 209.1 247 45.7
SGA_v2.0_scaffold90G27933 Striga asiatica HOM05D003838 ORTHO05D004444 1.1e-51 207.6 246 45.1
arahy.Tifrunner.gnm1.ann1.JCJT2N Arachis hypogaea HOM05D000735 ORTHO05D004669 4.1e-51 205.7 236 47.5
Hund02940 Selenicereus undatus HOM05D003838 ORTHO05D004444 4.1e-51 205.7 246 43.9
Nitab4.5_0002162g0060 Nicotiana tabacum HOM05D003838 ORTHO05D004444 5.4e-51 205.3 239 47.7
Aqoxy7G02974 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 1.2e-50 204.1 245 45.3
FAN12G0299 Fragaria x ananassa HOM05D000189 ORTHO05D000474 1.6e-50 203.8 232 47.0
QL10p048766 Quercus lobata HOM05D003838 ORTHO05D004444 1.6e-50 203.8 241 46.5
vmacro23050 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 1.6e-50 203.8 238 44.1
Peaxi162Scf00970g00146 Petunia axillaris HOM05D003838 ORTHO05D004444 2.7e-50 203.0 239 46.9
PSO210G5426 Papaver somniferum HOM05D003838 ORTHO05D004444 3.5e-50 202.6 247 46.2
AUR62011801 Chenopodium quinoa HOM05D003838 ORTHO05D004444 6.0e-50 201.8 247 44.5
PGSC0003DMG400029841 Solanum tuberosum HOM05D003838 ORTHO05D004444 7.8e-50 201.4 239 44.8
Solyc10g079580.2 Solanum lycopersicum HOM05D003838 ORTHO05D004444 1.3e-49 200.7 239 45.2
vmacro01004 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 1.3e-49 200.7 232 44.8
SalBow5G3784 Salvia bowleyana HOM05D003838 ORTHO05D004444 1.7e-49 200.3 245 44.1
Rhsim05G0049100 Rhododendron simsii HOM05D003838 ORTHO05D004444 2.3e-49 199.9 233 45.9
CiPaw.01G100400 Carya illinoinensis HOM05D003838 ORTHO05D004444 3.9e-49 199.1 192 54.2
Gohir.D10G129400 Gossypium hirsutum HOM05D003838 ORTHO05D004444 3.9e-49 199.1 149 64.4
Sopen10g030220 Solanum pennellii HOM05D003838 ORTHO05D004444 3.9e-49 199.1 239 44.8
SalBow7G4199 Salvia bowleyana HOM05D003838 ORTHO05D004444 6.6e-49 198.4 239 44.8
AUR62024648 Chenopodium quinoa HOM05D004658 ORTHO05D005927 1.1e-48 197.6 246 43.1
Nitab4.5_0002208g0080 Nicotiana tabacum HOM05D003838 ORTHO05D004444 2.5e-48 196.4 239 46.0
Nn5g28129 Nelumbo nucifera HOM05D003838 ORTHO05D004444 7.3e-48 194.9 247 44.9
Rhsim09G0030300 Rhododendron simsii HOM05D003838 ORTHO05D004444 9.6e-48 194.5 242 44.6
RhsimUnG0118200 Rhododendron simsii HOM05D003838 ORTHO05D004444 9.6e-48 194.5 233 44.2
Lj5P157T23 Lonicera japonica HOM05D003838 ORTHO05D004444 1.8e-46 190.3 149 62.4
Aa31LG1G8370 Aethionema arabicum HOM05D003838 ORTHO05D004444 3.1e-46 189.5 242 43.0
CARHR005500 Cardamine hirsuta HOM05D003838 ORTHO05D004444 3.1e-46 189.5 242 43.4
SEGI_03408 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 4.0e-46 189.1 235 44.3
ATR0665G504 Amborella trichopoda HOM05D003838 ORTHO05D004444 1.2e-45 187.6 245 42.4
Aqoxy285s002 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 1.5e-45 187.2 225 45.3
Nitab4.5_0024579g0010 Nicotiana tabacum HOM05D003838 ORTHO05D004444 2.0e-45 186.8 240 43.3
PGSC0003DMG400002948 Solanum tuberosum HOM05D003838 ORTHO05D004444 4.4e-45 185.7 236 44.9
arahy.Tifrunner.gnm1.ann1.IZ4F9K Arachis hypogaea HOM05D003838 ORTHO05D004444 1.3e-44 184.1 241 43.6
Oeu016385.1 Olea europaea HOM05D003838 ORTHO05D004444 1.3e-44 184.1 221 45.7
ECA246G3227 Erigeron canadensis HOM05D003838 ORTHO05D004444 2.2e-44 183.3 240 43.3
Ca_25969_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 6.4e-44 181.8 212 48.1
AL1G15920 Arabidopsis lyrata HOM05D003838 ORTHO05D004444 1.4e-43 180.6 242 40.5
C05p04300 Brassica napus HOM05D003838 ORTHO05D004444 7.1e-43 178.3 238 39.5
HanXRQChr10g0305171 Helianthus annuus HOM05D003838 ORTHO05D004444 7.1e-43 178.3 238 42.0
BolC5t29205H Brassica oleracea HOM05D003838 ORTHO05D004444 9.3e-43 177.9 238 39.5
CDE02G1933 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 9.3e-43 177.9 240 40.0
HanXRQChr02g0057691 Helianthus annuus HOM05D003838 ORTHO05D004444 9.3e-43 177.9 238 40.8
Carub.0001s0533 Capsella rubella HOM05D003838 ORTHO05D004444 1.2e-42 177.6 242 39.7
HanXRQChr01g0021151 Helianthus annuus HOM05D003838 ORTHO05D004444 2.1e-42 176.8 238 42.0
THA.LOC104826203 Tarenaya hassleriana HOM05D003838 ORTHO05D004444 2.1e-42 176.8 246 41.5
HanXRQChr16g0504861 Helianthus annuus HOM05D003838 ORTHO05D004444 2.7e-42 176.4 238 41.2
AT1G05970 Arabidopsis thaliana HOM05D003838 ORTHO05D004444 3.5e-42 176.0 242 39.3
HanXRQChr14g0439271 Helianthus annuus HOM05D003838 ORTHO05D004444 4.6e-42 175.6 238 41.2
HanXRQChr16g0516761 Helianthus annuus HOM05D003838 ORTHO05D004444 4.6e-42 175.6 238 41.2
RcHm_v2.0_Chr4g0390871 Rosa chinensis HOM05D003838 ORTHO05D004444 1.0e-41 174.5 230 42.6
HanXRQChr16g0517051 Helianthus annuus HOM05D003838 ORTHO05D004444 1.3e-41 174.1 240 41.2
Sp1g04800 Schrenkiella parvula HOM05D003838 ORTHO05D004444 1.7e-41 173.7 238 38.2
Thhalv10008811m.g Eutrema salsugineum HOM05D003838 ORTHO05D004444 2.3e-41 173.3 242 39.3
FAN12G3313 Fragaria x ananassa HOM05D003838 ORTHO05D004444 2.3e-41 173.3 245 40.0
BraA10t42729Z Brassica rapa HOM05D003838 ORTHO05D004444 3.9e-41 172.6 238 39.1
A10p04640 Brassica napus HOM05D003838 ORTHO05D004444 5.1e-41 172.2 238 39.1
FvH4_4g02890 Fragaria vesca HOM05D003838 ORTHO05D004444 8.7e-41 171.4 242 39.7
ECA238G0498 Erigeron canadensis HOM05D003838 ORTHO05D004444 1.5e-40 170.6 228 43.4
CDE08G0678 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 1.9e-40 170.2 136 61.0
HanXRQChr02g0057701 Helianthus annuus HOM05D003838 ORTHO05D004444 2.5e-40 169.9 238 42.0
Zm00001eb304590 Zea mays HOM05D003838 ORTHO05D004444 2.5e-40 169.9 237 40.5
SEGI_13821 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 4.3e-40 169.1 238 40.3
CARHR038440 Cardamine hirsuta HOM05D003838 ORTHO05D004444 7.3e-40 168.3 158 51.3
EL10As5g23534 Beta vulgaris HOM05D003838 ORTHO05D004444 1.3e-39 167.5 245 38.8
Os07g0256200 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 1.6e-39 167.2 239 38.9
HanXRQChr12g0355781 Helianthus annuus HOM05D003838 ORTHO05D004444 2.8e-39 166.4 239 41.0
Ca_24199_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 8.1e-39 164.9 204 46.6
Migut.L01638 Erythranthe guttata HOM05D003838 ORTHO05D004444 1.4e-38 164.1 236 39.8
Lsat_1_v5_gn_2_85780 Lactuca sativa HOM05D003838 ORTHO05D004444 2.4e-38 163.3 225 40.9
Sopen04g016270 Solanum pennellii HOM05D003838 ORTHO05D004444 6.9e-38 161.8 144 56.2
unitig_750.g28470 Utricularia gibba HOM05D003838 ORTHO05D004444 9.0e-38 161.4 242 39.7
ATR0665G008 Amborella trichopoda HOM05D003838 ORTHO05D004444 1.2e-37 161.0 137 54.7
Ca_24671_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 7.6e-37 158.3 201 44.3
vmacro04174 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 3.8e-36 156.0 163 49.7
Os09g0111800 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 4.2e-35 152.5 239 36.8
BcaC05g24315 Brassica carinata HOM05D003838 ORTHO05D004444 9.3e-35 151.4 238 36.1
Os04g0689700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 3.5e-34 149.4 239 35.6
Zm00001eb076310 Zea mays HOM05D003838 ORTHO05D004444 6.6e-33 145.2 240 35.0
Zm00001eb076930 Zea mays HOM05D003838 ORTHO05D004444 6.6e-33 145.2 240 35.0
Os02g0669700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 3.1e-30 136.3 241 36.9
PSO832G2359 Papaver somniferum HOM05D003838 ORTHO05D004444 1.2e-29 134.4 247 35.2
Cpa.g.sc71.4 Carica papaya HOM05D003838 ORTHO05D004444 9.9e-29 131.3 173 40.5
HPP92_001929 Vanilla planifolia HOM05D003838 ORTHO05D004444 9.9e-29 131.3 241 33.6
FAN22G1473 Fragaria x ananassa HOM05D003838 ORTHO05D004444 2.2e-28 130.2 181 40.9
Sp1g04950 Schrenkiella parvula HOM05D003838 ORTHO05D004444 4.9e-28 129.0 238 32.8
Rhsim12G0057800 Rhododendron simsii HOM05D003838 ORTHO05D004444 2.7e-26 123.2 158 43.0
RcHm_v2.0_Chr4g0390851 Rosa chinensis HOM05D003838 ORTHO05D004444 2.8e-23 113.2 161 38.5
CDE08G1258 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 2.0e-21 107.1 250 32.8
MD16G1210800 Malus domestica HOM05D003838 ORTHO05D004444 3.8e-20 102.8 108 50.9
Actinidia06873 Actinidia chinensis HOM05D003838 ORTHO05D004444 1.3e-15 87.8 237 30.8
CBR_g31525 Chara braunii HOM05D003838 ORTHO05D004444 8.2e-15 85.1 105 41.0
CBR_g15988 Chara braunii HOM05D003838 ORTHO05D004444 1.4e-14 84.3 180 30.0
Peaxi162Scf01029g00016 Petunia axillaris HOM05D003838 ORTHO05D004444 1.4e-14 84.3 74 55.4
Sopen04g016210 Solanum pennellii HOM05D003838 ORTHO05D004444 2.0e-13 80.5 84 50.0
Rhsim12G0009000 Rhododendron simsii HOM05D003838 ORTHO05D004444 3.4e-13 79.7 67 59.7
FAN17G0891 Fragaria x ananassa HOM05D003838 ORTHO05D004444 1.2e-10 71.2 152 32.9
Mapoly0037s0121 Marchantia polymorpha HOM05D003838 ORTHO05D004444 8.7e-09 65.1 144 29.9
Pp3c10_5570 Physcomitrium patens HOM05D003838 ORTHO05D004444 4.3e-08 62.8 143 31.5
Solyc04g040053.1 Solanum lycopersicum HOM05D003838 ORTHO05D004444 4.3e-08 62.8 124 33.1
Solyc04g040010.3 Solanum lycopersicum HOM05D003838 ORTHO05D004444 9.7e-08 61.6 125 32.0


User provided reference genes

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